首页 > 最新文献

BMC Medical Informatics and Decision Making最新文献

英文 中文
Synthetic data generation methods for longitudinal and time series health data: a systematic review. 纵向和时间序列健康数据的合成数据生成方法:系统回顾。
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-24 DOI: 10.1186/s12911-025-03326-8
Marko Miletic, Murat Sariyar

Background: Synthetic data generation (SDG) has emerged as a critical enabler for data-driven healthcare research, offering privacy-preserving alternatives to real patient data. Temporal health data - ranging from physiological signals to electronic health records (EHRs) - pose unique challenges for SDG due to their complexity, irregularity, and clinical sensitivity.

Objective: This review systematically examines SDG methods for longitudinal and time-series health data. Its aims are to (1) propose a lightweight taxonomy to support orientation across the SDG landscape along five structural dimensions, (2) characterize the major synthesis techniques and their alignment with temporal structures and data modalities, and (3) synthesize the utility and privacy evaluation strategies used in practice.

Methods: A systematic literature review was conducted following PRISMA guidelines across four major databases (ACM, arXiv, IEEE Xplore, Europe PMC) for publications from 2017 to 2025. Eligible studies proposed or applied SDG techniques to healthcare-relevant temporal data with sufficient methodological transparency. Structured data extraction and thematic analysis were used to identify modeling trends, evaluation metrics, and domain-specific requirements, complemented by a comparative synthesis of SDG methods.

Results: A total of 115 studies were included. Deep generative models - especially Generative Adversarial Networks (GANs), Autoencoders (AEs), and diffusion-based methods - dominate the field, with increasing adoption of autoregressive and hybrid simulation approaches. Event-based EHR data are most commonly targeted, while continuous and irregular time series remain underexplored. Utility evaluations vary widely, with strong emphasis on descriptive statistics and predictive performance, but limited attention to inferential validity and clinical realism. Privacy assessments are sparse and inconsistently reported: only 30% of studies included any metric, and just around 6% implemented differential privacy (DP), often without parameter disclosure. This limited adoption may reflect technical challenges, limited expertise, and the absence of regulatory incentives.

Conclusions: Synthetic temporal data play an increasingly vital role across clinical prediction, public health modeling, and Artificial Intelligence (AI) development. However, SDG research remains fragmented in terminology, evaluation practices, and privacy safeguards. Responsible-AI considerations - such as fairness, transparency, and trust - along with evidence on clinical adoption remain underexplored but are critical for future integration. This review provides a unified conceptual and methodological framework to guide future research, standardization efforts, and interdisciplinary collaboration for responsible, effective use of synthetic health data.

