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ImAge quantitates aging and rejuvenation ImAge 对衰老和年轻化进行量化。
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-29 DOI: 10.1038/s43587-024-00685-1
Martin Alvarez-Kuglen, Kenta Ninomiya, Haodong Qin, Delany Rodriguez, Lorenzo Fiengo, Chen Farhy, Wei-Mien Hsu, Brian Kirk, Aaron Havas, Gen-Sheng Feng, Amanda J. Roberts, Rozalyn M. Anderson, Manuel Serrano, Peter D. Adams, Tatyana O. Sharpee, Alexey V. Terskikh
For efficient, cost-effective and personalized healthcare, biomarkers that capture aspects of functional, biological aging, thus predicting disease risk and lifespan more accurately and reliably than chronological age, are essential. We developed an imaging-based chromatin and epigenetic age (ImAge) that captures intrinsic age-related trajectories of the spatial organization of chromatin and epigenetic marks in single nuclei, in mice. We show that such trajectories readily emerge as principal changes in each individual dataset without regression on chronological age, and that ImAge can be computed using several epigenetic marks and DNA labeling. We find that interventions known to affect biological aging induce corresponding effects on ImAge, including increased ImAge upon chemotherapy treatment and decreased ImAge upon caloric restriction and partial reprogramming by transient OSKM expression in liver and skeletal muscle. Further, ImAge readouts from chronologically identical mice inversely correlated with their locomotor activity, suggesting that ImAge may capture elements of biological and functional age. In sum, we developed ImAge, an imaging-based biomarker of aging with single-cell resolution rooted in the analysis of spatial organization of epigenetic marks. Alvarez-Kuglen, Ninomiya, Qin, Rodriguez et al. demonstrate that the spatial organization of chromatin and epigenetic marks in individual nuclei follows age-related trajectories that can be captured by an imaging-based biomarker of aging (ImAge).
为了实现高效、经济和个性化的医疗保健,必须有生物标志物来捕捉功能性生物衰老的各个方面,从而比计时年龄更准确可靠地预测疾病风险和寿命。我们开发了一种基于成像的染色质和表观遗传年龄(ImAge),它能捕捉小鼠单个细胞核中染色质和表观遗传标记的空间组织与年龄相关的内在轨迹。我们的研究表明,这种轨迹很容易在每个数据集中显示为主要变化,而不需要对年代年龄进行回归,而且可以使用几种表观遗传标记和 DNA 标记来计算 ImAge。我们发现,已知会影响生物衰老的干预措施会对 ImAge 产生相应的影响,包括化疗后 ImAge 增加、热量限制后 ImAge 减少,以及在肝脏和骨骼肌中通过瞬时 OSKM 表达进行部分重编程。此外,时间相同的小鼠的 ImAge 读数与它们的运动活动成反比,这表明 ImAge 可能捕捉到生物和功能年龄的要素。总之,我们开发了 ImAge,这是一种基于成像的衰老生物标记,具有单细胞分辨率,根植于表观遗传标记的空间组织分析。
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引用次数: 0
Author Correction: Rare genetic coding variants associated with human longevity and protection against age-related diseases 作者更正:与人类长寿和预防老年相关疾病有关的罕见基因编码变异。
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-28 DOI: 10.1038/s43587-024-00708-x
Jhih-Rong Lin, Patrick Sin-Chan, Valerio Napolioni, Guillermo G. Torres, Joydeep Mitra, Quanwei Zhang, M. Reza Jabalameli, Zhen Wang, Nha Nguyen, Tina Gao, Regeneron Genetics Center, Matthias Laudes, Siegfried Görg, Andre Franke, Almut Nebel, Michael D. Greicius, Gil Atzmon, Kenny Ye, Vera Gorbunova, Warren C. Ladiges, Alan R. Shuldiner, Laura J. Niedernhofer, Paul D. Robbins, Sofiya Milman, Yousin Suh, Jan Vijg, Nir Barzilai, Zhengdong D. Zhang
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引用次数: 0
The promise of machine learning approaches to capture cellular senescence heterogeneity 机器学习方法捕捉细胞衰老异质性的前景。
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-26 DOI: 10.1038/s43587-024-00703-2
Imanol Duran, Cleo L. Bishop, Jesús Gil, Ryan Wallis
The identification of senescent cells is a long-standing unresolved challenge, owing to their intrinsic heterogeneity and the lack of universal markers. In this Comment, we discuss the recent advent of machine-learning-based approaches to identifying senescent cells by using unbiased, multiparameter morphological assessments, and how these tools can assist future senescence research.
