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Comparison of diagnostic performance for pulmonary nodule detection between free-breathing spiral ultrashort echo time and free-breathing radial volumetric interpolated breath-hold examination. 自由呼吸螺旋超短回波时间与自由呼吸径向容积内插屏气检查对肺结节诊断价值的比较。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-10 DOI: 10.1186/s12880-024-01536-6
Yehai Jiang, Doudou Pu, Xuyang Zhang, Zhanli Ren, Nan Yu

Objective: This study aims to evaluate the efficacy of two free-breathing magnetic resonance imaging (MRI) sequences-spiral ultrashort echo time (spiral UTE) and radial volumetric interpolated breath-hold examination (radial VIBE).

Methods: Patients were prospectively enrolled between February 2021 and September 2022. All participants underwent both 3T MRI scanning, utilizing the radial VIBE sequence and spiral UTE sequence, as well as standard chest CT imaging. The CT and MRI examinations were conducted within a 7-day interval. Two radiologists assessed the image quality using a visual 5-point ordinal Likert scale, and pulmonary nodules identified on MRI were evaluated through comparison with CT as the reference standard.

Results: A total of 52 patients participated in this study, during which 82 pulmonary nodules were detected via CT imaging. The image quality scores for depicting pulmonary vasculature and airways using the spiral UTE sequence (4.61 ± 0.63; 4.76 ± 0.48) were significantly higher than those for the radial VIBE sequence (4.27 ± 0.87; 4.14 ± 0.82) (P < 0.05). However, for nodules smaller than 6 mm, the detection rate for the spiral UTE sequence (82.61%) was notably higher than that of the radial VIBE sequence (39.13%) (P < 0.05). Additionally, the detection rate for ground-glass nodules was higher with the spiral UTE sequence (75.00%) compared to the radial VIBE sequence (17.86%) (P < 0.05). The Pearson correlation coefficient (r) between radial VIBE and CT was 0.99 (P < 0.001), and the Pearson correlation coefficient (r) between spiral UTE and CT was also 0.99 (P < 0.001).

Conclusion: The spiral UTE sequence demonstrates superior capability in visualizing ground glass nodules, blood vessels, and airways. In cases where patients present with ground glass nodules, the spiral UTE sequence is the preferred choice. Conversely, when the nodules are solid or partially solid, it is advisable to opt for radial VIBE sequences that are time-efficient and exhibit fewer artifacts.

目的:评价两种自由呼吸磁共振成像(MRI)序列-螺旋超短回波时间(螺旋UTE)和径向容积内插式屏气检查(径向VIBE)的疗效。方法:在2021年2月至2022年9月期间前瞻性纳入患者。所有参与者都接受了3T MRI扫描,利用径向VIBE序列和螺旋UTE序列,以及标准的胸部CT成像。每隔7天进行CT和MRI检查。两名放射科医生使用视觉5点有序李克特量表评估图像质量,并通过与CT的比较来评估MRI上发现的肺结节作为参考标准。结果:共52例患者参与本研究,期间通过CT成像发现82个肺结节。螺旋UTE序列描述肺血管和气道的图像质量得分(4.61±0.63;(4.76±0.48)显著高于VIBE径向序列(4.27±0.87;结论:螺旋UTE序列在显示磨砂玻璃结节、血管和气道方面具有优势。在出现磨砂玻璃结节的病例中,螺旋ut序列是首选。相反,当结节为实性或部分实性时,建议选择径向VIBE序列,这样既省时又少伪影。
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引用次数: 0
Knowledge discovery from database: MRI radiomic features to assess recurrence risk in high-grade meningiomas. 来自数据库的知识发现:MRI放射学特征评估高级别脑膜瘤复发风险。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-09 DOI: 10.1186/s12880-024-01483-2
Chen Chen, Lifang Hao, Bin Bai, Guijun Zhang

Purpose: We used knowledge discovery from radiomics of T2-weighted imaging (T2WI) and contrast-enhanced T1-weighted imaging (T1C) for assessing relapse risk in patients with high-grade meningiomas (HGMs).

Methods: 279 features were extracted from each ROI including 9 histogram features, 220 Gy-level co-occurrence matrix features, 20 Gy-level run-length matrix features, 5 auto-regressive model features, 20 wavelets transform features and 5 absolute gradient statistics features. The datasets were randomly divided into two groups, the training set (~ 70%) and the test set (~ 30%). Combinations of data preprocessing methods, including normalization (Min-Max, Z-score, Mean), dimensionality reduction (Pearson Correlation Coefficients (PCC)), feature selector (max-Number, cluster) and ten-fold cross-validation were analyzed for their prediction performance. Kaplan-Meier curve, Cox proportional hazards regression model were used and concordance index (C-index), integrated Brier score (IBS) were selected. Model performance was assessed using the C-index.

Results: WHO grade, age, gender, histogram (Mean, Perc.90%, Perc.99%), Gray-level co-occurrence matrix (S(3, -3)DifVarnc, S(5, 5)Correlat, S(1, 0)SumEntrp, S(2, -2)InvDfMom), Teta1, WavEnLL_s-2 and GrVariance were identified as the significant recurrence factors. The pipeline using Mean_PCC_Cluster_10 of T1C yielded the highest efficiency with an IBS of 0.170, 0.188, 0.208 and C-index of 0.709, 0.705, 0.602 in the train, test and validation sets, respectively. The pipeline using MinMax_PCC_Cluster_19 of T2WI yielded the highest efficiency with an IBS of 0.189, 0.175, 0.185 and C-index of 0.783, 0.66, 0.649 in the train, test and validation sets. The pipeline using MinMax_PCC_Cluster_13 of T2WI + T1C yielded the highest efficiency with an IBS of 0.152, 0.164, 0.191 and C-index of 0.701, 0.656, 0.593 in the train, test and validation sets, respectively.

Conclusion: Knowledge discovery from MRI radiomic features can slightly help predict recurrence risk in HGMs. T2WI or T1C yielded better efficiency than T2WI + T1C. The parameters with the best power were Mean, Perc.99%, WavEnLL_s-2, Teta1 and GrVariance.

