Pub Date : 2024-11-12DOI: 10.1186/s12880-024-01481-4
Fengli Jiang, Chuanjun Xu, Yu Wang, Qiuzhen Xu
Background: To explore the value of computed tomography based radiomics in the differential diagnosis of drug-sensitive and drug-resistant pulmonary tuberculosis.
Methods: The clinical and computed tomography image data of 177 patients who were diagnosed with pulmonary tuberculosis through sputum culture and completed drug-susceptibility testing from April 2018 to December 2020 at the Second Hospital of Nanjing were retrospectively analyzed. Patients with drug-resistant pulmonary tuberculosis (n = 78) and drug-sensitive pulmonary tuberculosis (n = 99) were randomly divided into a training set (n = 124) and a validation set (n = 53) at a ratio of 7:3. Regions of interest were drawn to delineate the lesions and radiomics features were extracted from non-contrast computed tomography images. A radiomics signature based on the valuable radiomics features was constructed and a radiomics score was calculated. Demographic data, clinical symptoms, laboratory results and computed tomography imaging characteristics were evaluated to establish a clinical model. Combined with the Rad-score and clinical factors, a radiomics-clinical model nomogram was constructed.
Results: Thirteen features were used to construct the radiomics signature. The radiomics signature showed good discrimination in the training set (area under the curve (AUC), 0.891; 95% confidence interval (CI), 0.832-0.951) and the validation set (AUC, 0.803; 95% CI, 0.674-0.932). In the clinical model, the AUC of the training set was 0.780(95% CI, 0.700-0.859), while the AUC of the validation set was 0.692 (95% CI, 0.546-0.839). The radiomics-clinical model showed good calibration and discrimination in the training set (AUC, 0.932;95% CI, 0.888-0.977) and the validation set (AUC, 0.841; 95% CI, 0.719-0.962).
Conclusions: Simple radiomics signature is of great value in differentiating drug-sensitive and drug-resistant pulmonary tuberculosis patients. The radiomics-clinical model nomogram showed good predictive, which may help clinicians formulate precise treatments.
{"title":"A CT-based radiomics analyses for differentiating drug‑resistant and drug-sensitive pulmonary tuberculosis.","authors":"Fengli Jiang, Chuanjun Xu, Yu Wang, Qiuzhen Xu","doi":"10.1186/s12880-024-01481-4","DOIUrl":"10.1186/s12880-024-01481-4","url":null,"abstract":"<p><strong>Background: </strong>To explore the value of computed tomography based radiomics in the differential diagnosis of drug-sensitive and drug-resistant pulmonary tuberculosis.</p><p><strong>Methods: </strong>The clinical and computed tomography image data of 177 patients who were diagnosed with pulmonary tuberculosis through sputum culture and completed drug-susceptibility testing from April 2018 to December 2020 at the Second Hospital of Nanjing were retrospectively analyzed. Patients with drug-resistant pulmonary tuberculosis (n = 78) and drug-sensitive pulmonary tuberculosis (n = 99) were randomly divided into a training set (n = 124) and a validation set (n = 53) at a ratio of 7:3. Regions of interest were drawn to delineate the lesions and radiomics features were extracted from non-contrast computed tomography images. A radiomics signature based on the valuable radiomics features was constructed and a radiomics score was calculated. Demographic data, clinical symptoms, laboratory results and computed tomography imaging characteristics were evaluated to establish a clinical model. Combined with the Rad-score and clinical factors, a radiomics-clinical model nomogram was constructed.</p><p><strong>Results: </strong>Thirteen features were used to construct the radiomics signature. The radiomics signature showed good discrimination in the training set (area under the curve (AUC), 0.891; 95% confidence interval (CI), 0.832-0.951) and the validation set (AUC, 0.803; 95% CI, 0.674-0.932). In the clinical model, the AUC of the training set was 0.780(95% CI, 0.700-0.859), while the AUC of the validation set was 0.692 (95% CI, 0.546-0.839). The radiomics-clinical model showed good calibration and discrimination in the training set (AUC, 0.932;95% CI, 0.888-0.977) and the validation set (AUC, 0.841; 95% CI, 0.719-0.962).</p><p><strong>Conclusions: </strong>Simple radiomics signature is of great value in differentiating drug-sensitive and drug-resistant pulmonary tuberculosis patients. The radiomics-clinical model nomogram showed good predictive, which may help clinicians formulate precise treatments.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"307"},"PeriodicalIF":2.9,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11556181/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142613830","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-11DOI: 10.1186/s12880-024-01491-2
Meng Qi, Weiding Zhou, Ying Yuan, Yang Song, Duo Zhang, Jiliang Ren
Background: To compare the performance of whole tumor and habitats-based computed tomography (CT) radiomics for predicting immunophenotyping in laryngeal squamous cell carcinomas (LSCC) and further evaluate the stratified effect of the radiomics model on disease-free survival (DFS) and overall survival (OS) of LSCC patients.
Methods: In all, 106 LSCC patients (40 with inflamed and 66 with non-inflamed immunophenotyping) were randomly assigned into a training (n = 53) and testing (n = 53) cohort. Briefly, 750 radiomics features from contrast-enhanced CT images were respectively extracted from the whole tumor and two Otsu method-derived subregions. Intraclass correlation coefficients (ICCs) were calculated to evaluate the reproducibility. The radiomics models for predicting immunophenotyping were respectively created using K-nearest neighbors (KNN), logistic regression (LR), and Naive bayes (NB) classifiers. The performance of models in the testing cohort were compared using area under the curve (AUC). The prognostic value of the optimal model was determined by survival analysis.
