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Malate inhibits light-induced stomatal opening through SLAC1- and G-proteins-mediated pathway in grapevine and Arabidopsis.
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-31 DOI: 10.1093/bbb/zbaf011
Zhongyi Yang, Ruhai Gong, Yoshiharu Mimata, Shaosong Ye, Wei Ji, Wenxiu Ye

A key tricarboxylic acid cycle metabolite, malate, accumulates in leaves during dehydration and induces stomatal closure by recruiting cytosolic Ca2+, activating a SLOW ANION CHANNEL-ASSOCIATED 1, and promoting reactive oxygen species. However, the effects of malate on stomatal opening and its underlying molecular mechanisms remain poorly understood. Our study revealed that, among TCA cycle metabolites, malate specifically inhibited light-induced stomatal opening in both grapevine and Arabidopsis. We demonstrated that SLAC1 was required for malate's inhibitory effects. The inhibition by malate was disrupted by Ca2+ signaling inhibitors. Additionally, malate signal was mediated by G-proteins, which regulate the production of second messengers. ROS production was abolished when G-proteins were inhibited. These findings show that malate efficiently maintains stomatal closure by not only inducing stomatal closure but also inhibiting stomatal opening. The inhibition of stomatal opening by malate is mediated through the activation of SLAC1 and the G-protein signaling cascade.

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引用次数: 0
Synthesis and characterization of thermally stable and water-soluble pantetheine trisulfide and its composites.
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-30 DOI: 10.1093/bbb/zbaf010
Shoichiro Tomonaga, Hiroaki Ishimaru, Shizuki Misada, Takahiro Isobe, Etsuo Ohshima, Shinji Kitagaki

We clarified for the first time the synthesis procedure and characterization of pantetheine trisulfide, a potential new drug. Pantetheine trisulfide is the first supersulfur compound with both thermal stability and water solubility. Its hygroscopicity and deliquescence promote the hydrolysis of trisulfide, but these limitations are overcome by powdered composites of pantetheine trisulfide with silica gel or lactose.

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引用次数: 0
Validation of Machine Learning-assisted Screening of PKC Ligands: PKC Binding Affinity and Activation.
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-25 DOI: 10.1093/bbb/zbaf008
Jumpei Maki, Asami Oshimura, Yudai Shiotani, Maki Yamanaka, Sogen Okuda, Ryo C Yanagita, Shigeru Kitani, Yasuhiro Igarashi, Yutaka Saito, Yasubumi Sakakibara, Chihiro Tsukano, Kazuhiro Irie

Protein kinase C (PKC) is a family of serine/threonine kinases, and PKC ligands have the potential to be therapeutic seeds for cancer, Alzheimer's disease, and human immunodeficiency virus infection. However, in addition to desired therapeutic effects, most PKC ligands also exhibit undesirable pro-inflammatory effects. The discovery of new scaffolds for PKC ligands is important for developing less inflammatory PKC ligands, such as bryostatins. We previously reported that machine learning combined with our knowledge of the pharmacophore yielded 15 PKC ligand candidates, but we did not evaluate their PKC binding affinities fully. In this paper, PKC binding affinities of four candidates were examined to assess their potential as PKC ligands and to validate machine learning-assisted screening. Although compound 3' did not bind to PKC C1 domains, 1a, 2', and 4a exhibited moderate PKC binding affinities, suggesting that machine learning-assisted screening is advantageous in identifying new PKC ligand scaffolds.

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引用次数: 0
Application of mass spectrometry data for health evaluation. 这篇评论是针对作者在2024年获得JSBBA青年科学家奖而写的。
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-24 DOI: 10.1093/bbb/zbae182
Haruya Takahashi

Proper diet is crucial for obesity prevention. Food health research primarily focuses on two aspects: the pathogenesis of lifestyle-related diseases caused by obesity and the identification of dietary components that can aid in the prevention and treatment of lifestyle-related diseases. Substantial knowledge has been accumulated regarding these aspects via health function evaluations based on biological experiments. However, the intricate causal relationships and specific biological metabolites or food compounds that affect health remain unclear. To address these issues, my recent studies have incorporated mass spectrometry data, particularly metabolomic data obtained via comprehensive component analysis, to enhance health function evaluation via biological experiments. These studies have revealed various biological and healthy compounds derived from different food materials for the management of obesity-induced metabolic disorders.