目的:我们利用放射组学的t2加权成像(T2WI)和对比增强t1加权成像(T1C)的知识发现来评估高级别脑膜瘤(HGMs)患者的复发风险。方法:从每个ROI中提取279个特征,包括9个直方图特征、220个gy级共出现矩阵特征、20个gy级游程矩阵特征、5个自回归模型特征、20个小波变换特征和5个绝对梯度统计特征。数据集随机分为两组,训练集(~ 70%)和测试集(~ 30%)。分析了归一化(Min-Max, Z-score, Mean)、降维(Pearson Correlation Coefficients, PCC)、特征选择(max-Number, cluster)和十倍交叉验证等数据预处理方法的组合预测性能。采用Kaplan-Meier曲线、Cox比例风险回归模型,采用一致性指数(C-index)、综合Brier评分(IBS)。使用c指数评估模型性能。结果:WHO分级、年龄、性别、直方图(Mean、Perc.90%、Perc.99%)、灰度级共发生矩阵(S(3, -3)DifVarnc、S(5,5) correlation、S(1,0)SumEntrp、S(2, -2)InvDfMom)、Teta1、WavEnLL_s-2、GrVariance被确定为显著复发因素。使用T1C的Mean_PCC_Cluster_10的流水线效率最高,在训练集、测试集和验证集的IBS分别为0.170、0.188、0.208,C-index分别为0.709、0.705、0.602。使用T2WI的MinMax_PCC_Cluster_19的管道在训练集、测试集和验证集上的IBS分别为0.189、0.175、0.185,C-index分别为0.783、0.66、0.649,效率最高。使用T2WI + T1C的MinMax_PCC_Cluster_13的流水线效率最高,在训练集、测试集和验证集的IBS分别为0.152、0.164、0.191,C-index分别为0.701、0.656、0.593。结论:MRI放射学特征的知识发现对预测hgm的复发风险有一定的帮助。T2WI + T1C比T2WI + T1C有效率。最有效的参数为Mean、Perc.99%、WavEnLL_s-2、Teta1和GrVariance。
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引用次数: 0
Effective BCDNet-based breast cancer classification model using hybrid deep learning with VGG16-based optimal feature extraction. 基于bcdnet的有效乳腺癌分类模型采用混合深度学习和基于vgg16的最优特征提取。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-08 DOI: 10.1186/s12880-024-01538-4
Meenakshi Devi P, Muna A, Yasser Ali, Sumanth V

Problem: Breast cancer is a leading cause of death among women, and early detection is crucial for improving survival rates. The manual breast cancer diagnosis utilizes more time and is subjective. Also, the previous CAD models mostly depend on manmade visual details that are complex to generalize across ultrasound images utilizing distinct techniques. Distinct imaging tools have been utilized in previous works such as mammography and MRI. However, these imaging tools are costly and less portable than ultrasound imaging. Also, ultrasound imaging is a non-invasive method commonly used for breast cancer screening. Hence, the paper presents a novel deep learning model, BCDNet, for classifying breast tumors as benign or malignant using ultrasound images.

Aim: The primary aim of the study is to design an effective breast cancer diagnosis model that can accurately classify tumors in their early stages, thus reducing mortality rates. The model aims to optimize the weight and parameters using the RPAOSM-ESO algorithm to enhance accuracy and minimize false negative rates.

Methods: The BCDNet model utilizes transfer learning from a pre-trained VGG16 network for feature extraction and employs an AHDNAM classification approach, which includes ASPP, DTCN, 1DCNN, and an attention mechanism. The RPAOSM-ESO algorithm is used to fine-tune the weights and parameters.

Results: The RPAOSM-ESO-BCDNet-based breast cancer diagnosis model provided 94.5 accuracy rates. This value is relatively higher than the previous models such as DTCN (88.2), 1DCNN (89.6), MobileNet (91.3), and ASPP-DTC-1DCNN-AM (93.8). Hence, it is guaranteed that the designed RPAOSM-ESO-BCDNet produces relatively accurate solutions for the classification than the previous models.

Conclusion: The BCDNet model, with its sophisticated feature extraction and classification techniques optimized by the RPAOSM-ESO algorithm, shows promise in accurately classifying breast tumors using ultrasound images. The study suggests that the model could be a valuable tool in the early detection of breast cancer, potentially saving lives and reducing the burden on healthcare systems.

问题:乳腺癌是妇女死亡的主要原因,早期发现对提高生存率至关重要。人工乳腺癌诊断费时、主观性强。此外,以前的CAD模型主要依赖于人造的视觉细节,这些细节很难利用不同的技术在超声图像中进行概括。不同的成像工具已在以往的工作中使用,如乳房x光检查和核磁共振成像。然而,这些成像工具比超声成像昂贵且便携性差。此外,超声成像是一种非侵入性方法,通常用于乳腺癌筛查。因此,本文提出了一种新的深度学习模型BCDNet,用于使用超声图像对乳腺肿瘤进行良性或恶性分类。目的:本研究的主要目的是设计一种有效的乳腺癌诊断模型,能够在早期准确地对肿瘤进行分类,从而降低死亡率。该模型旨在利用RPAOSM-ESO算法对权重和参数进行优化,以提高准确率和最小化假阴性率。方法:BCDNet模型利用预训练VGG16网络的迁移学习进行特征提取,并采用AHDNAM分类方法,该方法包括ASPP、DTCN、1DCNN和注意机制。采用RPAOSM-ESO算法对权重和参数进行微调。结果:基于rpaosm - eso - bcdnet的乳腺癌诊断模型准确率为94.5。这个值相对于之前的DTCN(88.2)、1DCNN(89.6)、MobileNet(91.3)、asp - dtc -1DCNN- am(93.8)等模型要高一些。因此,可以保证所设计的RPAOSM-ESO-BCDNet比以前的模型产生相对准确的分类解。结论:基于RPAOSM-ESO算法优化的BCDNet模型具有完善的特征提取和分类技术,有望实现超声图像对乳腺肿瘤的准确分类。该研究表明,该模型可能是早期发现乳腺癌的一个有价值的工具,有可能挽救生命并减轻医疗保健系统的负担。
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引用次数: 0
Ultrasound localization microscopy in the diagnosis of breast tumors and prediction of relevant histologic biomarkers associated with prognosis in humans: the protocol for a prospective, multicenter study. 超声定位显微镜在乳腺肿瘤诊断和与人类预后相关的相关组织学生物标志物预测中的应用:一项前瞻性、多中心研究的方案
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-08 DOI: 10.1186/s12880-024-01535-7
Jia Li, Lei Chen, Ronghui Wang, Jiang Zhu, Ao Li, Jianchun Li, Zhaojun Li, Wen Luo, Wenkun Bai, Tao Ying, Cong Wei, Di Sun, Yuanyi Zheng

Background: Benign and malignant breast tumors differ in their microvasculature morphology and distribution. Histologic biomarkers of malignant breast tumors are also correlated with the microvasculature. There is a lack of imaging technology for evaluating the microvasculature. Ultrasound localization microscopy (ULM) can provide detailed microvascular architecture at super-resolution. The objective of this trial is to explore the role of ULM in distinguishing benign from malignant breast tumors and to explore the correlations between ULM qualitative and quantitative parameters and histologic biomarkers in malignant breast tumors.