Results: The radiomics features derived from whole tumor showed better reproducibility than those derived from habitats. The best model for the whole tumor (LR classifier) showed superior performance than that for the habitats (KNN classifier) in the testing cohort, but there were no significant differences (AUC: 0.741 vs. 0.611, p = 0.112). Multivariable Cox regression analysis showed that the immunophenotyping predicted by the optimal model was an independent risk factor of unfavorable DFS (p = 0.009) and OS (p = 0.008) in LSCC patients.
Conclusions: Whole tumor-based CT radiomics could serve as a potential predictive biomarker of immunophenotyping and outcome prediction in LSCC patients.
{"title":"Computed tomography radiomics reveals prognostic value of immunophenotyping in laryngeal squamous cell carcinoma: a comparison of whole tumor- versus habitats-based approaches.","authors":"Meng Qi, Weiding Zhou, Ying Yuan, Yang Song, Duo Zhang, Jiliang Ren","doi":"10.1186/s12880-024-01491-2","DOIUrl":"10.1186/s12880-024-01491-2","url":null,"abstract":"<p><strong>Background: </strong>To compare the performance of whole tumor and habitats-based computed tomography (CT) radiomics for predicting immunophenotyping in laryngeal squamous cell carcinomas (LSCC) and further evaluate the stratified effect of the radiomics model on disease-free survival (DFS) and overall survival (OS) of LSCC patients.</p><p><strong>Methods: </strong>In all, 106 LSCC patients (40 with inflamed and 66 with non-inflamed immunophenotyping) were randomly assigned into a training (n = 53) and testing (n = 53) cohort. Briefly, 750 radiomics features from contrast-enhanced CT images were respectively extracted from the whole tumor and two Otsu method-derived subregions. Intraclass correlation coefficients (ICCs) were calculated to evaluate the reproducibility. The radiomics models for predicting immunophenotyping were respectively created using K-nearest neighbors (KNN), logistic regression (LR), and Naive bayes (NB) classifiers. The performance of models in the testing cohort were compared using area under the curve (AUC). The prognostic value of the optimal model was determined by survival analysis.</p><p><strong>Results: </strong>The radiomics features derived from whole tumor showed better reproducibility than those derived from habitats. The best model for the whole tumor (LR classifier) showed superior performance than that for the habitats (KNN classifier) in the testing cohort, but there were no significant differences (AUC: 0.741 vs. 0.611, p = 0.112). Multivariable Cox regression analysis showed that the immunophenotyping predicted by the optimal model was an independent risk factor of unfavorable DFS (p = 0.009) and OS (p = 0.008) in LSCC patients.</p><p><strong>Conclusions: </strong>Whole tumor-based CT radiomics could serve as a potential predictive biomarker of immunophenotyping and outcome prediction in LSCC patients.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"304"},"PeriodicalIF":2.9,"publicationDate":"2024-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11555894/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142613741","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-11DOI: 10.1186/s12880-024-01484-1
Li Li, Changjie Pan, Ming Zhang, Dong Shen, Guangyuan He, Mingzhu Meng
Background: This study aims to explore the accuracy of Convolutional Neural Network (CNN) models in predicting malignancy in Dynamic Contrast-Enhanced Breast Magnetic Resonance Imaging (DCE-BMRI).
Methods: A total of 273 benign lesions (benign group) and 274 malignant lesions (malignant group) were collected and randomly divided into a training set (246 benign and 245 malignant lesions) and a testing set (28 benign and 28 malignant lesions) in a 9:1 ratio. An additional 53 lesions from 53 patients were designated as the validation set. Five models-VGG16, VGG19, DenseNet201, ResNet50, and MobileNetV2-were evaluated. Model performance was assessed using accuracy (Ac) in the training and testing sets, and precision (Pr), recall (Rc), F1 score (F1), and area under the receiver operating characteristic curve (AUC) in the validation set.
Results: The accuracy of VGG19 on the test set (0.96) is higher than that of VGG16 (0.91), DenseNet201 (0.91), ResNet50 (0.67), and MobileNetV2 (0.88). For the validation set, VGG19 achieved higher performance metrics (Pr 0.75, Rc 0.76, F1 0.73, AUC 0.76) compared to the other models, specifically VGG16 (Pr 0.73, Rc 0.75, F1 0.70, AUC 0.73), DenseNet201 (Pr 0.71, Rc 0.74, F1 0.69, AUC 0.71), ResNet50 (Pr 0.65, Rc 0.68, F1 0.60, AUC 0.65), and MobileNetV2 (Pr 0.73, Rc 0.75, F1 0.71, AUC 0.73). S4 model achieved higher performance metrics (Pr 0.89, Rc 0.88, F1 0.87, AUC 0.89) compared to the other four fine-tuned models, specifically S1 (Pr 0.75, Rc 0.76, F1 0.74, AUC 0.75), S2 (Pr 0.77, Rc 0.79, F1 0.75, AUC 0.77), S3 (Pr 0.76, Rc 0.76, F1 0.73, AUC 0.75), and S5 (Pr 0.77, Rc 0.79, F1 0.75, AUC 0.77). Additionally, S4 model showed the lowest loss value in the testing set. Notably, the AUC of S4 for BI-RADS 3 was 0.90 and for BI-RADS 4 was 0.86, both significantly higher than the 0.65 AUC for BI-RADS 5.