背景:合成数据生成(SDG)已成为数据驱动的医疗保健研究的关键推动因素,为真实患者数据提供了保护隐私的替代方案。时间健康数据——从生理信号到电子健康记录(EHRs)——由于其复杂性、不规则性和临床敏感性,对可持续发展目标构成了独特的挑战。目的:本综述系统地考察了可持续发展目标方法在纵向和时间序列健康数据中的应用。其目的是:(1)提出一个轻量级的分类法,以支持可持续发展目标在五个结构维度上的定位;(2)描述主要的综合技术及其与时间结构和数据模式的一致性;(3)综合实践中使用的效用和隐私评估策略。方法:根据PRISMA指南对四个主要数据库(ACM、arXiv、IEEE explore、Europe PMC) 2017 - 2025年的出版物进行系统文献综述。符合条件的研究建议或将可持续发展目标技术应用于与卫生保健相关的时间数据,方法具有足够的透明度。结构化数据提取和专题分析用于确定建模趋势、评估指标和领域特定需求,并辅以可持续发展目标方法的比较综合。结果:共纳入115项研究。深度生成模型——尤其是生成对抗网络(gan)、自动编码器(AEs)和基于扩散的方法——主导着该领域,越来越多地采用自回归和混合模拟方法。基于事件的电子病历数据是最常见的目标,而连续和不规则时间序列仍未得到充分探索。效用评估差异很大,强调描述性统计和预测性能,但对推理有效性和临床现实性的关注有限。隐私评估很少,报告也不一致:只有30%的研究包括任何指标,只有大约6%的研究实施了差异隐私(DP),通常没有参数披露。这种有限的采用可能反映了技术挑战、有限的专业知识和缺乏监管激励。结论:合成时间数据在临床预测、公共卫生建模和人工智能(AI)发展中发挥着越来越重要的作用。然而,可持续发展目标研究在术语、评估实践和隐私保护方面仍然支离破碎。负责任的人工智能考虑因素——如公平、透明和信任——以及临床采用的证据仍未得到充分探索,但对未来的整合至关重要。本综述提供了一个统一的概念和方法框架,以指导未来的研究、标准化工作和跨学科合作,以负责任、有效地使用综合卫生数据。
{"title":"Synthetic data generation methods for longitudinal and time series health data: a systematic review.","authors":"Marko Miletic, Murat Sariyar","doi":"10.1186/s12911-025-03326-8","DOIUrl":"10.1186/s12911-025-03326-8","url":null,"abstract":"<p><strong>Background: </strong>Synthetic data generation (SDG) has emerged as a critical enabler for data-driven healthcare research, offering privacy-preserving alternatives to real patient data. Temporal health data - ranging from physiological signals to electronic health records (EHRs) - pose unique challenges for SDG due to their complexity, irregularity, and clinical sensitivity.</p><p><strong>Objective: </strong>This review systematically examines SDG methods for longitudinal and time-series health data. Its aims are to (1) propose a lightweight taxonomy to support orientation across the SDG landscape along five structural dimensions, (2) characterize the major synthesis techniques and their alignment with temporal structures and data modalities, and (3) synthesize the utility and privacy evaluation strategies used in practice.</p><p><strong>Methods: </strong>A systematic literature review was conducted following PRISMA guidelines across four major databases (ACM, arXiv, IEEE Xplore, Europe PMC) for publications from 2017 to 2025. Eligible studies proposed or applied SDG techniques to healthcare-relevant temporal data with sufficient methodological transparency. Structured data extraction and thematic analysis were used to identify modeling trends, evaluation metrics, and domain-specific requirements, complemented by a comparative synthesis of SDG methods.</p><p><strong>Results: </strong>A total of 115 studies were included. Deep generative models - especially Generative Adversarial Networks (GANs), Autoencoders (AEs), and diffusion-based methods - dominate the field, with increasing adoption of autoregressive and hybrid simulation approaches. Event-based EHR data are most commonly targeted, while continuous and irregular time series remain underexplored. Utility evaluations vary widely, with strong emphasis on descriptive statistics and predictive performance, but limited attention to inferential validity and clinical realism. Privacy assessments are sparse and inconsistently reported: only 30% of studies included any metric, and just around 6% implemented differential privacy (DP), often without parameter disclosure. This limited adoption may reflect technical challenges, limited expertise, and the absence of regulatory incentives.</p><p><strong>Conclusions: </strong>Synthetic temporal data play an increasingly vital role across clinical prediction, public health modeling, and Artificial Intelligence (AI) development. However, SDG research remains fragmented in terminology, evaluation practices, and privacy safeguards. Responsible-AI considerations - such as fairness, transparency, and trust - along with evidence on clinical adoption remain underexplored but are critical for future integration. This review provides a unified conceptual and methodological framework to guide future research, standardization efforts, and interdisciplinary collaboration for responsible, effective use of synthetic health data.</p>","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":" ","pages":"30"},"PeriodicalIF":3.8,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12849454/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145826919","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Application of artificial intelligence tools and clinical documentation burden: a systematic review and meta-analysis. 人工智能工具的应用和临床文献负担:系统回顾和荟萃分析。
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-24 DOI: 10.1186/s12911-025-03324-w
Jungang Zhao, Hanxiang Liu, Yaolong Chen, Fujian Song

Background: Clinician burnout is a growing global concern, with heavy clinical documentation workload identified as a major contributor. Clinical documentation tasks, though essential for patient care and communication, are time-consuming and cognitively demanding. Recent advances in artificial intelligence (AI), particularly natural language processing and large language models, are being explored as potential tools to alleviate documentation burden, yet their quantitative impact has not been systematically assessed.

Methods: We performed a systematic review and meta-analysis, registered on PROSPERO (CRD420250653291) and guided by PRISMA. Eligible studies included frontline health professionals using AI tools for clinical note creation, with comparators being usual practice or pre-implementation baseline. Primary outcomes were documentation burden, workload, burnout, and time spent on documentation. Searches were conducted in PubMed, Web of Science, Scopus, and key journals. Effect sizes were synthesized using standardized mean difference (SMD) under a random-effects model, with subgroup analyses by study design, AI tool type, task type, editing status, and data origin.