由于衰老细胞固有的异质性和缺乏通用标记,识别衰老细胞是一项长期悬而未决的挑战。在这篇评论中,我们将讨论最近出现的基于机器学习的方法,通过使用无偏见的多参数形态学评估来识别衰老细胞,以及这些工具如何帮助未来的衰老研究。
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引用次数: 0
Serum proteomics reveal APOE-ε4-dependent and APOE-ε4-independent protein signatures in Alzheimer's disease. 血清蛋白质组学揭示了阿尔茨海默病中依赖 APOE-ε4 和不依赖 APOE-ε4 的蛋白质特征。
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-21 DOI: 10.1038/s43587-024-00693-1
Elisabet A Frick, Valur Emilsson, Thorarinn Jonmundsson, Anna E Steindorsdottir, Erik C B Johnson, Raquel Puerta, Eric B Dammer, Anantharaman Shantaraman, Amanda Cano, Mercè Boada, Sergi Valero, Pablo García-González, Elias F Gudmundsson, Alexander Gudjonsson, Rebecca Pitts, Xiazi Qiu, Nancy Finkel, Joseph J Loureiro, Anthony P Orth, Nicholas T Seyfried, Allan I Levey, Agustin Ruiz, Thor Aspelund, Lori L Jennings, Lenore J Launer, Valborg Gudmundsdottir, Vilmundur Gudnason

A deeper understanding of the molecular processes underlying late-onset Alzheimer's disease (LOAD) could aid in biomarker and drug target discovery. Using high-throughput serum proteomics in the prospective population-based Age, Gene/Environment Susceptibility-Reykjavik Study (AGES) cohort of 5,127 older Icelandic adults (mean age, 76.6 ± 5.6 years), we identified 303 proteins associated with incident LOAD over a median follow-up of 12.8 years. Over 40% of these proteins were associated with LOAD independently of APOE-ε4 carrier status, were implicated in neuronal processes and overlapped with LOAD protein signatures in brain and cerebrospinal fluid. We identified 17 proteins whose associations with LOAD were strongly dependent on APOE-ε4 carrier status, with mostly consistent associations in cerebrospinal fluid. Remarkably, four of these proteins (TBCA, ARL2, S100A13 and IRF6) were downregulated by APOE-ε4 yet upregulated due to LOAD, a finding replicated in external cohorts and possibly reflecting a response to disease onset. These findings highlight dysregulated pathways at the preclinical stages of LOAD, including those both independent of and dependent on APOE-ε4 status.

深入了解晚发性阿尔茨海默病(LOAD)的分子过程有助于生物标记物和药物靶点的发现。我们对 5127 名冰岛老年人(平均年龄为 76.6 ± 5.6 岁)进行了前瞻性人群年龄、基因/环境易感性-雷克雅未克研究(AGES)队列,利用高通量血清蛋白质组学研究,在 12.8 年的中位随访中发现了 303 种与 LOAD 发病相关的蛋白质。其中40%以上的蛋白质与LOAD相关,与APOE-ε4携带者身份无关,与神经元过程有关,并与大脑和脑脊液中的LOAD蛋白质特征重叠。我们发现了17种蛋白质,它们与LOAD的关联与APOE-ε4携带者状态密切相关,与脑脊液中的关联大多一致。值得注意的是,其中四个蛋白(TBCA、ARL2、S100A13 和 IRF6)受 APOE-ε4 影响而下调,但因 LOAD 而上调,这一发现在外部队列中得到了复制,可能反映了对疾病发病的反应。这些发现突显了LOAD临床前阶段的失调通路,包括那些独立于APOE-ε4状态和依赖于APOE-ε4状态的通路。
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引用次数: 0
Accelerometer-derived 'weekend warrior' physical activity pattern and brain health. 加速度计衍生的 "周末战士 "体育活动模式与大脑健康。
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-21 DOI: 10.1038/s43587-024-00688-y
Jiahao Min, Zhi Cao, Tingshan Duan, Yaogang Wang, Chenjie Xu

Extensive evidence shows the beneficial effect of adhering to a regular physical activity (PA) pattern on brain health. However, whether the 'weekend warrior' pattern, characterized by concentrated moderate-to-vigorous PA (MVPA) over 1-2 days, is associated with brain health is unclear. Here, we perform a prospective cohort study including 75,629 participants from the UK Biobank with validated accelerometry data. Individuals were classified into three PA patterns using current guideline thresholds: inactive (<150 min week-1 of MVPA), weekend warrior (≥150 min week-1 with ≥50% of total MVPA occurring within 1-2 days) and regularly active (≥150 min week-1 but not meeting weekend warrior criteria). We find that the weekend warrior pattern is associated with similarly lower risks of dementia, stroke, Parkinson's disease, depressive disorders and anxiety compared to a regularly active pattern. Our findings highlight the weekend warrior pattern as a potential alternative in preventive intervention strategies, particularly for those unable to maintain daily activity routines.