Conclusions: The S4 model we propose has demonstrated superior performance in predicting the likelihood of malignancy in DCE-BMRI, making it a promising candidate for clinical application in patients with breast diseases. However, further validation is essential, highlighting the need for additional data to confirm its efficacy.
{"title":"Predicting malignancy in breast lesions: enhancing accuracy with fine-tuned convolutional neural network models.","authors":"Li Li, Changjie Pan, Ming Zhang, Dong Shen, Guangyuan He, Mingzhu Meng","doi":"10.1186/s12880-024-01484-1","DOIUrl":"10.1186/s12880-024-01484-1","url":null,"abstract":"<p><strong>Background: </strong>This study aims to explore the accuracy of Convolutional Neural Network (CNN) models in predicting malignancy in Dynamic Contrast-Enhanced Breast Magnetic Resonance Imaging (DCE-BMRI).</p><p><strong>Methods: </strong>A total of 273 benign lesions (benign group) and 274 malignant lesions (malignant group) were collected and randomly divided into a training set (246 benign and 245 malignant lesions) and a testing set (28 benign and 28 malignant lesions) in a 9:1 ratio. An additional 53 lesions from 53 patients were designated as the validation set. Five models-VGG16, VGG19, DenseNet201, ResNet50, and MobileNetV2-were evaluated. Model performance was assessed using accuracy (Ac) in the training and testing sets, and precision (Pr), recall (Rc), F1 score (F1), and area under the receiver operating characteristic curve (AUC) in the validation set.</p><p><strong>Results: </strong>The accuracy of VGG19 on the test set (0.96) is higher than that of VGG16 (0.91), DenseNet201 (0.91), ResNet50 (0.67), and MobileNetV2 (0.88). For the validation set, VGG19 achieved higher performance metrics (Pr 0.75, Rc 0.76, F1 0.73, AUC 0.76) compared to the other models, specifically VGG16 (Pr 0.73, Rc 0.75, F1 0.70, AUC 0.73), DenseNet201 (Pr 0.71, Rc 0.74, F1 0.69, AUC 0.71), ResNet50 (Pr 0.65, Rc 0.68, F1 0.60, AUC 0.65), and MobileNetV2 (Pr 0.73, Rc 0.75, F1 0.71, AUC 0.73). S4 model achieved higher performance metrics (Pr 0.89, Rc 0.88, F1 0.87, AUC 0.89) compared to the other four fine-tuned models, specifically S1 (Pr 0.75, Rc 0.76, F1 0.74, AUC 0.75), S2 (Pr 0.77, Rc 0.79, F1 0.75, AUC 0.77), S3 (Pr 0.76, Rc 0.76, F1 0.73, AUC 0.75), and S5 (Pr 0.77, Rc 0.79, F1 0.75, AUC 0.77). Additionally, S4 model showed the lowest loss value in the testing set. Notably, the AUC of S4 for BI-RADS 3 was 0.90 and for BI-RADS 4 was 0.86, both significantly higher than the 0.65 AUC for BI-RADS 5.</p><p><strong>Conclusions: </strong>The S4 model we propose has demonstrated superior performance in predicting the likelihood of malignancy in DCE-BMRI, making it a promising candidate for clinical application in patients with breast diseases. However, further validation is essential, highlighting the need for additional data to confirm its efficacy.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"303"},"PeriodicalIF":2.9,"publicationDate":"2024-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11552211/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142614003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-06DOI: 10.1186/s12880-024-01480-5
Qiao Shi, Yajing Hao, Huixian Liu, Xiaoling Liu, Weiqiang Yan, Jun Mao, Bihong T Chen
Background: Crohn's disease is a severe chronic and relapsing inflammatory bowel disease. Although contrast-enhanced computed tomography enterography is commonly used to evaluate crohn's disease, its imaging findings are often nonspecific and can overlap with other bowel diseases. Recent studies have explored the application of radiomics-based machine learning algorithms to aid in the diagnosis of medical images. This study aims to develop a non-invasive method for detecting bowel lesions associated with Crohn's disease using CT enterography radiomics and machine learning algorithms.
Methods: A total of 139 patients with pathologically confirmed Crohn's disease were retrospectively enrolled in this study. Radiomics features were extracted from both arterial- and venous-phase CT enterography images, representing both bowel lesions with Crohn's disease and segments of normal bowel. A machine learning classification system was constructed by combining six selected radiomics features with eight classification algorithms. The models were trained using leave-one-out cross-validation and evaluated for accuracy.
Results: The classification model demonstrated robust performance and high accuracy, with an area under the curve of 0.938 and 0.961 for the arterial- and venous-phase images, respectively. The model achieved an accuracy of 0.938 for arterial-phase images and 0.961 for venous-phase images.
Conclusions: This study successfully identified a radiomics machine learning method that effectively differentiates Crohn's disease bowel lesions from normal bowel segments. Further studies with larger sample sizes and external cohorts are needed to validate these findings.
