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Cryoprotective Effect of Pyrano-[2,3-C]-Pyrazoles on H2O2 Induced Damage in Tetrahymena thermophila 吡喃-[2,3-C]-吡唑类化合物对高温四膜虫H2O2损伤的低温保护作用
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-09-10 DOI: 10.33263/briac134.305
Antioxidants are developed to assist the immune system and overcome oxidative stress, break the auto-oxidative chain reaction, quench oxygen singlets (O2-), and inhibit peroxidase formation. The main objective of this study was to search for potent antioxidant supplements to protect our cells against diseases associated with oxidative stress. We chose four pyrano-[2,3-c]-pyrazole derivatives to test their antioxidant properties in vivo using "Tetrahymena spp" as a cellular model. Then, we measured the activity of some antioxidant and biochemical biomarkers such as CAT, SOD, GAPDH, SDH, Gr, and MDA. Also, the fragmentation of DNA has been investigated. The current study demonstrated that the three compounds (5a, b, and c) have potent antioxidant activity, characterized by increased activity of some antioxidant enzymes, inhibiting lipid peroxidation and DNA damage. These findings suggest for the first time that Pyrano-[2,3-c]-Pyrazoles is a promising source of synthetic antioxidants that could offer protection against H2O2-induced- stress and provide us with a new challenge to design a library of pharmaceutical compounds with high activity and low toxicity.
抗氧化剂被开发用于帮助免疫系统和克服氧化应激,打破自身氧化链式反应,猝灭氧单线态(O2-),并抑制过氧化物酶的形成。这项研究的主要目的是寻找有效的抗氧化剂补充剂,以保护我们的细胞免受与氧化应激相关的疾病的影响。我们选择了四种吡喃并[2,3-c]-吡唑衍生物,以“四膜虫spp”为细胞模型,在体内测试其抗氧化性能。然后,我们测量了一些抗氧化和生化生物标志物的活性,如CAT、SOD、GAPDH、SDH、Gr和MDA。此外,还对DNA的断裂进行了研究。目前的研究表明,这三种化合物(5a、b和c)具有强大的抗氧化活性,其特征是增加了一些抗氧化酶的活性,抑制了脂质过氧化和DNA损伤。这些发现首次表明,吡拉诺-[2,3-c]-吡唑是一种很有前途的合成抗氧化剂来源,可以提供对H2O2诱导的应激的保护,并为我们设计一个具有高活性和低毒性的药物化合物库提供了新的挑战。
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引用次数: 1
Review on Computer-Aided Drug Design (CADD) Technique in Drug Discovery Researches and Solvent-Free Synthesis of 3,4-Dihydropyrimidin-2-(1H)-Ones/Thiones Catalyzed by Camphor Sulfonic Acid 计算机辅助药物设计技术在药物发现研究和樟脑磺酸催化无溶剂合成3,4-二氢嘧啶-2-(1H)-酮/噻吩中的应用综述
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-09-10 DOI: 10.33263/briac134.303
Combined with various computational and theoretical approaches, computer-aided drug design (CADD) is one of the contemporary approaches to drug discovery. Furthermore, this study briefly assesses the literature on computer-assisted drug design (CADD) techniques used in drug discovery research. An environmentally friendly synthetic route was developed for the convenient Biginelli synthesis of 3,4-dihydropyridine-2-(1H)-ones/thiones when no solvents are involved in the reaction using aromatic derivatives, urea/thiourea, and ethyl/methyl acetoacetate as catalysts in combination with camphor sulfonic acid (CSA). All reactions proceeded rapidly, and good product yields were obtained. Green synthesis in this study has many advantages over conventional synthesis, including a clean and environmentally friendly synthesis, easy operation, the elimination of hazardous organic solvents, a purification step free of chromatography, and the use of a non-corrosive and non-volatile catalyst. Furthermore, the method can be applied to single-tank reactions in a solvent-free environment.