Methods/design: This prospective and multicenter study will include 83 patients with breast tumors that will undergo ULM. 55 patients will be assigned to the malignant group, and 28 patients will be assigned to the benign group. The primary outcome is the differences in the qualitative parameters (microvasculature morphology, distribution, and flow direction) between benign and malignant breast tumors on ULM. Secondary outcomes include (1) differences in the quantitative parameters (microvasculature density, tortuosity, diameter, and flow velocity) between benign and malignant breast tumors based on ULM; (2) diagnostic performance of the qualitative parameters in distinguishing benign and malignant breast tumors; (3) diagnostic performance of the quantitative parameters in distinguishing benign and malignant breast tumors; (4) relationships between the qualitative parameters and histologic biomarkers in malignant breast tumors; (5) relationships between the quantitative parameters and histologic biomarkers in malignant breast tumors; and (6) the evaluation of inter-reader and intra-reader reproducibility.

Discussion: Detecting vascularity in breast tumors is of great significance to differentiate benign from malignant tumors and to predict histologic biomarkers. These histologic biomarkers, such as ER, PR, HER2 and Ki67, are closely related to prognosis evaluation. This trial will provide maximum information about the microvasculature of breast tumors and thereby will help with the formulation of subsequent differential diagnosis and the prediction of histologic biomarkers.

Trial registration number/date: Chinese Clinical Trial Registry ChiCTR2100048361/6th/July/2021. This study is a part of that clinical trial.

背景:乳腺良性肿瘤和恶性肿瘤的微血管形态和分布不同。乳腺恶性肿瘤的组织学生物标志物也与微血管相关。目前缺乏评价微血管的影像学技术。超声定位显微镜(ULM)可以在超分辨率下提供详细的微血管结构。本试验的目的是探讨ULM在区分乳腺良恶性肿瘤中的作用,并探讨恶性乳腺肿瘤中ULM定性、定量参数与组织学生物标志物之间的相关性。方法/设计:这项前瞻性多中心研究将纳入83例接受ULM的乳腺肿瘤患者。恶性组55例,良性组28例。主要结果是在定性参数(微血管形态、分布和血流方向)的差异在乳腺肿瘤的良性和恶性ULM。次要结局包括(1)基于ULM的乳腺良恶性肿瘤定量参数(微血管密度、弯曲度、直径、流速)的差异;(2)定性参数在乳腺良恶性肿瘤鉴别中的诊断作用;(3)定量参数在乳腺良恶性肿瘤鉴别中的诊断价值;(4)乳腺恶性肿瘤定性参数与组织学生物标志物的关系;(5)乳腺恶性肿瘤定量参数与组织学生物标志物的关系;(6)评价阅读器间和阅读器内的可重复性。讨论:乳腺肿瘤血管的检测对区分肿瘤良恶性及预测组织生物标志物具有重要意义。这些组织学生物标志物,如ER、PR、HER2和Ki67,与预后评估密切相关。该试验将提供有关乳腺肿瘤微血管的最大信息,从而有助于制定后续的鉴别诊断和预测组织学生物标志物。试验注册号/日期:中国临床试验注册中心chictr2100048361 /6 /July/2021。这项研究是临床试验的一部分。
{"title":"Ultrasound localization microscopy in the diagnosis of breast tumors and prediction of relevant histologic biomarkers associated with prognosis in humans: the protocol for a prospective, multicenter study.","authors":"Jia Li, Lei Chen, Ronghui Wang, Jiang Zhu, Ao Li, Jianchun Li, Zhaojun Li, Wen Luo, Wenkun Bai, Tao Ying, Cong Wei, Di Sun, Yuanyi Zheng","doi":"10.1186/s12880-024-01535-7","DOIUrl":"10.1186/s12880-024-01535-7","url":null,"abstract":"<p><strong>Background: </strong>Benign and malignant breast tumors differ in their microvasculature morphology and distribution. Histologic biomarkers of malignant breast tumors are also correlated with the microvasculature. There is a lack of imaging technology for evaluating the microvasculature. Ultrasound localization microscopy (ULM) can provide detailed microvascular architecture at super-resolution. The objective of this trial is to explore the role of ULM in distinguishing benign from malignant breast tumors and to explore the correlations between ULM qualitative and quantitative parameters and histologic biomarkers in malignant breast tumors.</p><p><strong>Methods/design: </strong>This prospective and multicenter study will include 83 patients with breast tumors that will undergo ULM. 55 patients will be assigned to the malignant group, and 28 patients will be assigned to the benign group. The primary outcome is the differences in the qualitative parameters (microvasculature morphology, distribution, and flow direction) between benign and malignant breast tumors on ULM. Secondary outcomes include (1) differences in the quantitative parameters (microvasculature density, tortuosity, diameter, and flow velocity) between benign and malignant breast tumors based on ULM; (2) diagnostic performance of the qualitative parameters in distinguishing benign and malignant breast tumors; (3) diagnostic performance of the quantitative parameters in distinguishing benign and malignant breast tumors; (4) relationships between the qualitative parameters and histologic biomarkers in malignant breast tumors; (5) relationships between the quantitative parameters and histologic biomarkers in malignant breast tumors; and (6) the evaluation of inter-reader and intra-reader reproducibility.</p><p><strong>Discussion: </strong>Detecting vascularity in breast tumors is of great significance to differentiate benign from malignant tumors and to predict histologic biomarkers. These histologic biomarkers, such as ER, PR, HER2 and Ki67, are closely related to prognosis evaluation. This trial will provide maximum information about the microvasculature of breast tumors and thereby will help with the formulation of subsequent differential diagnosis and the prediction of histologic biomarkers.</p><p><strong>Trial registration number/date: </strong>Chinese Clinical Trial Registry ChiCTR2100048361/6th/July/2021. This study is a part of that clinical trial.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"25 1","pages":"13"},"PeriodicalIF":2.9,"publicationDate":"2025-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11715691/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142944072","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Consistency analysis of two US techniques for evaluating hepatic steatosis in patients with metabolic dysfunction-associated steatotic liver disease. 两种评估代谢功能障碍相关脂肪性肝病患者肝脂肪变性的美国技术的一致性分析
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-07 DOI: 10.1186/s12880-024-01549-1
Fei Chen, Jingjing An, Long Deng, Jing Wang, Ruiling He

Background: US tools to quantify hepatic steatosis have recently been made clinically available by different manufacturers, but comparative data on their consistency are lacking.