大量证据表明,坚持有规律的体育锻炼(PA)模式对大脑健康有益。然而,"周末战士 "模式的特点是在 1-2 天内集中进行中等强度的体育锻炼(MVPA),这种模式是否与大脑健康有关尚不清楚。在此,我们进行了一项前瞻性队列研究,研究对象包括英国生物库中 75629 名拥有有效加速度测量数据的参与者。根据目前的指南阈值,我们将参与者分为三种运动模式:不活跃(-1 的 MVPA)、周末战士(每周-1 的运动量≥150 分钟,其中≥50% 的总 MVPA 发生在 1-2 天内)和定期运动(每周-1 的运动量≥150 分钟,但不符合周末战士标准)。我们发现,与经常活动的模式相比,周末战士模式与痴呆症、中风、帕金森病、抑郁症和焦虑症的风险同样较低。我们的研究结果突出表明,周末战士模式是预防性干预策略的潜在替代方案,特别是对于那些无法保持日常活动习惯的人。
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引用次数: 0
Restoration of cervical lymphatic vessel function in aging rescues cerebrospinal fluid drainage. 在衰老过程中恢复颈部淋巴管功能可挽救脑脊液引流。
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-15 DOI: 10.1038/s43587-024-00691-3
Ting Du, Aditya Raghunandan, Humberto Mestre, Virginia Plá, Guojun Liu, Antonio Ladrón-de-Guevara, Evan Newbold, Paul Tobin, Daniel Gahn-Martinez, Saurav Pattanayak, Qinwen Huang, Weiguo Peng, Maiken Nedergaard, Douglas H Kelley

Cervical lymphatic vessels (cLVs) have been shown to drain solutes and cerebrospinal fluid (CSF) from the brain. However, their hydrodynamical properties have never been evaluated in vivo. Here, we developed two-photon optical imaging with particle tracking in vivo of CSF tracers (2P-OPTIC) in superficial and deep cLVs of mice, characterizing their flow and showing that the major driver is intrinsic pumping by contraction of the lymphatic vessel wall. Moreover, contraction frequency and flow velocity were reduced in aged mice, which coincided with a reduction in smooth muscle actin expression. Slowed flow in aged mice was rescued using topical application of prostaglandin F, a prostanoid that increases smooth muscle contractility, which restored lymphatic function in aged mice and enhanced central nervous system clearance. We show that cLVs are important regulators of CSF drainage and that restoring their function is an effective therapy for improving clearance in aging.