{"title":"Computed tomography enterography radiomics and machine learning for identification of Crohn's disease.","authors":"Qiao Shi, Yajing Hao, Huixian Liu, Xiaoling Liu, Weiqiang Yan, Jun Mao, Bihong T Chen","doi":"10.1186/s12880-024-01480-5","DOIUrl":"10.1186/s12880-024-01480-5","url":null,"abstract":"<p><strong>Background: </strong>Crohn's disease is a severe chronic and relapsing inflammatory bowel disease. Although contrast-enhanced computed tomography enterography is commonly used to evaluate crohn's disease, its imaging findings are often nonspecific and can overlap with other bowel diseases. Recent studies have explored the application of radiomics-based machine learning algorithms to aid in the diagnosis of medical images. This study aims to develop a non-invasive method for detecting bowel lesions associated with Crohn's disease using CT enterography radiomics and machine learning algorithms.</p><p><strong>Methods: </strong>A total of 139 patients with pathologically confirmed Crohn's disease were retrospectively enrolled in this study. Radiomics features were extracted from both arterial- and venous-phase CT enterography images, representing both bowel lesions with Crohn's disease and segments of normal bowel. A machine learning classification system was constructed by combining six selected radiomics features with eight classification algorithms. The models were trained using leave-one-out cross-validation and evaluated for accuracy.</p><p><strong>Results: </strong>The classification model demonstrated robust performance and high accuracy, with an area under the curve of 0.938 and 0.961 for the arterial- and venous-phase images, respectively. The model achieved an accuracy of 0.938 for arterial-phase images and 0.961 for venous-phase images.</p><p><strong>Conclusions: </strong>This study successfully identified a radiomics machine learning method that effectively differentiates Crohn's disease bowel lesions from normal bowel segments. Further studies with larger sample sizes and external cohorts are needed to validate these findings.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"302"},"PeriodicalIF":2.9,"publicationDate":"2024-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11542238/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142590063","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Correction: CT coronary fractional flow reserve based on artificial intelligence using different software: a repeatability study.","authors":"Jing Li, Zhenxing Yang, Zhenting Sun, Lei Zhao, Aishi Liu, Xing Wang, Qiyu Jin, Guoyu Zhang","doi":"10.1186/s12880-024-01485-0","DOIUrl":"10.1186/s12880-024-01485-0","url":null,"abstract":"","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"301"},"PeriodicalIF":2.9,"publicationDate":"2024-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11539802/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142581837","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-05DOI: 10.1186/s12880-024-01477-0
Ruifang Xu, Wanwan Wen, Yanning Zhang, Linxue Qian, Yujiang Liu
Background: Follicular thyroid carcinoma (FTC) is the second most common cancer of the thyroid gland and has a greater propensity for haematogenous metastasis. However, the preoperative differentiation of FTC from follicular thyroid adenoma (FTA) is not well established. Certain ultrasound characteristics are associated with an increased risk of thyroid malignancy, but mainly for papillary thyroid cancers and not for FTC.
Objectives: This retrospective study aimed to evaluate the ultrasound characteristics of FTC and the value of ultrasound characteristics in differentiating FTC from FTA.
Methods: A total of 96 patients with pathologically confirmed FTC or FTA who underwent preoperative thyroid ultrasound were included in this study. The ultrasound and pathological characteristics were evaluated.
Results: Our data revealed that the incidences of lesions with tubercle-in-nodule, spiculated/microlobulated margins, mixed vascularization, egg-shell calcification, central stellate scarring, extension toward the capsule and chronic lymphocytic thyroiditis were significantly higher in the FTC group (all p < 0.05). After adjusting for confounding factors, lesions with mixed vascularization (odds ratio [OR]: 2.038, P = 0.019), central stellate scarring (OR: 87.992, P = 0.007), extension toward the capsule (OR: 22.587, P = 0.010), and chronic lymphocytic thyroiditis (OR: 9.195, P = 0.006) were independently associated with FTC. Furthermore, combined with chronic lymphocytic thyroiditis, mixed vascularization, central stellate scarring, and extension toward the capsule showed high discriminatory accuracy in predicting FTC (AUC: 0.914; sensitivity: 96.5%; specificity: 71.8%; p < 0.001).
Conclusions: In combination with chronic lymphocytic thyroiditis, mixed vascularization, central stellate scarring, and extension toward the capsule have greater accuracy in differentiating FTCs from FTAs.