Objective: US tools to quantify hepatic steatosis have recently been made clinically available by different manufacturers, but comparative data on their consistency are lacking. The aim of our study was to compare the diagnostic consistency for evaluating hepatic steatosis by two different US techniques, hepatorenal index by B-mode Ratio and attenuation coefficient by attenuation imaging (ATI).

Methods: Patients with suspicion or previously diagnosed of metabolic dysfunction-associated steatotic liver disease (MASLD) who attended fatty liver consulting room from June 2023 to September 2023 were prospectively recruited. Patients underwent two different US techniques of B-mode Ratio and ATI, and laboratory test were collected. According to previously proposed cut-off values, B-mode Ratio ≥ 1.22, 1.42, 1.54, and ATI ≥ 0.62, 0.70, and 0.78 dB/cm/MH were used for assessing of mild, moderate, and severe hepatic steatosis, respectively. Kappa consistency test was used to evaluate the consistency of hepatic steatosis.

Results: A total of 62 patients were enrolled, including 44 males (71.0%) with an age of (41 ± 13) years and a body mass index of (27.0 ± 3.5) kg/m2. In the hyperlipidemia group, the B-mode Ratio and ATI were significantly higher than those in the non-hyperlipidemia group, with values of 1.68 ± 0.39 vs. 1.28 ± 0.35 (p = 0.001) and 0.74 ± 0.12 dB/cm/MH vs. 0.64 ± 0.11 dB/cm/MH (p = 0.005), respectively. The correlation coefficient between B-mode Ratio and ATI was 0.732 (p < 0.001). Using B-mode Ratio and ATI as diagnostic criteria for MASLD, the proportion of patients with MASLD was 79% and 82%, respectively. The Kappa coefficient for assessing MASLD was 0.90 (p < 0.001). Furthermore, these two different US techniques were used for grading hepatic steatosis, with no, mild, moderate, and severe steatosis accounting for 21%, 18%, 13%, and 48%, as well as 18%, 29%, 22%, and 31%, respectively. The linear weighted Kappa coefficient for staging hepatic steatosis was 0.78 (95% confidence interval: 0.68-0.87, p < 0.001).

Conclusion: The non-invasive methods of two different US techniques based on B-mode Ratio and ATI have good consistency for evaluating hepatic steatosis, and can be used for large-scale community screening.