研究表明,颈淋巴管(cLV)能从大脑中排出溶质和脑脊液(CSF)。然而,它们的流体力学特性从未在体内进行过评估。在这里,我们对小鼠浅层和深层 cLV 中的 CSF 示踪剂进行了活体粒子跟踪双光子光学成像(2P-OPTIC),描述了它们的流动特性,并显示主要驱动力是淋巴管壁收缩产生的内在泵送。此外,老龄小鼠的收缩频率和流速降低,这与平滑肌肌动蛋白表达的减少相吻合。通过局部应用前列腺素 F2α(一种能增加平滑肌收缩力的类前列腺素),衰老小鼠的流速减慢得以缓解,从而恢复了衰老小鼠的淋巴功能,并增强了中枢神经系统的清除能力。我们的研究表明,cLVs 是 CSF 引流的重要调节因子,恢复它们的功能是改善衰老小鼠清除能力的有效疗法。
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引用次数: 0
Proteomics identifies potential immunological drivers of postinfection brain atrophy and cognitive decline 蛋白质组学确定了感染后脑萎缩和认知能力下降的潜在免疫驱动因素。
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-14 DOI: 10.1038/s43587-024-00682-4
Michael R. Duggan, Zhongsheng Peng, Pyry N. Sipilä, Joni V. Lindbohm, Jingsha Chen, Yifei Lu, Christos Davatzikos, Guray Erus, Timothy J. Hohman, Shea J. Andrews, Julián Candia, Toshiko Tanaka, Cassandra M. Joynes, Chelsea X. Alvarado, Mike A. Nalls, Jenifer Cordon, Gulzar N. Daya, Yang An, Alexandria Lewis, Abhay Moghekar, Priya Palta, Josef Coresh, Luigi Ferrucci, Mika Kivimäki, Keenan A. Walker
Infections have been associated with the incidence of Alzheimer disease and related dementias, but the mechanisms responsible for these associations remain unclear. Using a multicohort approach, we found that influenza, viral, respiratory, and skin and subcutaneous infections were associated with increased long-term dementia risk. These infections were also associated with region-specific brain volume loss, most commonly in the temporal lobe. We identified 260 out of 942 immunologically relevant proteins in plasma that were differentially expressed in individuals with an infection history. Of the infection-related proteins, 35 predicted volumetric changes in brain regions vulnerable to infection-specific atrophy. Several of these proteins, including PIK3CG, PACSIN2, and PRKCB, were related to cognitive decline and plasma biomarkers of dementia (Aβ42/40, GFAP, NfL, pTau-181). Genetic variants that influenced expression of immunologically relevant infection-related proteins, including ITGB6 and TLR5, predicted brain volume loss. Our findings support the role of infections in dementia risk and identify molecular mediators by which infections may contribute to neurodegeneration. This study reveals how infections that increase long-term dementia risk can contribute to longitudinal brain volume loss and regulate immunological proteins in plasma, and which of these proteins may drive infection-specific neurodegeneration.
感染与阿尔茨海默病和相关痴呆症的发病率有关,但造成这些关联的机制仍不清楚。我们采用多队列方法研究发现,流感、病毒、呼吸道、皮肤和皮下注射感染与长期痴呆症风险增加有关。这些感染还与特定区域的脑容量损失有关,最常见的是颞叶。在血浆中的 942 种免疫相关蛋白质中,我们发现 260 种蛋白质在有感染史的人体内有不同程度的表达。在这些与感染相关的蛋白质中,有 35 种预测了易受感染特异性萎缩影响的脑区的体积变化。其中一些蛋白质,包括 PIK3CG、PACSIN2 和 PRKCB,与认知能力下降和痴呆症血浆生物标志物(Aβ42/40、GFAP、NfL、pTau-181)有关。影响免疫相关感染蛋白(包括 ITGB6 和 TLR5)表达的基因变异可预测脑容量的损失。我们的研究结果支持感染在痴呆症风险中的作用,并确定了感染可能导致神经退行性变的分子介质。
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引用次数: 0
Nonlinear dynamics of multi-omics profiles during human aging. 人类衰老过程中多组学特征的非线性动态变化。
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-14 DOI: 10.1038/s43587-024-00692-2
Xiaotao Shen, Chuchu Wang, Xin Zhou, Wenyu Zhou, Daniel Hornburg, Si Wu, Michael P Snyder

Aging is a complex process associated with nearly all diseases. Understanding the molecular changes underlying aging and identifying therapeutic targets for aging-related diseases are crucial for increasing healthspan. Although many studies have explored linear changes during aging, the prevalence of aging-related diseases and mortality risk accelerates after specific time points, indicating the importance of studying nonlinear molecular changes. In this study, we performed comprehensive multi-omics profiling on a longitudinal human cohort of 108 participants, aged between 25 years and 75 years. The participants resided in California, United States, and were tracked for a median period of 1.7 years, with a maximum follow-up duration of 6.8 years. The analysis revealed consistent nonlinear patterns in molecular markers of aging, with substantial dysregulation occurring at two major periods occurring at approximately 44 years and 60 years of chronological age. Distinct molecules and functional pathways associated with these periods were also identified, such as immune regulation and carbohydrate metabolism that shifted during the 60-year transition and cardiovascular disease, lipid and alcohol metabolism changes at the 40-year transition. Overall, this research demonstrates that functions and risks of aging-related diseases change nonlinearly across the human lifespan and provides insights into the molecular and biological pathways involved in these changes.