合理的饮食对预防肥胖至关重要。食品健康研究主要集中在两个方面:由肥胖引起的生活方式相关疾病的发病机制和确定有助于预防和治疗生活方式相关疾病的饮食成分。通过基于生物实验的健康功能评估,在这些方面积累了大量的知识。然而,影响健康的错综复杂的因果关系和特定的生物代谢物或食物化合物仍不清楚。为了解决这些问题,我最近的研究结合了质谱数据,特别是通过综合成分分析获得的代谢组学数据,通过生物实验加强健康功能评估。这些研究揭示了从不同食物材料中提取的各种生物和健康化合物可用于管理肥胖引起的代谢紊乱。
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引用次数: 0
d-limonene suppresses RANKL-induced osteoclast differentiation and promotes osteoblast activity in vitro. D-柠檬烯可抑制 RANKL 诱导的破骨细胞分化,并在体外促进成骨细胞的活性。
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-24 DOI: 10.1093/bbb/zbae164
Lynn McCallum, Simon W Fox

Treatments for osteoporosis are typically given postfracture. Therefore, identifying safe prophylactic interventions to reduce fracture risk would be beneficial. One approach is to utilize the bioactive properties of natural compounds to modify osteoclast and osteoblast activity. d-limonene a well-tolerated, anti-inflammatory monoterpene found in citrus fruits holds promise due to its suppressive effect on NFκB, a key regulator of bone cell activity. We found that limonene promoted osteoblast differentiation and bone nodule formation and inhibited RANKL-induced osteoclast formation and bone resorption in vitro. Limonene also reduced the proresorptive signal provided by osteoblast, augmenting markers of osteoblast differentiation (alkaline phosphatase, osterix, and osteocalcin) and significantly decreasing osteoclastogenic cytokine production (PTHrP, IL-1β, and TNF-α). Therefore, limonene supplementation represents a potential route in combination with current interventions to optimize bone cell activity to maintain or enhance bone mass.

骨质疏松症的治疗通常在骨折后进行。因此,确定安全的预防性干预措施以降低骨折风险将是有益的。一种方法是利用天然化合物的生物活性特性来改变破骨细胞和成骨细胞的活性。D-柠檬烯是柑橘类水果中一种耐受性良好的抗炎单萜,由于它对骨细胞活性的关键调节因子 NFκB 有抑制作用,因此很有前景。我们发现,柠檬烯能促进成骨细胞分化和骨结节形成,抑制 RANKL 诱导的破骨细胞形成和体外骨吸收。柠檬烯还能减少成骨细胞提供的促吸收信号,增强成骨细胞分化标志物(碱性磷酸酶、sterix 和骨钙素),并显著减少破骨细胞生成细胞因子(PTHrP、IL-1β 和 TNF-α)的产生。因此,补充柠檬烯是结合当前干预措施优化骨细胞活性以保持或提高骨量的一种潜在途径。
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引用次数: 0
Food components and abdominal aortic aneurysm. 食物成分与腹主动脉瘤。
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-24 DOI: 10.1093/bbb/zbae141
Tomoko Sumi, Hirona Kugo, Mayo Higashihara, Tatsuya Moriyama, Nobuhiro Zaima

Abdominal aortic aneurysm (AAA) is a disease in which the abdominal aorta expands irreversibly and ruptures. At present, no preventive methods are available for this disease. Among potential risk factors, certain foods are considered to play important roles in the development of AAA. Epidemiological studies suggest a close relationship between AAA and dietary habits. Experimental studies have clarified potential suppressive or progressive food components for AAA. In this review, a summary of studies related to nutritional science in the fields of AAA and/or aortic degeneration are provided.

腹主动脉瘤(AAA)是一种腹主动脉不可逆转地扩张并破裂的疾病。目前,还没有预防这种疾病的方法。在潜在的风险因素中,某些食物被认为在 AAA 的发病中起着重要作用。流行病学研究表明,AAA 与饮食习惯密切相关。实验研究阐明了潜在的抑制或促进 AAA 的食物成分。本综述概述了 AAA 和/或主动脉变性领域与营养科学有关的研究。
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引用次数: 0
Flavonoids in breast milk and their absorption, metabolism, and bioactivity in infants. 母乳中的黄酮类化合物及其在婴儿体内的吸收、代谢和生物活性。
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-24 DOI: 10.1093/bbb/zbae140
Akari Ishisaka, Nao Fujiwara, Rie Mukai, Miyu Nishikawa, Shinichi Ikushiro, Akira Murakami

Flavonoids are present in plant foods such as vegetables and fruits and exhibit various physiological effects, including antioxidant and anti-inflammatory properties. Ingested flavonoids are absorbed from the intestinal tract and circulated in the blood. Some studies have indicated the presence of flavonoids in breast milk. However, information on their metabolites and concentrations in breast milk and the subsequent transfer to and physiological functions in infants is limited. Therefore, this review presents a compilation of recent findings on the transfer of flavonoids to infants via breast milk and their bioactivities.

类黄酮存在于蔬菜和水果等植物性食物中,具有多种生理作用,包括抗氧化和抗炎特性。摄入的类黄酮可从肠道吸收并在血液中循环。一些研究表明,母乳中含有类黄酮。然而,有关它们在母乳中的代谢物和浓度以及随后转移到婴儿体内并在婴儿体内发挥生理功能的信息还很有限。因此,本综述汇编了有关类黄酮通过母乳转移到婴儿体内及其生物活性的最新研究结果。
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引用次数: 0
Effect of coenzyme Q deficiency on ethanol fermentation in sake yeast. 辅酶Q缺乏对清酒酵母乙醇发酵的影响。
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-24 DOI: 10.1093/bbb/zbae167
Ikuhisa Nishida, Shogo Nishihara, Tomohiro Kaino, Makoto Kawamukai, Dai Hirata

Coenzyme Q (CoQ), a component of the electron transport chain, participates in aerobic respiration to produce ATP. Little is known about the relationship between CoQ and ethanol fermentation. Herein, we revealed that the deficiency or the addition of CoQ in sake yeast led to an increase or a decrease, respectively, in ethanol production rate at the early stage of fermentation.