Results: Of the 23 studies included, 12 were non-randomised studies with a concurrent control and 11 employed a before-and-after comparison design. The study participants varied in specialties and were mainly from ambulatory settings, including physicians, surgeons, pediatricians, and ICU specialists. Heterogeneity in results across included studies was considerable, and the methodological quality of the available studies was generally low. Pooling results of the 14 studies yielded an overall standardized mean difference (SMD) of -0.71 (95% confidence interval [CI]: -0.93 to -0.49), indicating a moderate reduction in documentation workload and related burnout. Based on results of studies in which clinicians reviewed and edited AI-generated drafts, AI applications reduced documentation time, similarly representing a moderate effect size (SMD= -0.72, 95% CI -0.99 to -0.45). The quality of notes generated by AI tools was at least comparable to those prepared manually by clinicians.

Conclusions: AI technologies offer promising benefits for reducing clinical documentation burden. However, their implementation must be accompanied by rigorous quality control and ongoing evaluation in practical settings to optimize their effectiveness and safeguard patient care outcomes.

背景:临床医生职业倦怠是一个日益受到全球关注的问题,繁重的临床文件工作量被认为是一个主要因素。临床文件工作,虽然对病人的护理和沟通至关重要,是耗时和认知要求。人工智能(AI)的最新进展,特别是自然语言处理和大型语言模型,正在被探索作为减轻文档负担的潜在工具,但它们的定量影响尚未得到系统评估。方法:我们进行了一项系统评价和荟萃分析,注册在PROSPERO (CRD420250653291)上,并由PRISMA指导。符合条件的研究包括使用人工智能工具创建临床记录的一线卫生专业人员,比较指标为常规做法或实施前基线。主要结果是文档负担、工作量、倦怠和花费在文档上的时间。在PubMed, Web of Science, Scopus和关键期刊中进行了搜索。在随机效应模型下,采用标准化平均差(SMD)综合效应量,并根据研究设计、人工智能工具类型、任务类型、编辑状态和数据源进行亚组分析。结果:在纳入的23项研究中,12项为同时对照的非随机研究,11项采用前后比较设计。研究参与者的专业各不相同,主要来自门诊机构,包括内科医生、外科医生、儿科医生和ICU专家。纳入研究结果的异质性相当大,现有研究的方法学质量普遍较低。14项研究的汇总结果显示,总体标准化平均差(SMD)为-0.71(95%可信区间[CI]: -0.93至-0.49),表明文件工作量和相关倦怠适度减少。根据临床医生审查和编辑人工智能生成的草稿的研究结果,人工智能应用减少了记录时间,同样表示中等效应大小(SMD= -0.72, 95% CI -0.99至-0.45)。人工智能工具生成的笔记的质量至少与临床医生手工编写的笔记相当。结论:人工智能技术为减轻临床文件负担提供了有希望的好处。然而,它们的实施必须伴随着严格的质量控制和在实际环境中进行的持续评估,以优化其有效性并保障患者护理结果。
{"title":"Application of artificial intelligence tools and clinical documentation burden: a systematic review and meta-analysis.","authors":"Jungang Zhao, Hanxiang Liu, Yaolong Chen, Fujian Song","doi":"10.1186/s12911-025-03324-w","DOIUrl":"10.1186/s12911-025-03324-w","url":null,"abstract":"<p><strong>Background: </strong>Clinician burnout is a growing global concern, with heavy clinical documentation workload identified as a major contributor. Clinical documentation tasks, though essential for patient care and communication, are time-consuming and cognitively demanding. Recent advances in artificial intelligence (AI), particularly natural language processing and large language models, are being explored as potential tools to alleviate documentation burden, yet their quantitative impact has not been systematically assessed.</p><p><strong>Methods: </strong>We performed a systematic review and meta-analysis, registered on PROSPERO (CRD420250653291) and guided by PRISMA. Eligible studies included frontline health professionals using AI tools for clinical note creation, with comparators being usual practice or pre-implementation baseline. Primary outcomes were documentation burden, workload, burnout, and time spent on documentation. Searches were conducted in PubMed, Web of Science, Scopus, and key journals. Effect sizes were synthesized using standardized mean difference (SMD) under a random-effects model, with subgroup analyses by study design, AI tool type, task type, editing status, and data origin.