背景:滤泡性甲状腺癌(FTC)是甲状腺中第二常见的癌症,具有较强的血行转移倾向。然而,FTC与滤泡性甲状腺腺瘤(FTA)的术前鉴别方法尚未得到很好的确定。某些超声特征与甲状腺恶性肿瘤风险的增加有关,但主要与甲状腺乳头状癌有关,而与FTC无关:这项回顾性研究旨在评估FTC的超声特征以及超声特征在区分FTC和FTA方面的价值:本研究共纳入了96例经病理证实的FTC或FTA患者,这些患者在术前接受了甲状腺超声检查。结果:我们的数据显示,FTC和FTA的病理发生率均高于FTC和FTA:结果:我们的数据显示,FTC 组中结节内结节、边缘棘状/微囊状、混合血管化、蛋壳状钙化、中央星状瘢痕、向囊内延伸和慢性淋巴细胞性甲状腺炎的发病率明显较高(均为 p 结论:FTC 组中结节内结节、边缘棘状/微囊状、混合血管化、蛋壳状钙化、中央星状瘢痕、向囊内延伸和慢性淋巴细胞性甲状腺炎的发病率明显较高:与慢性淋巴细胞性甲状腺炎相结合,混合血管化、中央星状瘢痕和向囊内延伸在鉴别 FTC 和 FTA 方面具有更高的准确性。
{"title":"Diagnostic significance of ultrasound characteristics in discriminating follicular thyroid carcinoma from adenoma.","authors":"Ruifang Xu, Wanwan Wen, Yanning Zhang, Linxue Qian, Yujiang Liu","doi":"10.1186/s12880-024-01477-0","DOIUrl":"10.1186/s12880-024-01477-0","url":null,"abstract":"<p><strong>Background: </strong>Follicular thyroid carcinoma (FTC) is the second most common cancer of the thyroid gland and has a greater propensity for haematogenous metastasis. However, the preoperative differentiation of FTC from follicular thyroid adenoma (FTA) is not well established. Certain ultrasound characteristics are associated with an increased risk of thyroid malignancy, but mainly for papillary thyroid cancers and not for FTC.</p><p><strong>Objectives: </strong>This retrospective study aimed to evaluate the ultrasound characteristics of FTC and the value of ultrasound characteristics in differentiating FTC from FTA.</p><p><strong>Methods: </strong>A total of 96 patients with pathologically confirmed FTC or FTA who underwent preoperative thyroid ultrasound were included in this study. The ultrasound and pathological characteristics were evaluated.</p><p><strong>Results: </strong>Our data revealed that the incidences of lesions with tubercle-in-nodule, spiculated/microlobulated margins, mixed vascularization, egg-shell calcification, central stellate scarring, extension toward the capsule and chronic lymphocytic thyroiditis were significantly higher in the FTC group (all p < 0.05). After adjusting for confounding factors, lesions with mixed vascularization (odds ratio [OR]: 2.038, P = 0.019), central stellate scarring (OR: 87.992, P = 0.007), extension toward the capsule (OR: 22.587, P = 0.010), and chronic lymphocytic thyroiditis (OR: 9.195, P = 0.006) were independently associated with FTC. Furthermore, combined with chronic lymphocytic thyroiditis, mixed vascularization, central stellate scarring, and extension toward the capsule showed high discriminatory accuracy in predicting FTC (AUC: 0.914; sensitivity: 96.5%; specificity: 71.8%; p < 0.001).</p><p><strong>Conclusions: </strong>In combination with chronic lymphocytic thyroiditis, mixed vascularization, central stellate scarring, and extension toward the capsule have greater accuracy in differentiating FTCs from FTAs.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"299"},"PeriodicalIF":2.9,"publicationDate":"2024-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11536847/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142581842","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-05DOI: 10.1186/s12880-024-01443-w
Kapongo D Lumamba, Gordon Wells, Delon Naicker, Threnesan Naidoo, Adrie J C Steyn, Mandlenkosi Gwetu
<p><strong>Objective: </strong>To conduct a systematic review of the computer vision applications that detect, diagnose, or analyse tuberculosis (TB) pathology or bacilli using digitised human lung tissue images either through automatic or semi-automatic methods. We categorised the computer vision platform into four technologies: image processing, object/pattern recognition, computer graphics, and deep learning. In this paper, the focus is on image processing and deep learning (DL) applications for either 2D or 3D digitised human lung tissue images. This review is useful for establishing a common practice in TB analysis using human lung tissue as well as identifying opportunities for further research in this space. The review brings attention to the state-of-art techniques for detecting TB, with emphasis on the challenges and limitations of the current techniques. The ultimate goal is to promote the development of more efficient and accurate algorithms for the detection or analysis of TB, and raise awareness about the importance of early detection.</p><p><strong>Design: </strong>We searched five databases and Google Scholar for articles published between January 2017 and December 2022 that focus on Mycobacterium tuberculosis detection, or tuberculosis pathology using digitised human lung tissue images. Details regarding design, image processing and computer-aided techniques, deep learning models, and datasets were collected and summarised. Discussions, analysis, and comparisons of state-of-the-art methods are provided to help guide future research. Further, a brief update on the relevant techniques and their performance is provided.</p><p><strong>Results: </strong>Several studies have been conducted to develop automated and AI-assisted methods for diagnosing Mtb and TB pathology from digitised human lung tissue images. Some studies presented a completely automated method of diagnosis, while other studies developed AI-assisted diagnostic methods. Low-level focus areas included the development of a novel <math><mi>μ</mi></math> CT scanner for soft tissue image contract, and use of multiresolution computed tomography to analyse the 3D structure of the human lung. High-level focus areas included the investigation the effects of aging on the number and size of small airways in the lungs using CT and whole lung high-resolution <math><mi>μ</mi></math> CT, and the 3D microanatomy characterisation of human tuberculosis lung using <math><mi>μ</mi></math> CT in conjunction with histology and immunohistochemistry. Additionally, a novel method for acquiring high-resolution 3D images of human lung structure and topology is also presented.</p><p><strong>Conclusion: </strong>The literature indicates that post 1950s, TB was predominantly studied using animal models even though no animal model reflects the full spectrum of human pulmonary TB disease and does not reproducibly transmit Mtb infection to other animals (Hunter, 2011). This explains why there are very f