辅酶 Q(CoQ)是电子传递链的一个组成部分,参与有氧呼吸以产生 ATP。人们对 CoQ 与乙醇发酵之间的关系知之甚少。在本文中,我们发现在清酒酵母中缺乏或添加 CoQ 会分别导致发酵早期乙醇生产率的提高或降低。
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引用次数: 0
Bacillus velezensis S141 improves the root growth of soybean under drought conditions. 枯草芽孢杆菌 S141 可改善干旱条件下大豆根系的生长。
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-24 DOI: 10.1093/bbb/zbae168
Takahiko Kondo, Surachat Sibponkrung, Panlada Tittabutr, Nantakorn Boonkerd, Shu Ishikawa, Neung Teaumroong, Ken-Ichi Yoshida

Bacillus velezensis S141 helps soybean establish specific symbiosis with strains of Bradyrhizobium diazoefficiens to form larger nodules and improve nitrogen fixation efficiency. In this study, we found that the dry weight of soybean roots increased significantly in the presence of S141 alone under drought conditions. Hence, S141 improved the root growth of soybean under limited water supply conditions. S141 can produce some auxin, which might be involved in the improved nodulation. Inactivating IPyAD of S141, which is required for auxin biosynthesis, did not alter the beneficial effects of S141, suggesting that the root growth was independent of auxin produced by S141. Under drought conditions, soybean exhibited some responses to resist osmotic and oxidative stresses; however, S141 was relevant to none of these responses. Although the mechanism remains unclear, S141 might produce some substances that stimulate the root growth of soybean under drought conditions.

Bacillus velezensis S141 能帮助大豆与 Bradyrhizobium diazoefficiens 菌株建立特定的共生关系,形成更大的结节,提高固氮效率。本研究发现,在干旱条件下,大豆根的干重在单独使用 S141 的情况下显著增加。因此,S141 能改善大豆在有限供水条件下的根系生长。S141 能产生一些辅助素,这可能与提高大豆的结瘤率有关。灭活 S141 的 IPyAD(辅助素生物合成所必需)并没有改变 S141 的有益作用,这表明根系生长与 S141 产生的辅助素无关。在干旱条件下,大豆表现出一些抵抗渗透胁迫和氧化胁迫的反应;然而,S141 与这些反应都无关。虽然机制尚不清楚,但 S141 可能产生了一些物质,在干旱条件下刺激大豆根系的生长。
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引用次数: 0
Bile acids acting as a feeding signal and functional foods mimicking bile acid function. 作为进食信号的胆汁酸和模仿胆汁酸功能的功能性食品。
IF 1.4 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-24 DOI: 10.1093/bbb/zbae133
Ryuichiro Sato

To elucidate the function of the bile acid-binding receptor TGR5 in skeletal muscle, we developed transgenic mice expressing human TGR5 in the skeletal muscle tissue. A significant increase in muscle mass was observed in these transgenic mice, whereas a decrease in muscle mass was observed in the TGR5-deficient mice. Following treadmill exercise, TGR5 gene expression increased in response to ER stress induced in skeletal muscle via an ER stress response motif present in its promoter region. Exercise and rapid postprandial elevation in blood bile acid concentrations can be considered the primary stimuli for the TGR5-mediated increase in skeletal muscle mass. We developed a scoring system to identify food ingredients with TGR5 agonist activity, and identified the citrus limonoid nomilin. Similar effects were observed for other triterpenoids in addition to nomilin. Cell culture and in vivo experiments demonstrated that these food factors increase protein synthesis and muscle mass.

为了阐明胆汁酸结合受体 TGR5 在骨骼肌中的功能,我们培育了在骨骼肌组织中表达人 TGR5 的转基因小鼠。在这些转基因小鼠中观察到肌肉质量明显增加,而在 TGR5 缺失的小鼠中观察到肌肉质量下降。在进行跑步机运动后,TGR5基因的表达增加,这是对骨骼肌中通过其启动子区域中的ER应激反应基团诱导的ER应激反应的响应。运动和餐后血液中胆汁酸浓度的快速升高可被认为是TGR5介导的骨骼肌质量增加的主要刺激因素。我们开发了一套评分系统来识别具有 TGR5 激动剂活性的食物成分,并确定了柑橘类柠檬素诺米林。除诺米林外,其他三萜类化合物也有类似作用。细胞培养和体内实验证明,这些食物因子能增加蛋白质合成和肌肉质量。
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引用次数: 0
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