</p><p><strong>Results: </strong>Of the 23 studies included, 12 were non-randomised studies with a concurrent control and 11 employed a before-and-after comparison design. The study participants varied in specialties and were mainly from ambulatory settings, including physicians, surgeons, pediatricians, and ICU specialists. Heterogeneity in results across included studies was considerable, and the methodological quality of the available studies was generally low. Pooling results of the 14 studies yielded an overall standardized mean difference (SMD) of -0.71 (95% confidence interval [CI]: -0.93 to -0.49), indicating a moderate reduction in documentation workload and related burnout. Based on results of studies in which clinicians reviewed and edited AI-generated drafts, AI applications reduced documentation time, similarly representing a moderate effect size (SMD= -0.72, 95% CI -0.99 to -0.45). The quality of notes generated by AI tools was at least comparable to those prepared manually by clinicians.</p><p><strong>Conclusions: </strong>AI technologies offer promising benefits for reducing clinical documentation burden. However, their implementation must be accompanied by rigorous quality control and ongoing evaluation in practical settings to optimize their effectiveness and safeguard patient care outcomes.</p>","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":" ","pages":"29"},"PeriodicalIF":3.8,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12836966/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145826900","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Does the integrated electronic medical record system have a positive adoption in community hospital settings? 综合电子病历系统在社区医院是否有积极的应用?
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-23 DOI: 10.1186/s12911-025-03283-2
Diwash Timilsina, Shiva Raj Acharya, Jeevan Bhatta, Mandeep Pathak
{"title":"Does the integrated electronic medical record system have a positive adoption in community hospital settings?","authors":"Diwash Timilsina, Shiva Raj Acharya, Jeevan Bhatta, Mandeep Pathak","doi":"10.1186/s12911-025-03283-2","DOIUrl":"10.1186/s12911-025-03283-2","url":null,"abstract":"","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":"25 1","pages":"444"},"PeriodicalIF":3.8,"publicationDate":"2025-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12729551/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145818028","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
REPLAY: a GPU-accelerated tool for temporal contact network epidemiology. 一个gpu加速的工具,用于时间接触网络流行病学。
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-22 DOI: 10.1186/s12911-025-03310-2
Harrison J Greenlee, Assefaw H Gebremedhin, Eric T Lofgren
{"title":"REPLAY: a GPU-accelerated tool for temporal contact network epidemiology.","authors":"Harrison J Greenlee, Assefaw H Gebremedhin, Eric T Lofgren","doi":"10.1186/s12911-025-03310-2","DOIUrl":"10.1186/s12911-025-03310-2","url":null,"abstract":"","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":" ","pages":"448"},"PeriodicalIF":3.8,"publicationDate":"2025-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12752409/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145809429","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhancing TSH-based congenital hypothyroidism screening using machine learning and resampling algorithms. 利用机器学习和重采样算法增强基于tsh的先天性甲状腺功能减退症筛查。
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-22 DOI: 10.1186/s12911-025-03312-0
Alexander De Furia, Paula Branco, Matthew Henderson