{"title":"Computer vision applications for the detection or analysis of tuberculosis using digitised human lung tissue images - a systematic review.","authors":"Kapongo D Lumamba, Gordon Wells, Delon Naicker, Threnesan Naidoo, Adrie J C Steyn, Mandlenkosi Gwetu","doi":"10.1186/s12880-024-01443-w","DOIUrl":"10.1186/s12880-024-01443-w","url":null,"abstract":"<p><strong>Objective: </strong>To conduct a systematic review of the computer vision applications that detect, diagnose, or analyse tuberculosis (TB) pathology or bacilli using digitised human lung tissue images either through automatic or semi-automatic methods. We categorised the computer vision platform into four technologies: image processing, object/pattern recognition, computer graphics, and deep learning. In this paper, the focus is on image processing and deep learning (DL) applications for either 2D or 3D digitised human lung tissue images. This review is useful for establishing a common practice in TB analysis using human lung tissue as well as identifying opportunities for further research in this space. The review brings attention to the state-of-art techniques for detecting TB, with emphasis on the challenges and limitations of the current techniques. The ultimate goal is to promote the development of more efficient and accurate algorithms for the detection or analysis of TB, and raise awareness about the importance of early detection.</p><p><strong>Design: </strong>We searched five databases and Google Scholar for articles published between January 2017 and December 2022 that focus on Mycobacterium tuberculosis detection, or tuberculosis pathology using digitised human lung tissue images. Details regarding design, image processing and computer-aided techniques, deep learning models, and datasets were collected and summarised. Discussions, analysis, and comparisons of state-of-the-art methods are provided to help guide future research. Further, a brief update on the relevant techniques and their performance is provided.</p><p><strong>Results: </strong>Several studies have been conducted to develop automated and AI-assisted methods for diagnosing Mtb and TB pathology from digitised human lung tissue images. Some studies presented a completely automated method of diagnosis, while other studies developed AI-assisted diagnostic methods. Low-level focus areas included the development of a novel <math><mi>μ</mi></math> CT scanner for soft tissue image contract, and use of multiresolution computed tomography to analyse the 3D structure of the human lung. High-level focus areas included the investigation the effects of aging on the number and size of small airways in the lungs using CT and whole lung high-resolution <math><mi>μ</mi></math> CT, and the 3D microanatomy characterisation of human tuberculosis lung using <math><mi>μ</mi></math> CT in conjunction with histology and immunohistochemistry. Additionally, a novel method for acquiring high-resolution 3D images of human lung structure and topology is also presented.</p><p><strong>Conclusion: </strong>The literature indicates that post 1950s, TB was predominantly studied using animal models even though no animal model reflects the full spectrum of human pulmonary TB disease and does not reproducibly transmit Mtb infection to other animals (Hunter, 2011). This explains why there are very f","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"298"},"PeriodicalIF":2.9,"publicationDate":"2024-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11536899/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142575443","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-05DOI: 10.1186/s12880-024-01475-2
Yinghao Sun, Wei Liu, Ye Ma, Hong Yang, Yue Li, Bei Tan, Ji Li, Jiaming Qian
Background: Decision-making in the management of Crohn's disease (CD)-related spontaneous intra-abdominal abscess (IAA) is challenging. This study aims to reveal predictive factors for percutaneous drainage and/or surgery in the treatment of CD-related spontaneous IAA through long-term follow-up.
Methods: Data were collected, including clinical manifestations, radiography and treatment strategies, in Chinese patients with CD-related IAA in a tertiary medical center. Univariate and Multivariate Cox analysis were conducted to identify predictors for invasive therapy.
Results: Altogether, 48 CD patients were identified as having IAA through enhanced CT scans. The median follow-up time was 45.0 (23.3, 58.0) months. 23 (47.9%) patients underwent conservative medical treatment, and 25 (52.1%) patients underwent percutaneous drainage and/or surgical intervention (invasive treatment group). The 1-, 2-, and 5-year overall survival rates without invasive treatment were 75.0%, 56.1%, and 46.1%, respectively. On univariate Cox analysis, the computerized tomography (CT) features including nonperienteric abscess (HR: 4.22, 95% CI: 1.81-9.86, p = 0.001), max abscess diameter (HR: 1.01, 95% CI: 1.00-1.02, p<0.001) and width of sinus (HR: 1.27, 95% CI: 1.10-1.46, p = 0.001) were significantly associated with invasive treatment. Nonperienteric abscess was significantly associated with invasive treatment on multivariate Cox analysis (HR: 3.11, 95% CI: 1.25-7.71, p = 0.015). A score model was built by width of sinus, location of abscess and max abscess diameter to predict invasive treatment. The AUC of ROC, sensitivity and specificity were 0.892, 80.0% and 90.9% respectively.
Conclusions: More than half of CD-related IAA patients needed invasive therapy within 5-year follow-up. The CT features including nonperienteric abscess, larger maximum abscess diameter and width of sinus suggested a more aggressive approach to invasive treatment.