计算机辅助药物设计(computer-aided drug design, CADD)是多种计算方法和理论方法相结合的现代药物发现方法之一。此外,本研究简要评估了计算机辅助药物设计(CADD)技术在药物发现研究中的应用。以芳香衍生物、尿素/硫脲、乙基/乙酰乙酸甲酯为催化剂,与樟脑磺酸(CSA)结合,在无溶剂条件下,采用Biginelli法合成3,4-二氢吡啶-2-(1H)-酮/硫酮。所有反应进行迅速,产物收率高。与传统合成相比,本研究中的绿色合成具有许多优点,包括合成清洁环保、操作简单、消除了有害的有机溶剂、净化步骤不需要色谱、使用无腐蚀性和不挥发的催化剂等。此外,该方法可应用于无溶剂环境下的单罐反应。
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引用次数: 0
Analysis of Distance 2 Topological Models of Alkanes 烷烃的距离2拓扑模型分析
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-09-10 DOI: 10.33263/briac134.307
Topological Indices serve as mathematical models for the QSPR/QSAR study, which provides the optimum theoretical analysis for expensive practical drug discovery experiments. In this paper, some of the degree-based topological indices concerning the vertices at distance 2 are obtained for alkane groups. And then, some physiochemical properties of Alkanes are analyzed using linear and double regression models.
拓扑指数可作为QSPR/QSAR研究的数学模型,为昂贵的实际药物发现实验提供最佳的理论分析。本文给出了烷烃基团在距离为2的顶点上的一些基于度的拓扑指标。然后用线性和双回归模型对烷烃的一些理化性质进行了分析。
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引用次数: 0
Quantitative Structure-Property Relationship Analysis on Priority PAHs Using Certain Closed Neighbourhood Topological Indices 基于封闭邻域拓扑指标的优先多环芳烃定量构性关系分析
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-09-10 DOI: 10.33263/briac134.306
Molecular structures and their physicochemical properties are related harmoniously. Having the potential uses in our everyday life, graph theory has become one of the most iconic and discussed areas of applied mathematics. Chemical graph theory (CGT) is a branch of graph theory that incorporates chemical aspects. The topological index (TI) is a well-defined graph-theoretical tool that offers a mathematical relationship with molecular structures and also characterizes their topology. TI has real-time applications such as isomer discrimination, drug design, QSPR, and QSAR studies in various domains of chemistry, including nanotechnology and biochemistry. Herein, seven closed neighborhood TIs are investigated. Using QSPR regression analysis, the chemical signature of the indices in predicting the physicochemical properties of priority polycyclic aromatic hydrocarbons (PAHs) is explored. These Tis exhibited a strong correlation with certain properties of priority PAHs. Certain statistical aspects of these indices are discussed, and the significant results have also been represented graphically.
分子结构与其物理化学性质之间有着和谐的联系。图论在我们的日常生活中有着潜在的用途,它已经成为应用数学中最具标志性和最受讨论的领域之一。化学图论(CGT)是图论的一个分支,它包含了化学方面。拓扑指数(TI)是一种定义良好的图论工具,它提供了与分子结构的数学关系,并表征了它们的拓扑结构。TI在化学的各个领域(包括纳米技术和生物化学)具有实时应用,如异构体鉴别、药物设计、QSPR和QSAR研究。本文研究了七个闭邻域TI。利用QSPR回归分析,探讨了预测优先多环芳烃理化性质的指标的化学特征。这些Tis与优先PAHs的某些性质表现出强烈的相关性。讨论了这些指数的某些统计方面,并用图形表示了重要结果。
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引用次数: 0
Interactive Performance of Wheat Nitrogen Fertilization and Inoculation with Growth-Promoting Bacteria 小麦氮肥与促生长细菌接种的交互作用
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-09-10 DOI: 10.33263/briac134.304
The exploitation of plant growth-promoting rhizobacteria (PGPR) emerges as an important strategy for fixing atmospheric nitrogen (N) and making it available to plants. Correspondingly, the purpose of this study was to evaluate the inoculation with Azospirillum brasilense via foliar with distinct N doses (40, 20, and 0 kg/ha) for different wheat cultivars (Sossego, Toruk, and Quartzo). The experiment was conducted during the 2020 harvest at the State University of Rio Grande do Sul, Cachoeira do Sul, Brazil. A completely randomized design (CRD) in a 3x6 factorial scheme with four replications was applied. Yield components and grain yield were established. Furthermore, the physicochemical characterization of wheat siliqua biomass was executed based on subcritical water hydrolysis (SWH). Gluten and mass analysis was established. Appropriately, the grain yield was up to 3197.05 kg/ ha for the Sossego cultivar with the N dose of 40 kg/ ha. Up to 0.84 g reducing sugars/ 100 g wheat siliqua was obtained based on the SWH. Finally, this study promoted N management as a key factor in increasing grain yield. This scenario reports the importance of the association of PGPRs as a fundamental promoter of N for plants to express their maximum potential.