Purpose: Congenital hypothyroidism (CH) is a common cause of severe intellectual disability, affecting approximately 1 in 2,000 newborns globally. Treatable with early intervention, congenital hypothyroidism has long been a target of newborn screening programs. Current thyroid stimulating hormone (TSH) based programs suffer from low positive predictive value, resulting in unnecessary diagnostic investigations. Congenital hypothyroidism screening has proven challenging for machine learning previously due to massive class imbalance and having a single well known predictor, preventing acceptable screening sensitivity. This study represents the most comprehensive evaluation of machine learning for congenital hypothyroidism screening to date.

Methods: Analyzing data from 616,910 infants screened by Newborn Screening Ontario between 2019 and 2024. 12 classification and 12 resampling algorithms were trained using 4 different optimization metrics, for a total of 576 distinct models evaluated using stratified 5-fold cross-validation to ensure robustness. Models were optimized for sensitivity and then positive predictive value using various metrics. Model explainability was assessed using SHAP values and feature importances.

Results: We were able to create a model achieving 16.8% PPV while maintaining 100% sensitivity using a RUSBoost classifier and Gaussian Noise resampling. This represents a 60% improvement in positive predictive value over the current approach. TSH remained the dominant predictor as in current screening, but our model was able to include minor amounts of additional information from other features to improve performance.