背景:克罗恩病(CD)相关自发性腹腔内脓肿(IAA)的治疗决策具有挑战性。本研究旨在通过长期随访揭示经皮引流术和/或手术治疗克罗恩病相关自发性腹腔内脓肿的预测因素:方法:在一家三级医疗中心收集了中国 CD 相关 IAA 患者的数据,包括临床表现、影像学检查和治疗策略。结果:共发现 48 例 CD 相关 IAA 患者:结果:共有 48 名 CD 患者通过增强 CT 扫描被确定患有 IAA。中位随访时间为 45.0 (23.3, 58.0) 个月。23名患者(47.9%)接受了保守治疗,25名患者(52.1%)接受了经皮引流和/或手术治疗(侵入性治疗组)。未经侵入性治疗的1年、2年和5年总生存率分别为75.0%、56.1%和46.1%。在单变量 Cox 分析中,计算机断层扫描(CT)特征包括非全腹腔脓肿(HR:4.22,95% CI:1.81-9.86,p = 0.001)、最大脓肿直径(HR:1.01,95% CI:1.00-1.02,p 结论:超过半数的CD相关IAA患者在5年随访期内需要进行侵入性治疗。CT特征包括非腹腔脓肿、较大的最大脓肿直径和脓窦宽度,这表明需要采取更积极的侵入性治疗方法。
{"title":"Computerized tomography features acting as predictors for invasive therapy in the management of Crohn's disease-related spontaneous intra-abdominal abscess: experience from long-term follow-up.","authors":"Yinghao Sun, Wei Liu, Ye Ma, Hong Yang, Yue Li, Bei Tan, Ji Li, Jiaming Qian","doi":"10.1186/s12880-024-01475-2","DOIUrl":"10.1186/s12880-024-01475-2","url":null,"abstract":"<p><strong>Background: </strong>Decision-making in the management of Crohn's disease (CD)-related spontaneous intra-abdominal abscess (IAA) is challenging. This study aims to reveal predictive factors for percutaneous drainage and/or surgery in the treatment of CD-related spontaneous IAA through long-term follow-up.</p><p><strong>Methods: </strong>Data were collected, including clinical manifestations, radiography and treatment strategies, in Chinese patients with CD-related IAA in a tertiary medical center. Univariate and Multivariate Cox analysis were conducted to identify predictors for invasive therapy.</p><p><strong>Results: </strong>Altogether, 48 CD patients were identified as having IAA through enhanced CT scans. The median follow-up time was 45.0 (23.3, 58.0) months. 23 (47.9%) patients underwent conservative medical treatment, and 25 (52.1%) patients underwent percutaneous drainage and/or surgical intervention (invasive treatment group). The 1-, 2-, and 5-year overall survival rates without invasive treatment were 75.0%, 56.1%, and 46.1%, respectively. On univariate Cox analysis, the computerized tomography (CT) features including nonperienteric abscess (HR: 4.22, 95% CI: 1.81-9.86, p = 0.001), max abscess diameter (HR: 1.01, 95% CI: 1.00-1.02, p<0.001) and width of sinus (HR: 1.27, 95% CI: 1.10-1.46, p = 0.001) were significantly associated with invasive treatment. Nonperienteric abscess was significantly associated with invasive treatment on multivariate Cox analysis (HR: 3.11, 95% CI: 1.25-7.71, p = 0.015). A score model was built by width of sinus, location of abscess and max abscess diameter to predict invasive treatment. The AUC of ROC, sensitivity and specificity were 0.892, 80.0% and 90.9% respectively.</p><p><strong>Conclusions: </strong>More than half of CD-related IAA patients needed invasive therapy within 5-year follow-up. The CT features including nonperienteric abscess, larger maximum abscess diameter and width of sinus suggested a more aggressive approach to invasive treatment.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"300"},"PeriodicalIF":2.9,"publicationDate":"2024-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11536533/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142581833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-01DOI: 10.1186/s12880-024-01471-6
Anle Yu, Lanfang Su, Qun Li, Xiaohua Li, Sile Tao, Feng Li, Danqiong Deng
Background: Although there is a high incidence of hematogenous infections in melioidosis, a tropical infectious disease, there are few systematic analyses of hematogenous melioidosis in imaging articles. A comprehensive clinical and imaging evaluation of hematogenous melioidosis be conducted in order to achieve early diagnosis of the disease.
Materials and methods: We conducted an analysis of 111 cases of melioidosis diagnosed by bacteriological culture between August 2001 and September 2022. The analysis focused on observing the main manifestations of chest imaging and clinical data, including nodules, cavities, consolidation, ground glass opacity(GGO), pleural effusion, centrilobular nodules, and temperature, leucocyte count, diabetes, etc. Our study involved univariate and multivariate analyses to identify significant diagnostic variables and risk predictive factors.
Results: A total of 71.2% (79/111) of melioidosis cases were caused by hematogenous infection, and the most common organ involved was the lungs (88.5%, 100/113). The incidence of sepsis in patients with lung abnormalities was high (73%, 73/100), and the mortality rate of septic shock was 22% (22/100). Univariate analysis showed that the radiologic signs of blood culture-positive cases were more likely to have bilateral pulmonary and subpleural nodules (p = 0.003), bilateral GGO (p = 0.001), bilateral hydrothorax (p = 0.011). The multivariate analysis revealed a significant improvement in the area under the receiver operating characteristic curve (AUC) when comparing the model that included both clinical and radiologic variables to the model with clinical variables alone. The AUC increased from 0.818 to 0.932 (p = 0.012). The most important variables in the logistic regression with backward elimination were found to be nodule, GGO, and diabetes.
Conclusion: The combination of CT features and clinical variables provided a valuable and timely warning for blood borne infectious melioidosis.