利用促进植物生长的根瘤菌(rhizobacteria, PGPR)是固定大气氮(N)并使其为植物所利用的重要策略。相应地,本研究的目的是评估不同氮素剂量(40、20和0 kg/ha)对不同小麦品种(Sossego、Toruk和Quartzo)的叶片接种巴西偶氮螺旋菌的效果。该实验于2020年收获期间在巴西南卡乔埃拉州的南巴西格兰德州州立大学进行。采用完全随机设计(CRD), 3x6阶乘方案,4个重复。建立了产量构成因素和籽粒产量。此外,基于亚临界水水解(SWH)对小麦硅质生物质进行了理化表征。建立面筋和质谱分析。施氮量为40 kg/ ha时,Sossego品种籽粒产量可达3197.05 kg/ ha。在SWH的基础上,每100 g小麦硅油可获得0.84 g还原糖。最后,本研究促进了氮素管理作为粮食增产的关键因素。这种情况报告了PGPRs作为植物表达其最大潜能的基本启动子的重要性。
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引用次数: 0
Molecular Docking, ADMET Prediction, and Quantum Computational on 2-Methoxy Benzoyl Hydrazone Compounds as Potential Antileishmanial Inhibitors 2-甲氧基苯甲酰腙化合物作为潜在抗癫痫抑制剂的分子对接、ADMET预测和量子计算
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-09-10 DOI: 10.33263/briac134.302
Leishmaniasis is a neglected disease that affects about one million people a year worldwide and is present in over 90 countries. This illness is a serious public health issue since it can result in mutilation, incapacity, and even death. The drugs currently used for treatment are highly toxic, ineffective, expensive, and may cause antiparasitic resistance. A series of twenty-five 2-methoxy benzoyl hydrazone derivatives have recently been identified as promising antileishmanial inhibitors and was addressed using a molecular docking approach. All docked compounds interacted well within the active pocket of the receptor. Compounds M12, M15, M16, and M20 show a good binding energy value of -9.40, -8.90, -9.00, and -9.20 Kcal/mol, respectively, compared to pentamidine (-8.20 Kcal/mol), used as reference drug. These molecules also present many types and numbers of interactions with the studied receptor. The studied molecules were evaluated for their pharmacokinetic properties using ADMET prediction. They showed good bioavailability, particularly the molecules M12, M15, and M16 which were found to be non-toxic. Quantum calculations using the DFT approach were performed on the four selected compounds to determine the most electrophilic and nucleophilic of them. These findings would be very helpful in the search for new antileishmanial inhibitors.