背景:美国量化肝脂肪变性的工具最近在临床上由不同的制造商提供,但缺乏其一致性的比较数据。目的:美国量化肝脂肪变性的工具最近在临床上由不同的制造商提供,但缺乏其一致性的比较数据。本研究的目的是比较两种不同的超声技术(b型比的肝肾指数和衰减成像(ATI)的衰减系数)对肝脂肪变性的诊断一致性。方法:前瞻性招募于2023年6月至2023年9月在脂肪肝咨询室就诊的怀疑或先前诊断为代谢功能障碍相关脂肪变性肝病(MASLD)的患者。患者分别行B-mode Ratio和ATI两种不同的US技术,并收集实验室检查结果。根据先前提出的临界值,分别以B-mode Ratio≥1.22、1.42、1.54和ATI≥0.62、0.70和0.78 dB/cm/MH评估轻度、中度和重度肝脂肪变性。采用Kappa一致性试验评价肝脂肪变性的一致性。结果:共纳入62例患者,其中男性44例(71.0%),年龄(41±13)岁,体重指数(27.0±3.5)kg/m2。高脂血症组B-mode Ratio和ATI显著高于非高脂血症组,分别为1.68±0.39比1.28±0.35 (p = 0.001)和0.74±0.12 dB/cm/MH比0.64±0.11 dB/cm/MH (p = 0.005)。结论:基于B-mode Ratio和ATI的两种不同US技术对肝脂肪变性的无创评估方法具有较好的一致性,可用于大规模社区筛查。
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引用次数: 0
HistoNeXt: dual-mechanism feature pyramid network for cell nuclear segmentation and classification. HistoNeXt:用于细胞核分割和分类的双机制特征金字塔网络。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-07 DOI: 10.1186/s12880-025-01550-2
Junxiao Chen, Ruixue Wang, Wei Dong, Hua He, Shiyong Wang
<p><strong>Purpose: </strong>To develop an end-to-end convolutional neural network model for analyzing hematoxylin and eosin(H&E)-stained histological images, enhancing the performance and efficiency of nuclear segmentation and classification within the digital pathology workflow.</p><p><strong>Methods: </strong>We propose a dual-mechanism feature pyramid fusion technique that integrates nuclear segmentation and classification tasks to construct the HistoNeXt network model. HistoNeXt utilizes an encoder-decoder architecture, where the encoder, based on the advanced ConvNeXt convolutional framework, efficiently and accurately extracts multi-level abstract features from tissue images. These features are subsequently shared with the decoder. The decoder employs a dual-mechanism architecture: The first branch of the mechanism splits into two parallel paths for nuclear segmentation, producing nuclear pixel (NP) and horizontal and vertical distance (HV) predictions, while the second mechanism branch focuses on type prediction (TP). The NP and HV branches leverage densely connected blocks to facilitate layer-by-layer feature transmission and reuse, while the TP branch employs channel attention to adaptively focus on critical features. Comprehensive data augmentation including morphology-preserving geometric transformations and adaptive H&E channel adjustments was applied. To address class imbalance, type-aware sampling was applied. The model was evaluated on public tissue image datasets including CONSEP, PanNuke, CPM17, and KUMAR. The performance in nuclear segmentation was evaluated using the Dice Similarity Coefficient (DICE), the Aggregated Jaccard Index (AJI) and Panoptic Quality (PQ), and the classification performance was evaluated using F1 scores and category-specific F1 scores. In addition, computational complexity, measured in Giga Floating Point Operations Per Second (GFLOPS), was used as an indicator of resource consumption.</p><p><strong>Results: </strong>HistoNeXt demonstrated competitive performance across multiple datasets: achieving a DICE score of 0.874, an AJI of 0.722, and a PQ of 0.689 on the CPM17 dataset; a DICE score of 0.826, an AJI of 0.625, and a PQ of 0.565 on KUMAR; and performance comparable to Transformer-based models, such as CellViT-SAM-H, on PanNuke, with a binary PQ of 0.6794, a multi-class PQ of 0.4940, and an overall F1 score of 0.82. On the CONSEP dataset, it achieved a DICE score of 0.843, an AJI of 0.592, a PQ of 0.532, and an overall classification F1 score of 0.773. Specific F1 scores for various cell types were as follows: 0.653 for malignant or dysplastic epithelial cells, 0.516 for normal epithelial cells, 0.659 for inflammatory cells, and 0.587 for spindle cells. The tiny model's complexity was 33.7 GFLOPS.</p><p><strong>Conclusion: </strong>By integrating novel convolutional technology and employing a pyramid fusion of dual-mechanism characteristics, HistoNeXt enhances both the precision and efficiency of nu
目的:建立一个端到端的卷积神经网络模型,用于分析苏木精和伊红(H&E)染色的组织图像,提高数字病理工作流程中核分割和分类的性能和效率。方法:提出一种融合核分割和分类任务的双机制特征金字塔融合技术,构建HistoNeXt网络模型。HistoNeXt采用编码器-解码器架构,其中编码器基于先进的ConvNeXt卷积框架,有效准确地从组织图像中提取多级抽象特征。这些特征随后与解码器共享。解码器采用双机制架构:机制的第一个分支分为两条并行路径进行核分割,产生核像素(NP)和水平和垂直距离(HV)预测,而机制的第二个分支则专注于类型预测(TP)。NP和HV分支利用密集连接的块来促进逐层特征的传输和重用,而TP分支利用通道关注来自适应地关注关键特征。综合数据增强包括形态保持几何变换和自适应H&E通道调整。为了解决类不平衡问题,采用了类型感知抽样。该模型在包括CONSEP、PanNuke、CPM17和KUMAR在内的公共组织图像数据集上进行评估。采用Dice Similarity Coefficient (Dice)、aggregate Jaccard Index (AJI)和Panoptic Quality (PQ)对核分割性能进行评价,采用F1分数和类别特异性F1分数对分类性能进行评价。此外,计算复杂性(以每秒千兆浮点操作数(GFLOPS)衡量)被用作资源消耗的指标。结果:HistoNeXt在多个数据集上表现出具有竞争力的性能:在CPM17数据集上,DICE得分为0.874,AJI为0.722,PQ为0.689;KUMAR的DICE得分为0.826,AJI为0.625,PQ为0.565;性能可与PanNuke上基于transformer的模型(如cellviti - sam - h)相媲美,二进制PQ为0.6794,多类PQ为0.4940,F1总分为0.82。在CONSEP数据集上,其DICE得分为0.843,AJI得分为0.592,PQ得分为0.532,总体分类F1得分为0.773。不同细胞类型的特异性F1评分如下:恶性或发育不良上皮细胞为0.653,正常上皮细胞为0.516,炎症细胞为0.659,梭形细胞为0.587。这个微型模型的复杂度为33.7 GFLOPS。结论:HistoNeXt通过融合新的卷积技术和双机制特征的金字塔融合,提高了核分割和分类的精度和效率。其较低的计算复杂度使该模型非常适合在资源受限的环境中进行本地部署,从而支持广泛的临床和研究应用。这代表了卷积神经网络在数字病理分析中的应用取得了重大进展。
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引用次数: 0
Liver fibrosis stage classification in stacked microvascular images based on deep learning. 基于深度学习的堆叠微血管图像肝纤维化分期分类。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-07 DOI: 10.1186/s12880-024-01531-x
Daisuke Miura, Hiromi Suenaga, Rino Hiwatashi, Shingo Mabu

Background: Monitoring fibrosis in patients with chronic liver disease (CLD) is an important management strategy. We have already reported a novel stacked microvascular imaging (SMVI) technique and an examiner scoring evaluation method to improve fibrosis assessment accuracy and demonstrate its high sensitivity. In the present study, we analyzed the effectiveness and objectivity of SMVI in diagnosing the liver fibrosis stage based on artificial intelligence (AI).

Methods: This single-center, cross-sectional study included 517 patients with CLD who underwent ultrasonography and liver stiffness testing between August 2019 and October 2022. A convolutional neural network model was constructed to evaluate the degree of liver fibrosis from stacked microvascular images generated by accumulating high-sensitivity Doppler (i.e., high-definition color) images from these patients. In contrast, as a method of judgment by the human eye, we focused on three hallmarks of intrahepatic microvessel morphological changes in the stacked microvascular images: narrowing, caliber irregularity, and tortuosity. The degree of liver fibrosis was classified into five stages according to etiology based on liver stiffness measurement: F0-1Low (< 5.0 kPa), F0-1High (≥ 5.0 kPa), F2, F3, and F4.

Results: The AI classification accuracy was 53.8% for a 5-class classification, 66.3% for a 3-class classification (F0-1Low vs. F0-1High vs. F2-4), and 83.8% for a 2-class classification (F0-1 vs. F2-4). The diagnostic accuracy for ≥ F2 was 81.6% in the examiner's score assessment, compared with 83.8% in AI assessment, indicating that AI achieved higher diagnostic accuracy. Similarly, AI demonstrated higher sensitivity and specificity of 84.2% and 83.5%, respectively. Comparing human judgement with AI judgement, the AI analysis was a superior model with a higher F1 score in the 2-class classification.

Conclusions: In detecting significant fibrosis (≥ F2) using the SMVI method, AI-based assessments are more accurate than human judgement; moreover, AI-based SMVI analysis eliminating human subjectivity bias and determining patients with objective fibrosis development is considered an important improvement.