衰老是一个复杂的过程,几乎与所有疾病都有关联。了解衰老背后的分子变化并确定衰老相关疾病的治疗靶点,对于延长健康寿命至关重要。尽管许多研究探讨了衰老过程中的线性变化,但在特定时间点之后,衰老相关疾病的患病率和死亡风险会加快,这表明研究非线性分子变化的重要性。在这项研究中,我们对年龄在 25 岁至 75 岁之间的 108 名参与者的纵向人类队列进行了全面的多组学分析。这些参与者居住在美国加利福尼亚州,追踪时间中位数为 1.7 年,最长追踪时间为 6.8 年。分析结果表明,衰老分子标记的非线性模式是一致的,在大约 44 岁和 60 岁这两个主要时期出现了严重的失调。此外,还发现了与这些时期相关的不同分子和功能途径,如免疫调节和碳水化合物代谢在 60 岁过渡期发生变化,心血管疾病、脂质和酒精代谢在 40 岁过渡期发生变化。总之,这项研究表明,与衰老相关的疾病的功能和风险在人的一生中会发生非线性变化,并提供了有关这些变化所涉及的分子和生物途径的见解。
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引用次数: 0
Exploring how APOE ε4 increases Alzheimer’s disease risk in women 探索 APOE ε4 如何增加女性患阿尔茨海默病的风险
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-12 DOI: 10.1038/s43587-024-00698-w
George Andrew S. Inglis
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引用次数: 0
Real-life intrinsic capacity screening data from the ICOPE-Care program 来自 ICOPE-Care 计划的真实内在能力筛选数据。
IF 17 Q1 CELL BIOLOGY Pub Date : 2024-08-09 DOI: 10.1038/s43587-024-00684-2
Philipe de Souto Barreto, Emmanuel Gonzalez-Bautista, Heike A. Bischoff-Ferrari, Vitor Pelegrim de Oliveira, Renato Gorga Bandeira de Mello, Sandrine Andrieu, Caroline Berbon, Neda Tavassoli, John R. Beard, Yves Rolland, Maria Eugenia Soto Martín, Bruno Vellas
The Integrated Care for Older People (ICOPE) program is a healthcare pathway that uses a screening test for intrinsic capacity (IC) as its entry point. However, real-life data informing on how IC domains cluster and change over time, as well as their clinical utility, are lacking. Using primary healthcare screening data from more than 20,000 French adults 60 years of age or older, this study identified four clusters of IC impairment: ‘Low impairment’ (most prevalent), ‘Cognition+Locomotion+Hearing+Vision’, ‘All IC impaired’ and ‘Psychology+Vitality+Vision’. Compared to individuals with ‘Low impairment’, those in the other clusters had higher likelihood of having frailty and limitations in both activities of daily living (ADL) and instrumental activities of daily living (IADL), with the strongest associations being observed for ‘All IC impaired’. This study found that ICOPE screening might be a useful tool for patient risk stratification in clinical practice, with a higher number of IC domains impaired at screening indicating a higher probability of functional decline. The Integrated Care for Older People (ICOPE) program was developed to promote a function-centered and individualized approach to healthy aging, but it is not yet widely implemented. In this study, de Souto Barreto et al. used early-stage ICOPE data collected in primary healthcare from more than 20,000 older adults to characterize patterns of intrinsic capacity impairment and associated odds of frailty and disability.
老年人综合护理(ICOPE)计划是一种以内在能力(IC)筛查测试为切入点的医疗保健途径。然而,目前还缺乏有关 IC 领域如何聚类、随时间变化及其临床效用的真实数据。本研究利用 2 万多名 60 岁或以上法国成年人的初级医疗保健筛查数据,确定了四个 IC 损伤群组:"低损伤"(最普遍)、"认知+运动+听力+视力"、"所有 IC 损伤 "和 "心理+活力+视力"。与 "功能缺损程度低 "的人相比,其他群组中的人在日常生活活动(ADL)和工具性日常生活活动(IADL)方面出现虚弱和受限的可能性更高,其中 "所有 IC 功能缺损 "的关联性最强。这项研究发现,ICOPE 筛查可能是临床实践中对患者进行风险分层的有用工具,筛查时受损的 IC 领域越多,表明功能衰退的可能性越大。
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引用次数: 0
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Nature aging
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