利什曼病是一种被忽视的疾病,每年影响全世界约100万人,存在于90多个国家。这种疾病是一个严重的公共卫生问题,因为它可导致致残、丧失工作能力,甚至死亡。目前用于治疗的药物是剧毒、无效、昂贵的,并可能引起抗寄生虫耐药性。一系列的25个2-甲氧基苯甲酰腙衍生物最近被确定为有前途的抗利什曼原虫抑制剂,并使用分子对接方法进行了研究。所有停靠的化合物在受体的活性口袋内相互作用良好。与参比药物喷他脒(-8.20 Kcal/mol)相比,化合物M12、M15、M16和M20的结合能分别为-9.40、-8.90、-9.00和-9.20 Kcal/mol。这些分子与所研究的受体也表现出多种类型和数量的相互作用。利用ADMET预测方法评估了所研究分子的药代动力学性质。它们表现出良好的生物利用度,特别是M12、M15和M16分子被发现是无毒的。使用DFT方法对选定的四种化合物进行量子计算,以确定其中最亲电和亲核的化合物。这些发现将对寻找新的抗利什曼病抑制剂非常有帮助。
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引用次数: 0
Investigation of the Antibiofilm Activity of Some Spices and Medicinal Plants Essential Oils 几种香料及药用植物精油抗菌活性的研究
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-09-08 DOI: 10.33263/briac134.301
Biofilms are the structure microbial that attach to different surfaces and enclave microorganisms in a matrix composed, protecting them from harsh conditions, including immune effectors and antibiotics. Therefore, this study aimed to assess the anti-biofilm activity of lavender, cloves, eucalyptus, rosemary, thyme, and oregano commercial essential oils, known for their biocidal properties against Gram-positive and Gram-negative ESKAPE isolates, exhibiting multiple drug resistance. The most efficient proved to be the oregano, thyme, and clove essential oils, which exhibited the lowest minimal biofilm eradication concentrations values against all bacterial species. Although lavender, eucalyptus, and rosemary had a weaker effect than the first three oils, they have also inhibited biofilm development at concentrations low enough to be considered effective. This experimental approach may open new perspectives for developing efficient strategies to combat the emergent threat of antibiotic resistance and to control the formation of microbial biofilms, being also a valuable source of bioactive compounds and new anti-biofilm drugs.
生物膜是附着在不同表面的微生物结构,并将微生物包裹在基质中,保护它们免受恶劣条件的影响,包括免疫效应物和抗生素。因此,本研究旨在评估薰衣草、丁香、桉树、迷迭香、百里香和牛至商业精油的抗生物膜活性,这些精油以其对革兰氏阳性和革兰氏阴性ESKAPE分离株的生物杀灭特性而闻名,并表现出多重耐药性。最有效的是牛至、百里香和丁香精油,它们对所有细菌的最小生物膜根除浓度值最低。虽然薰衣草、桉树和迷迭香的效果比前三种精油弱,但它们在浓度低到足以被认为有效的情况下也能抑制生物膜的发育。该实验方法可能为开发有效的策略来对抗抗生素耐药性的新威胁和控制微生物生物膜的形成开辟了新的视角,也是生物活性化合物和新的抗生物膜药物的宝贵来源。
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引用次数: 0
Synthesis, Characterization, and in Vitro Anticancer Evaluation of 2-Aryl-4-Arylsulfonyl-5-RS-1,3-Oxazoles 2-芳基-4-芳基磺酰基-5-RS-1,3-恶唑类化合物的合成、表征及体外抗癌活性评价
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-07-19 DOI: 10.33263/briac134.336
Volodymyr Zyabrev, B. Demydchuk, V. Zhirnov, V. Brovarets
A novel series of 4-arylsulfonyl-1,3-oxazoles have been synthesized and characterized by IR, 1H NMR, 13C NMR spectroscopy, elemental analysis, and chromato-mass-spectrometry. The anticancer activities of all the newly synthesized compounds were evaluated via a single high dose (10 µM) against 59 cancer cell lines (without Melanoma SK-MEL-5) by the National Cancer Institute according to its screening protocol. Among these compounds, 2-[4-(4-chlorophenyl)sulfonyl-2-phenyl-oxazol-5-yl]sulfanyl-N-(2,4-dimethoxyphenyl)acetamide exhibited the highest activity against lines SNB75 and SF-539 of the CNS Cancer subpanel present in Glioblastoma and Gliosarcoma, respectively, exerting a cytostatic effect. 2-[4-(4-Bromophenyl)sulfonyl-2-phenyl-oxazol-5-yl]sulfanylacetamide has the highest antiproliferative activity against the HOP-92 (carcinoma) of the Non-Small Cell Lung Cancer subpanel, while N-(4-ethoxyphenyl)-2-[2-phenyl-4-(p-tolylsulfonyl)oxazol-5-yl]sulfanyl-acetamide exhibits cytotoxic activity against NCI-H226 (pleural mesothelioma) the Lung subpanel. The COMPARE analysis showed that the average graphs of the tested compounds have a weak or slightly moderate positive correlation with compounds with a known mechanism of antitumor activity, suggesting its specificity. These compounds demonstrated the anticancer activity against different individual cancer cell lines. This makes it possible to consider it a leading compound for further in-depth studies and synthesis of new 4-arylsulfonyl-1,3-derivatives oxazole with antitumor activity.