背景:监测慢性肝病(CLD)患者的纤维化是一项重要的管理策略。我们已经报道了一种新的堆叠微血管成像(SMVI)技术和一种检查者评分评估方法,以提高纤维化评估的准确性并证明其高灵敏度。在本研究中,我们分析了基于人工智能(AI)的SMVI诊断肝纤维化分期的有效性和客观性。方法:这项单中心横断面研究包括517例CLD患者,他们在2019年8月至2022年10月期间接受了超声检查和肝脏硬度测试。构建卷积神经网络模型,通过累积这些患者的高灵敏度多普勒(即高清彩色)图像生成的堆叠微血管图像来评估肝纤维化程度。相比之下,作为人眼判断的方法,我们重点关注了堆积的微血管图像中肝内微血管形态变化的三个特征:狭窄、口径不规则和扭曲。基于肝硬度测量,根据病因将肝纤维化程度分为5个阶段:F0-1Low(结果:5级AI分类准确率为53.8%,3级AI分类准确率为66.3% (F0-1Low vs F0-1High vs F2-4), 2级AI分类准确率为83.8% (F0-1 vs F2-4)。在主考官评分评估中,≥F2的诊断准确率为81.6%,而人工智能评估的诊断准确率为83.8%,表明人工智能的诊断准确率更高。同样,AI具有更高的敏感性和特异性,分别为84.2%和83.5%。人工判断与人工智能判断相比,人工智能分析在2类分类中具有更高的F1分,是一种更优的模型。结论:在使用SMVI方法检测显著纤维化(≥F2)时,基于人工智能的评估比人类判断更准确;此外,基于人工智能的SMVI分析消除了人为的主观性偏差,并确定了客观纤维化发展的患者,被认为是一个重要的改进。
{"title":"Liver fibrosis stage classification in stacked microvascular images based on deep learning.","authors":"Daisuke Miura, Hiromi Suenaga, Rino Hiwatashi, Shingo Mabu","doi":"10.1186/s12880-024-01531-x","DOIUrl":"https://doi.org/10.1186/s12880-024-01531-x","url":null,"abstract":"<p><strong>Background: </strong>Monitoring fibrosis in patients with chronic liver disease (CLD) is an important management strategy. We have already reported a novel stacked microvascular imaging (SMVI) technique and an examiner scoring evaluation method to improve fibrosis assessment accuracy and demonstrate its high sensitivity. In the present study, we analyzed the effectiveness and objectivity of SMVI in diagnosing the liver fibrosis stage based on artificial intelligence (AI).</p><p><strong>Methods: </strong>This single-center, cross-sectional study included 517 patients with CLD who underwent ultrasonography and liver stiffness testing between August 2019 and October 2022. A convolutional neural network model was constructed to evaluate the degree of liver fibrosis from stacked microvascular images generated by accumulating high-sensitivity Doppler (i.e., high-definition color) images from these patients. In contrast, as a method of judgment by the human eye, we focused on three hallmarks of intrahepatic microvessel morphological changes in the stacked microvascular images: narrowing, caliber irregularity, and tortuosity. The degree of liver fibrosis was classified into five stages according to etiology based on liver stiffness measurement: F0-1Low (< 5.0 kPa), F0-1High (≥ 5.0 kPa), F2, F3, and F4.</p><p><strong>Results: </strong>The AI classification accuracy was 53.8% for a 5-class classification, 66.3% for a 3-class classification (F0-1Low vs. F0-1High vs. F2-4), and 83.8% for a 2-class classification (F0-1 vs. F2-4). The diagnostic accuracy for ≥ F2 was 81.6% in the examiner's score assessment, compared with 83.8% in AI assessment, indicating that AI achieved higher diagnostic accuracy. Similarly, AI demonstrated higher sensitivity and specificity of 84.2% and 83.5%, respectively. Comparing human judgement with AI judgement, the AI analysis was a superior model with a higher F1 score in the 2-class classification.</p><p><strong>Conclusions: </strong>In detecting significant fibrosis (≥ F2) using the SMVI method, AI-based assessments are more accurate than human judgement; moreover, AI-based SMVI analysis eliminating human subjectivity bias and determining patients with objective fibrosis development is considered an important improvement.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"25 1","pages":"8"},"PeriodicalIF":2.9,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11706143/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142944116","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The value of multiparametric MRI radiomics and machine learning in predicting preoperative Ki-67 expression level in breast cancer. 多参数MRI放射组学和机器学习在预测乳腺癌术前Ki-67表达水平中的价值。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-07 DOI: 10.1186/s12880-025-01553-z
Yan Lu, Long Jin, Ning Ding, Mengjuan Li, Shengnan Yin, Yiding Ji

Objective: This study was to develop a multi-parametric MRI radiomics model to predict preoperative Ki-67 status.

Materials and methods: A total of 120 patients with pathologically confirmed breast cancer were retrospectively enrolled and randomly divided into a training set (n = 84) and a validation set (n = 36). Radiomic features were derived from both the intratumoral and peritumoral regions, extending 5 mm from the tumor boundary, using magnetic resonance imaging (MRI). The MRI sequences employed included T2-weighted imaging (T2WI), dynamic contrast-enhanced (DCE) imaging, diffusion-weighted imaging (DWI), and apparent diffusion coefficient (ADC) maps. The T-test and the Least Absolute Shrinkage and Selection Operator Cross-Validation (LASSO CV) were conducted for feature selection. Modelintra, modelperi, modelintra+peri were established by eleven supervised machine learning (ML) algorithms to predict the expression status of Ki-67 in breast cancer and were verified by the validation groups. The model's performance was evaluated by employing metrics such as the area under the curve (AUC), accuracy, sensitivity, and specificity.

Results: The features of intratumor, peritumor, intratumor + peritumor were extracted 851, 851 and 1702 samples respectively, 14, 23 and 35 features were selected by LASSO. ML algorithms based on modelintra and modelperi consistently yield AUCs that are below 80% in the validation set. Hower, Logistic regression (LR) and linear discriminant analysis (LDA) based on modelintra+peri demonstrated significant advantages over other algorithms, achieving AUCs of 0.92 and 0.98, accuracies of 0.94 and 0.97, sensitivities of 1 and 0.96, and specificities of 0.85 and 1 respectively in the validation set.