{"title":"Imaging and clinical manifestations of hematogenous dissemination in melioidosis.","authors":"Anle Yu, Lanfang Su, Qun Li, Xiaohua Li, Sile Tao, Feng Li, Danqiong Deng","doi":"10.1186/s12880-024-01471-6","DOIUrl":"10.1186/s12880-024-01471-6","url":null,"abstract":"<p><strong>Background: </strong>Although there is a high incidence of hematogenous infections in melioidosis, a tropical infectious disease, there are few systematic analyses of hematogenous melioidosis in imaging articles. A comprehensive clinical and imaging evaluation of hematogenous melioidosis be conducted in order to achieve early diagnosis of the disease.</p><p><strong>Materials and methods: </strong>We conducted an analysis of 111 cases of melioidosis diagnosed by bacteriological culture between August 2001 and September 2022. The analysis focused on observing the main manifestations of chest imaging and clinical data, including nodules, cavities, consolidation, ground glass opacity(GGO), pleural effusion, centrilobular nodules, and temperature, leucocyte count, diabetes, etc. Our study involved univariate and multivariate analyses to identify significant diagnostic variables and risk predictive factors.</p><p><strong>Results: </strong>A total of 71.2% (79/111) of melioidosis cases were caused by hematogenous infection, and the most common organ involved was the lungs (88.5%, 100/113). The incidence of sepsis in patients with lung abnormalities was high (73%, 73/100), and the mortality rate of septic shock was 22% (22/100). Univariate analysis showed that the radiologic signs of blood culture-positive cases were more likely to have bilateral pulmonary and subpleural nodules (p = 0.003), bilateral GGO (p = 0.001), bilateral hydrothorax (p = 0.011). The multivariate analysis revealed a significant improvement in the area under the receiver operating characteristic curve (AUC) when comparing the model that included both clinical and radiologic variables to the model with clinical variables alone. The AUC increased from 0.818 to 0.932 (p = 0.012). The most important variables in the logistic regression with backward elimination were found to be nodule, GGO, and diabetes.</p><p><strong>Conclusion: </strong>The combination of CT features and clinical variables provided a valuable and timely warning for blood borne infectious melioidosis.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"296"},"PeriodicalIF":2.9,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11529265/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142563798","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-01DOI: 10.1186/s12880-024-01476-1
Sankar M, Baiju Bv, Preethi D, Ananda Kumar S, Sandeep Kumar Mathivanan, Mohd Asif Shah
Detecting brain tumors early on is critical for effective treatment and life-saving efforts. The analysis of the brain with MRI scans is fundamental to the diagnosis because it contains detailed structural views of the brain, which is vital in identifying any of its abnormalities. The other option of performing an invasive biopsy is very painful and uncomfortable, which is not the case with MRI as it is free from surgically invasive margins and pieces of equipment. This helps patients to feel more at ease and hasten the diagnostic procedure, allowing physicians to formulate and practice action plans quicker. It is very difficult to locate a human brain tumor by manual because MRI scans produce large numbers of three-dimensional images. Complete applicability of pre-written computerized diagnostics, affords high possibilities in providing areas of interest earlier through the application of machine learning techniques and algorithms. The proposed work in the present study was to develop a deep learning model which will classify brain tumor grade images (BTGC), and hence enhance accuracy in diagnosing patients with different grades of brain tumors using MRI. A MobileNetV2 model, was used to extract the features from the images. This model increases the efficiency and generalizability of the model further. In this study, six standard Kaggle brain tumor MRI datasets were used to train and validate the developed and tested model of a brain tumor detection and classification algorithm into several types. This work consists of two key components: (i) brain tumor detection and (ii) classification of the tumor. The tumor classifications are conducted in both three classes (Meningioma, Pituitary, and glioma) and two classes (malignant, benign). The model has been reported to detect brain tumors with 99.85% accuracy, to distinguish benign and malignant tumors with 99.87% accuracy, and to type meningioma, pituitary, and glioma tumors with 99.38% accuracy. The results of this study indicate that the described technique is useful in the detection and classification of brain tumors.
{"title":"Efficient brain tumor grade classification using ensemble deep learning models.","authors":"Sankar M, Baiju Bv, Preethi D, Ananda Kumar S, Sandeep Kumar Mathivanan, Mohd Asif Shah","doi":"10.1186/s12880-024-01476-1","DOIUrl":"10.1186/s12880-024-01476-1","url":null,"abstract":"<p><p>Detecting brain tumors early on is critical for effective treatment and life-saving efforts. The analysis of the brain with MRI scans is fundamental to the diagnosis because it contains detailed structural views of the brain, which is vital in identifying any of its abnormalities. The other option of performing an invasive biopsy is very painful and uncomfortable, which is not the case with MRI as it is free from surgically invasive margins and pieces of equipment. This helps patients to feel more at ease and hasten the diagnostic procedure, allowing physicians to formulate and practice action plans quicker. It is very difficult to locate a human brain tumor by manual because MRI scans produce large numbers of three-dimensional images. Complete applicability of pre-written computerized diagnostics, affords high possibilities in providing areas of interest earlier through the application of machine learning techniques and algorithms. The proposed work in the present study was to develop a deep learning model which will classify brain tumor grade images (BTGC), and hence enhance accuracy in diagnosing patients with different grades of brain tumors using MRI. A MobileNetV2 model, was used to extract the features from the images. This model increases the efficiency and generalizability of the model further. In this study, six standard Kaggle brain tumor MRI datasets were used to train and validate the developed and tested model of a brain tumor detection and classification algorithm into several types. This work consists of two key components: (i) brain tumor detection and (ii) classification of the tumor. The tumor classifications are conducted in both three classes (Meningioma, Pituitary, and glioma) and two classes (malignant, benign). The model has been reported to detect brain tumors with 99.85% accuracy, to distinguish benign and malignant tumors with 99.87% accuracy, and to type meningioma, pituitary, and glioma tumors with 99.38% accuracy. The results of this study indicate that the described technique is useful in the detection and classification of brain tumors.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"297"},"PeriodicalIF":2.9,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11529038/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142563795","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}