合成了一系列新的4-芳基磺酰-1,3-恶唑,并通过IR、1H NMR、13C NMR、元素分析和色谱质谱分析对其进行了表征。所有新合成的化合物通过单次高剂量(10 μ M)对59种癌细胞系(不含黑色素瘤SK-MEL-5)的抗癌活性进行了评估,由美国国家癌症研究所根据其筛选方案进行。其中,2-[4-(4-氯苯基)磺酰基-2-苯基-恶唑基-5-基]磺胺基- n -(2,4-二甲氧基苯基)乙酰胺分别对胶质母细胞瘤和胶质肉瘤的中枢神经系统肿瘤亚组SNB75和SF-539表现出最高的活性,具有细胞抑制作用。2-[4-(4-溴苯基)磺酰基-2-苯基-恶唑-5-基]磺胺乙酰胺对非小细胞肺癌亚组的HOP-92(癌)具有最高的抗增殖活性,而N-(4-乙氧基苯基)-2-[2-苯基-4-(对甲基磺酰基)恶唑-5-基]磺胺乙酰胺对肺亚组的NCI-H226(胸膜间皮瘤)具有细胞毒活性。COMPARE分析显示,被测化合物的平均图与已知抗肿瘤活性机制的化合物呈弱或稍中度正相关,表明其特异性。这些化合物显示出对不同个体癌细胞系的抗癌活性。这使得它有可能成为进一步深入研究和合成具有抗肿瘤活性的新的4-芳基磺酰-1,3衍生物恶唑的先导化合物。
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引用次数: 0
Quantitative Proteomic Assessment of Key Proteins Regulated by Electrical Pulse-mediated Galloflavin Delivery in Triple-Negative Breast Cancer Cells 电脉冲介导的三阴性乳腺癌症细胞中核黄素转运调控关键蛋白的定量蛋白质组学评估
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-07-19 DOI: 10.33263/briac133.297
Triple-negative breast cancer (TNBC) is the most lethal subset of breast cancers, lacking targeted therapies. There is a critical need to identify alternative treatments for TNBC. Towards this, in this research, we investigated the anticancer effects of Galloflavin (GF), an LDHB inhibitor, in reducing the proliferation of MDA-MB-231, the human triple-negative breast cancer cells. To enhance the uptake of GF, we applied electrical pulses (EP) with GF and studied its protein profile characteristics and viability. We used GF at a concentration of 100μM with 800V/cm, 100μs, and eight electrical pulses to treat these cells. Label-free, high throughput, quantitative proteomics results indicated that 172 proteins were significantly downregulated, while 222 proteins were significantly upregulated. The upregulated proteins include Cytochrome C Oxidase Assembly Factor and Mitochondrial Ribosomal proteins. Key downregulated proteins include LDHB, and ENO1 in EP+GF treatments, compared to GF only, indicating the effect of EP+GF combination in reducing the proliferation of the TNBC cells. These results pave the path for additional therapy for TNBC and the various pathways the TNBC cells proceeded with Electrochemotherapy.