Conclusion: The integrated intra- and peritumoral radiomics model, developed using multiparametric MRI data and machine learning classifiers, exhibits significant predictive power for Ki-67 expression levels. This model could facilitate personalized clinical treatment strategies for individuals diagnosed with breast cancer (BC).

Clinical trial number: Not applicable.

目的:建立多参数MRI放射组学模型预测术前Ki-67状态。材料与方法:回顾性纳入120例经病理证实的乳腺癌患者,随机分为训练组(n = 84)和验证组(n = 36)。使用磁共振成像(MRI)从肿瘤边界延伸5mm的肿瘤内和肿瘤周围区域获得放射学特征。MRI序列包括t2加权成像(T2WI)、动态对比增强成像(DCE)、弥散加权成像(DWI)和表观扩散系数(ADC)图。进行t检验和最小绝对收缩和选择算子交叉验证(LASSO CV)进行特征选择。采用11种有监督机器学习(ML)算法建立模型intra、modelperi、Modelintra +peri,预测Ki-67在乳腺癌中的表达状态,并由验证组进行验证。通过采用曲线下面积(AUC)、准确性、灵敏度和特异性等指标来评估模型的性能。结果:分别提取瘤内、瘤周、瘤内+瘤周特征851例、851例、1702例,LASSO提取特征14例、23例、35例。基于modelintra和modelperi的ML算法在验证集中始终产生低于80%的auc。然而,基于modelintra+周期的Logistic回归(LR)和线性判别分析(LDA)在验证集中的auc分别为0.92和0.98,准确率分别为0.94和0.97,灵敏度分别为1和0.96,特异性分别为0.85和1,优于其他算法。结论:利用多参数MRI数据和机器学习分类器建立的肿瘤内和肿瘤周围放射组学综合模型对Ki-67表达水平具有显著的预测能力。该模型可以促进诊断为乳腺癌(BC)的个体的个性化临床治疗策略。临床试验号:不适用。
{"title":"The value of multiparametric MRI radiomics and machine learning in predicting preoperative Ki-67 expression level in breast cancer.","authors":"Yan Lu, Long Jin, Ning Ding, Mengjuan Li, Shengnan Yin, Yiding Ji","doi":"10.1186/s12880-025-01553-z","DOIUrl":"https://doi.org/10.1186/s12880-025-01553-z","url":null,"abstract":"<p><strong>Objective: </strong>This study was to develop a multi-parametric MRI radiomics model to predict preoperative Ki-67 status.</p><p><strong>Materials and methods: </strong>A total of 120 patients with pathologically confirmed breast cancer were retrospectively enrolled and randomly divided into a training set (n = 84) and a validation set (n = 36). Radiomic features were derived from both the intratumoral and peritumoral regions, extending 5 mm from the tumor boundary, using magnetic resonance imaging (MRI). The MRI sequences employed included T2-weighted imaging (T2WI), dynamic contrast-enhanced (DCE) imaging, diffusion-weighted imaging (DWI), and apparent diffusion coefficient (ADC) maps. The T-test and the Least Absolute Shrinkage and Selection Operator Cross-Validation (LASSO CV) were conducted for feature selection. Model<sub>intra</sub>, model<sub>peri</sub>, model<sub>intra+peri</sub> were established by eleven supervised machine learning (ML) algorithms to predict the expression status of Ki-67 in breast cancer and were verified by the validation groups. The model's performance was evaluated by employing metrics such as the area under the curve (AUC), accuracy, sensitivity, and specificity.</p><p><strong>Results: </strong>The features of intratumor, peritumor, intratumor + peritumor were extracted 851, 851 and 1702 samples respectively, 14, 23 and 35 features were selected by LASSO. ML algorithms based on model<sub>intra</sub> and model<sub>peri</sub> consistently yield AUCs that are below 80% in the validation set. Hower, Logistic regression (LR) and linear discriminant analysis (LDA) based on model<sub>intra+peri</sub> demonstrated significant advantages over other algorithms, achieving AUCs of 0.92 and 0.98, accuracies of 0.94 and 0.97, sensitivities of 1 and 0.96, and specificities of 0.85 and 1 respectively in the validation set.</p><p><strong>Conclusion: </strong>The integrated intra- and peritumoral radiomics model, developed using multiparametric MRI data and machine learning classifiers, exhibits significant predictive power for Ki-67 expression levels. This model could facilitate personalized clinical treatment strategies for individuals diagnosed with breast cancer (BC).</p><p><strong>Clinical trial number: </strong>Not applicable.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"25 1","pages":"11"},"PeriodicalIF":2.9,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11707864/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142944118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Application value of CT three-dimensional reconstruction technology in the identification of benign and malignant lung nodules and the characteristics of nodule distribution. CT三维重建技术在肺良恶性结节鉴别中的应用价值及结节分布特征
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-06 DOI: 10.1186/s12880-024-01505-z
Guanghai Ji, Fei Liu, Zhiqiang Chen, Jie Peng, Hao Deng, Sheng Xiao, Yun Li

Objective: The study aimed to evaluate the application value of computed tomography (CT) three-dimensional (3D) reconstruction technology in identifying benign and malignant lung nodules and characterizing the distribution of the nodules.

Methods: CT 3D reconstruction was performed for lung nodules. Pathological results were used as the gold standard to compare the detection rates of various lung nodule signs between conventional chest CT scanning and CT 3D reconstruction techniques. Additionally, the differences in mean diffusion coefficient values and partial anisotropy index values between male and female patients were analyzed.

Results: Pathologic confirmation identified 30 patients with benign lesions and 45 patients with malignant lesions. CT 3D reconstruction demonstrated higher diagnostic accuracy for lung nodule imaging signs compared to conventional CT scanning (P < 0.05). The mean diffusion coefficient values and partial anisotropy index values were lower in female patients compared to male patients in the lung nodule lesion area, lung perinodular edema area, and normal lung tissue (P < 0.05). Conventional CT scanning showed a benign accuracy rate of 63.33% and a malignant accuracy rate of 60.00%, whereas CT 3D imaging achieved a benign and malignant accuracy rate of 86.67% for both. The accuracy rates for CT 3D imaging were significantly higher than those for conventional CT scanning (P < 0.05).

Conclusion: CT 3D imaging technology demonstrates high diagnostic accuracy in differentiating benign from malignant lung nodules.