Conclusion: These machine learning algorithms show no missed cases of CH and are able to significantly improve performance across robust testing. The findings suggest that machine learning offers a promising avenue for refining TSH-based CH screening processes, reducing false positives, and alleviating unnecessary stress and costs associated with current methods used by the majority of newborn screening programs globally.

目的:先天性甲状腺功能减退症(CH)是严重智力残疾的常见原因,影响全球约1 / 2000新生儿。通过早期干预治疗,先天性甲状腺功能减退症一直是新生儿筛查项目的目标。目前基于促甲状腺激素(TSH)的项目存在低阳性预测值,导致不必要的诊断调查。先天性甲状腺功能减退症的筛查对机器学习来说是一个挑战,因为它存在巨大的类别不平衡,而且只有一个已知的预测因子,这阻碍了可接受的筛查灵敏度。这项研究代表了迄今为止机器学习对先天性甲状腺功能减退筛查最全面的评估。方法:分析2019年至2024年安大略省新生儿筛查筛查的616,910名婴儿的数据。使用4种不同的优化指标训练了12种分类算法和12种重采样算法,总共使用分层5倍交叉验证评估了576种不同的模型,以确保稳健性。首先对模型进行敏感性优化,然后利用各种指标对模型进行正预测值优化。使用SHAP值和特征重要性评估模型的可解释性。结果:我们能够创建一个模型,实现16.8%的PPV,同时使用RUSBoost分类器和高斯噪声重采样保持100%的灵敏度。与目前的方法相比,这意味着正向预测值提高了60%。在目前的筛选中,TSH仍然是主要的预测因子,但我们的模型能够包括少量来自其他特征的额外信息,以提高性能。结论:这些机器学习算法没有遗漏CH病例,并且能够显着提高鲁棒性测试的性能。研究结果表明,机器学习为改进基于tsh的CH筛查过程、减少误报、减轻与全球大多数新生儿筛查项目当前使用的方法相关的不必要的压力和成本提供了一条有前途的途径。
{"title":"Enhancing TSH-based congenital hypothyroidism screening using machine learning and resampling algorithms.","authors":"Alexander De Furia, Paula Branco, Matthew Henderson","doi":"10.1186/s12911-025-03312-0","DOIUrl":"10.1186/s12911-025-03312-0","url":null,"abstract":"<p><strong>Purpose: </strong>Congenital hypothyroidism (CH) is a common cause of severe intellectual disability, affecting approximately 1 in 2,000 newborns globally. Treatable with early intervention, congenital hypothyroidism has long been a target of newborn screening programs. Current thyroid stimulating hormone (TSH) based programs suffer from low positive predictive value, resulting in unnecessary diagnostic investigations. Congenital hypothyroidism screening has proven challenging for machine learning previously due to massive class imbalance and having a single well known predictor, preventing acceptable screening sensitivity. This study represents the most comprehensive evaluation of machine learning for congenital hypothyroidism screening to date.</p><p><strong>Methods: </strong>Analyzing data from 616,910 infants screened by Newborn Screening Ontario between 2019 and 2024. 12 classification and 12 resampling algorithms were trained using 4 different optimization metrics, for a total of 576 distinct models evaluated using stratified 5-fold cross-validation to ensure robustness. Models were optimized for sensitivity and then positive predictive value using various metrics. Model explainability was assessed using SHAP values and feature importances.</p><p><strong>Results: </strong>We were able to create a model achieving 16.8% PPV while maintaining 100% sensitivity using a RUSBoost classifier and Gaussian Noise resampling. This represents a 60% improvement in positive predictive value over the current approach. TSH remained the dominant predictor as in current screening, but our model was able to include minor amounts of additional information from other features to improve performance.</p><p><strong>Conclusion: </strong>These machine learning algorithms show no missed cases of CH and are able to significantly improve performance across robust testing. The findings suggest that machine learning offers a promising avenue for refining TSH-based CH screening processes, reducing false positives, and alleviating unnecessary stress and costs associated with current methods used by the majority of newborn screening programs globally.</p>","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":" ","pages":"449"},"PeriodicalIF":3.8,"publicationDate":"2025-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12751215/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145809446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Leveraging laboratory biomarkers to predict urosepsis after upper urinary tract stone surgery: an explainable machine learning approach. 利用实验室生物标志物预测上尿路结石手术后尿脓毒症:一种可解释的机器学习方法。
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-20 DOI: 10.1186/s12911-025-03314-y
Zuheng Wang, Xiao Li, Qin Li, Rongbin Zhou, Dongwei Pan, Zequn Su, Cunmeng Wei, Wenhao Lu, Fubo Wang
{"title":"Leveraging laboratory biomarkers to predict urosepsis after upper urinary tract stone surgery: an explainable machine learning approach.","authors":"Zuheng Wang, Xiao Li, Qin Li, Rongbin Zhou, Dongwei Pan, Zequn Su, Cunmeng Wei, Wenhao Lu, Fubo Wang","doi":"10.1186/s12911-025-03314-y","DOIUrl":"10.1186/s12911-025-03314-y","url":null,"abstract":"","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":" ","pages":"27"},"PeriodicalIF":3.8,"publicationDate":"2025-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145800455","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Modeling anesthetic-drug label detection for low-resource operating rooms. 低资源手术室麻醉药品标签检测建模。
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-20 DOI: 10.1186/s12911-025-03316-w
Solomon Nsumba, Flavia Delmira Ninsiima, Mary Juliet Nampawu, Peter Nabende, Joyce Nakatumba-Nabende
{"title":"Modeling anesthetic-drug label detection for low-resource operating rooms.","authors":"Solomon Nsumba, Flavia Delmira Ninsiima, Mary Juliet Nampawu, Peter Nabende, Joyce Nakatumba-Nabende","doi":"10.1186/s12911-025-03316-w","DOIUrl":"10.1186/s12911-025-03316-w","url":null,"abstract":"","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":" ","pages":"28"},"PeriodicalIF":3.8,"publicationDate":"2025-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145800481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ProAE: an R package for graphical tools and standardized analysis of patient-reported outcomes and adverse events data. ProAE:一个R软件包,用于对患者报告的结果和不良事件数据进行图形工具和标准化分析。
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-20 DOI: 10.1186/s12911-025-03320-0
Blake Langlais, Brie Noble, Briant Fruth, Mia Truman, Gina L Mazza, Brenda Ginos, Carolyn Mead-Harvey, Minji Lee, Claire Yee, Lauren Rogak, Eric Meek, Allison M Deal, John Devin Peipert, Gita Thanarajasingam, Ethan Basch, Amylou C Dueck