癌症三阴性(TNBC)是乳腺癌中最致命的亚群,缺乏靶向治疗。迫切需要确定TNBC的替代治疗方法。为此,在本研究中,我们研究了LDHB抑制剂加洛黄素(GF)在减少MDA-MB-231(人类癌症三阴性细胞)增殖方面的抗癌作用。为了增强GF的摄取,我们用GF施加电脉冲(EP),并研究其蛋白质谱特征和活力。我们使用浓度为100μM、800V/cm、100μs和8个电脉冲的GF来处理这些细胞。无标记、高通量、定量蛋白质组学结果表明,172种蛋白质显著下调,222种蛋白质显著上调。上调的蛋白质包括细胞色素C氧化酶组装因子和线粒体核糖体蛋白质。与仅GF相比,EP+GF处理中的关键下调蛋白包括LDHB和ENO1,这表明EP+GF组合在减少TNBC细胞增殖方面的作用。这些结果为TNBC的额外治疗以及TNBC细胞进行电化学治疗的各种途径铺平了道路。
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引用次数: 2
Synthesis, In silico Molecular Docking Studies and antimicrobial evaluation of Some New Anthracene Derivatives Tagged with Arylidene, Pyridine, Oxazole, and Chromene Moieties as Promising Inhibitors of Bacterial DNA gyrase 以芳基、吡啶、恶唑和铬基标记的新型蒽衍生物作为细菌DNA旋切酶抑制剂的合成、硅分子对接研究和抗菌评价
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-07-19 DOI: 10.33263/briac133.299
Here, A series of unprecedented derivatives of several heterocyclic compounds, including arylidene, pyridine, oxazole, and chromene, were designed with the anthracene moiety starting from 2-cyano-pyrroloanthracen acetamide (1). The chemical composition of all synthesized compounds was established by spectral analysis FT-IR, 1H-NMR, 13C-NMR, and Mass spectra. Also, the new compounds were docked to the active site of the DNA gyrase B chain enzyme, and the suitable binding interactions were displayed according to their bond lengths and conformational energies. The structure-activity relationship analysis showed that the antimicrobial activity could be modulated by the existence of anthracene moiety, electron-withdrawing groups, and amide linkage. In silico ADMET (absorption, metabolic, distribution, toxicity, and excretion) predictions for the compounds 1-7 were calculated to gain insight into their pharmacokinetics, safety, and drug-likeness profile. The antimicrobial investigations of all synthesized molecules were achieved against Gram-negative (Escherichia coli) and Gram-positive (Bacillus cereus) bacterial strains. Results indicated that the compounds exhibited promising activity against strains. Therefore, the newly hybrid anthracene molecules could serve as promising chemical scaffolds to develop upcoming drug candidates as antimicrobial agents.
本文设计了一系列前所未有的杂环化合物衍生物,包括芳基、吡啶、恶唑和色烯,其蒽部分从2-氰基-吡咯并蒽乙酰胺(1)开始。通过FT-IR、1H-NMR、13C-NMR和质谱分析确定了所有合成化合物的化学组成。此外,新化合物与DNA聚合酶B链酶的活性位点对接,并根据它们的键长和构象能显示出合适的结合相互作用。结构-活性关系分析表明,蒽部分、吸电子基团和酰胺键的存在可以调节抗菌活性。计算化合物1-7的计算机ADMET(吸收、代谢、分布、毒性和排泄)预测,以深入了解其药代动力学、安全性和药物相似性。对所有合成的分子对革兰氏阴性(大肠杆菌)和革兰氏阳性(蜡样芽孢杆菌)菌株进行了抗菌研究。结果表明,该化合物对菌株具有良好的抗菌活性。因此,新的杂化蒽分子可以作为一种很有前途的化学支架,开发即将出现的候选药物作为抗菌剂。
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引用次数: 0
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Biointerface Research in Applied Chemistry
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