目的:探讨计算机断层扫描(CT)三维重建技术在鉴别肺良恶性结节及结节分布特征中的应用价值。方法:对肺结节进行CT三维重建。以病理结果为金标准,比较常规胸部CT扫描与CT三维重建技术对各种肺结节征象的检出率。分析男女患者的平均扩散系数值和部分各向异性指数值的差异。结果:病理证实良性病变30例,恶性病变45例。结论:CT三维成像技术对肺结节良恶性鉴别具有较高的诊断准确性。
{"title":"Application value of CT three-dimensional reconstruction technology in the identification of benign and malignant lung nodules and the characteristics of nodule distribution.","authors":"Guanghai Ji, Fei Liu, Zhiqiang Chen, Jie Peng, Hao Deng, Sheng Xiao, Yun Li","doi":"10.1186/s12880-024-01505-z","DOIUrl":"https://doi.org/10.1186/s12880-024-01505-z","url":null,"abstract":"<p><strong>Objective: </strong>The study aimed to evaluate the application value of computed tomography (CT) three-dimensional (3D) reconstruction technology in identifying benign and malignant lung nodules and characterizing the distribution of the nodules.</p><p><strong>Methods: </strong>CT 3D reconstruction was performed for lung nodules. Pathological results were used as the gold standard to compare the detection rates of various lung nodule signs between conventional chest CT scanning and CT 3D reconstruction techniques. Additionally, the differences in mean diffusion coefficient values and partial anisotropy index values between male and female patients were analyzed.</p><p><strong>Results: </strong>Pathologic confirmation identified 30 patients with benign lesions and 45 patients with malignant lesions. CT 3D reconstruction demonstrated higher diagnostic accuracy for lung nodule imaging signs compared to conventional CT scanning (P < 0.05). The mean diffusion coefficient values and partial anisotropy index values were lower in female patients compared to male patients in the lung nodule lesion area, lung perinodular edema area, and normal lung tissue (P < 0.05). Conventional CT scanning showed a benign accuracy rate of 63.33% and a malignant accuracy rate of 60.00%, whereas CT 3D imaging achieved a benign and malignant accuracy rate of 86.67% for both. The accuracy rates for CT 3D imaging were significantly higher than those for conventional CT scanning (P < 0.05).</p><p><strong>Conclusion: </strong>CT 3D imaging technology demonstrates high diagnostic accuracy in differentiating benign from malignant lung nodules.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"25 1","pages":"7"},"PeriodicalIF":2.9,"publicationDate":"2025-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11702159/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142944156","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Automatic image generation and stage prediction of breast cancer immunobiological through a proposed IHC-GAN model. 通过提出的IHC-GAN模型自动图像生成和乳腺癌免疫生物学分期预测。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-01-06 DOI: 10.1186/s12880-024-01522-y
Afaf Saad, Noha Ghatwary, Safa M Gasser, Mohamed S ElMahallawy

Invasive breast cancer diagnosis and treatment planning require an accurate assessment of human epidermal growth factor receptor 2 (HER2) expression levels. While immunohistochemical techniques (IHC) are the gold standard for HER2 evaluation, their implementation can be resource-intensive and costly. To reduce these obstacles and expedite the procedure, we present an efficient deep-learning model that generates high-quality IHC-stained images directly from Hematoxylin and Eosin (H&E) stained images. We propose a new IHC-GAN that enhances the Pix2PixHD model into a dual generator module, improving its performance and simplifying its structure. Furthermore, to strengthen feature extraction for HE-stained image classification, we integrate MobileNetV3 as the backbone network. The extracted features are then merged with those generated by the generator to improve overall performance. Moreover, the decoder's performance is enhanced by providing the related features from the classified labels by incorporating the adaptive instance normalization technique. The proposed IHC-GAN was trained and validated on a comprehensive dataset comprising 4,870 registered image pairs, encompassing a spectrum of HER2 expression levels. Our findings demonstrate promising results in translating H&E images to IHC-equivalent representations, offering a potential solution to reduce the costs associated with traditional HER2 assessment methods. We extensively validate our model and the current dataset. We compare it with state-of-the-art techniques, achieving high performance using different evaluation metrics, showing 0.0927 FID, 22.87 PSNR, and 0.3735 SSIM. The proposed approach exhibits significant enhancements over current GAN models, including an 88% reduction in Frechet Inception Distance (FID), a 4% enhancement in Learned Perceptual Image Patch Similarity (LPIPS), a 10% increase in Peak Signal-to-Noise Ratio (PSNR), and a 45% reduction in Mean Squared Error (MSE). This advancement holds significant potential for enhancing efficiency, reducing manpower requirements, and facilitating timely treatment decisions in breast cancer care.

侵袭性乳腺癌的诊断和治疗计划需要准确评估人表皮生长因子受体2 (HER2)的表达水平。虽然免疫组织化学技术(IHC)是HER2评估的金标准,但其实施可能是资源密集型和昂贵的。为了减少这些障碍并加快过程,我们提出了一种高效的深度学习模型,该模型直接从苏木精和伊红(H&E)染色图像中生成高质量的ihc染色图像。我们提出了一种新的IHC-GAN,将Pix2PixHD模型增强为双发生器模块,提高了其性能并简化了其结构。此外,为了加强he染色图像分类的特征提取,我们集成了MobileNetV3作为骨干网络。然后将提取的特征与生成器生成的特征合并,以提高整体性能。此外,通过结合自适应实例归一化技术提供分类标签的相关特征,提高了解码器的性能。提出的IHC-GAN在包含4,870个注册图像对的综合数据集上进行了训练和验证,包括HER2表达水平的谱。我们的研究结果表明,在将H&E图像转换为ihc等效表示方面取得了可喜的成果,为降低与传统HER2评估方法相关的成本提供了一种潜在的解决方案。我们广泛地验证了我们的模型和当前数据集。我们将其与最先进的技术进行比较,使用不同的评估指标实现高性能,显示出0.0927 FID, 22.87 PSNR和0.3735 SSIM。与目前的GAN模型相比,该方法具有显著的增强,包括Frechet Inception Distance (FID)降低88%,Learned Perceptual Image Patch Similarity (LPIPS)提高4%,峰值信噪比(PSNR)提高10%,均方误差(MSE)降低45%。这一进展在提高乳腺癌护理效率、减少人力需求和促进及时治疗决策方面具有重大潜力。
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