Background: Patient-reported symptomatic adverse events (AE) are increasingly collected in oncology clinical trials to characterize treatment tolerability and inform clinical decision making using the Patient-Reported Outcomes (PRO) version of the Common Terminology Criteria for Adverse Events (PRO-CTCAE®). Although there are numerous analysis methods and graphical approaches used for PRO-CTCAE data, the current PRO literature is limited in unified reporting and graphical approaches as well as public-facing analysis tools.

Results: Collaborative efforts from the Standardization Working Group of the National Cancer Institute Cancer Treatment Tolerability Consortium worked to develop the R package, ProAE. Testing and validation of widely used methods were implemented in the R package and deployed to various open-source outlets including the Comprehensive R Archive Network (CRAN).

Conclusion: ProAE is a free and publicly available collection of standardized statistical analysis tools for PRO-CTCAE and other PRO data used in patient care and research. The ProAE package provides oncology researchers with an efficient and modern means to apply the published analysis approaches, including hypothesis testing, descriptive and inferential tables, and longitudinal graphics, without the need for costly software or licensing.

背景:肿瘤临床试验越来越多地收集患者报告的症状性不良事件(AE),以表征治疗耐受性,并使用不良事件通用术语标准(PRO- ctcae®)的患者报告结局(PRO)版本为临床决策提供信息。尽管有许多分析方法和图形方法用于PRO- ctcae数据,但目前的PRO文献在统一报告和图形方法以及面向公众的分析工具方面受到限制。结果:在国家癌症研究所癌症治疗耐受性联盟标准化工作组的共同努力下,开发了R包ProAE。广泛使用的方法的测试和验证在R包中实现,并部署到各种开源出口,包括综合R存档网络(CRAN)。结论:ProAE是一个免费且公开的PRO- ctcae和其他PRO数据用于患者护理和研究的标准化统计分析工具。ProAE软件包为肿瘤学研究人员提供了一种高效和现代的方法来应用已发表的分析方法,包括假设检验、描述性和推断表以及纵向图形,而不需要昂贵的软件或许可。
{"title":"ProAE: an R package for graphical tools and standardized analysis of patient-reported outcomes and adverse events data.","authors":"Blake Langlais, Brie Noble, Briant Fruth, Mia Truman, Gina L Mazza, Brenda Ginos, Carolyn Mead-Harvey, Minji Lee, Claire Yee, Lauren Rogak, Eric Meek, Allison M Deal, John Devin Peipert, Gita Thanarajasingam, Ethan Basch, Amylou C Dueck","doi":"10.1186/s12911-025-03320-0","DOIUrl":"10.1186/s12911-025-03320-0","url":null,"abstract":"<p><strong>Background: </strong>Patient-reported symptomatic adverse events (AE) are increasingly collected in oncology clinical trials to characterize treatment tolerability and inform clinical decision making using the Patient-Reported Outcomes (PRO) version of the Common Terminology Criteria for Adverse Events (PRO-CTCAE®). Although there are numerous analysis methods and graphical approaches used for PRO-CTCAE data, the current PRO literature is limited in unified reporting and graphical approaches as well as public-facing analysis tools.</p><p><strong>Results: </strong>Collaborative efforts from the Standardization Working Group of the National Cancer Institute Cancer Treatment Tolerability Consortium worked to develop the R package, ProAE. Testing and validation of widely used methods were implemented in the R package and deployed to various open-source outlets including the Comprehensive R Archive Network (CRAN).</p><p><strong>Conclusion: </strong>ProAE is a free and publicly available collection of standardized statistical analysis tools for PRO-CTCAE and other PRO data used in patient care and research. The ProAE package provides oncology researchers with an efficient and modern means to apply the published analysis approaches, including hypothesis testing, descriptive and inferential tables, and longitudinal graphics, without the need for costly software or licensing.</p>","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":" ","pages":"26"},"PeriodicalIF":3.8,"publicationDate":"2025-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12831245/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145800435","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A study on predicted in-hospital mortality in critically ill patients with coronary heart disease: analysis of the MIMIC-IV database. 冠心病危重患者住院死亡率预测研究:MIMIC-IV数据库分析
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-18 DOI: 10.1186/s12911-025-03319-7
Yijing Tao, Guoxin Huang, Mengna Huang, Qianwen Yao, Zhisong Wang, Leng Han, Donglai Cao, Guoxiu Ke, Yiwen Zheng, Juan Wang
{"title":"A study on predicted in-hospital mortality in critically ill patients with coronary heart disease: analysis of the MIMIC-IV database.","authors":"Yijing Tao, Guoxin Huang, Mengna Huang, Qianwen Yao, Zhisong Wang, Leng Han, Donglai Cao, Guoxiu Ke, Yiwen Zheng, Juan Wang","doi":"10.1186/s12911-025-03319-7","DOIUrl":"10.1186/s12911-025-03319-7","url":null,"abstract":"","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":" ","pages":"21"},"PeriodicalIF":3.8,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12822355/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145780372","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Explainable AI models for identifying anxiety and distress in cardiac patients with ICDs. 可解释的AI模型用于识别患有icd的心脏病患者的焦虑和痛苦。
IF 3.8 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2025-12-18 DOI: 10.1186/s12911-025-03315-x
Ali Ebrahimi, Jakob Bo Reinevald Eriksen, David Krogh Kølbæk, Jonas Mohr Pedersen, Ebbe Vincent Just Christensen, Søren Skovbakke, Ole Skov, Susanne Schmidt Pedersen, Amir Sorayaie Azar, Uffe Kock Wiil
{"title":"Explainable AI models for identifying anxiety and distress in cardiac patients with ICDs.","authors":"Ali Ebrahimi, Jakob Bo Reinevald Eriksen, David Krogh Kølbæk, Jonas Mohr Pedersen, Ebbe Vincent Just Christensen, Søren Skovbakke, Ole Skov, Susanne Schmidt Pedersen, Amir Sorayaie Azar, Uffe Kock Wiil","doi":"10.1186/s12911-025-03315-x","DOIUrl":"10.1186/s12911-025-03315-x","url":null,"abstract":"","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":" ","pages":"23"},"PeriodicalIF":3.8,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12829265/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145780392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
BMC Medical Informatics and Decision Making
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1