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Genetic and non-genetic factors influencing the therapeutic response of valproic acid in pediatric epileptic patients. 影响小儿癫痫患者丙戊酸治疗反应的遗传和非遗传因素。
Pub Date : 2025-02-01 Epub Date: 2024-12-22 DOI: 10.1080/17410541.2024.2441655
Changsong Wu, Jianghuan Zheng, Yanling Pan, Ruyu Tao, Zhijun Zhong, Chaozhi Qian, Heng Liang, Haijun Wu

Aims: Considerable inter-individual variability in the efficacy of valproic acid (VPA) has been reported, with approximately 20-45% of patients failing to achieve satisfactory seizure control after VPA monotherapy. The aim of this study was to investigate the influence of non-genetic and genetic factors on 12-month VPA-response in a cohort of 194 pediatric patients.

Materials & methods: Trough concentrations were determined, and a panel of 48 variants located in pharmacokinetic and pharmacodynamic gene were genotyped.

Results: Aetiology was highlighted as a significant factor for the response to VPA. Specifically, patients with idiopathic epilepsy demonstrated poorer 12-month outcomes (p < 0.001). Trough VPA concentrations did not significantly affect outcomes. Marginal association was found between VPA efficacy and the following genetic variants: GABRA1 rs10068980 (p = 0.02), SLC16A1 rs7169 (p = 0.02), ABCC2 rs1885301 (p = 0.092), ACADM rs1251079 (p = 0.061) and GABRA1 rs6883877 (p = 0.085), as indicated by Fisher's exact test. A significant cumulative effect of two genetic factors (GABRA1 rs10068980 and SLC16A1 rs7169) was observed after a multiple logistic analysis, with ORs of 2.828 (1.213, 6.594) and 4.066 (1.148,14.398), respectively.

Conclusion: Our study indicated that GABRA1 rs10068980 and SLC16A1 rs7169 might serve as potential biomarkers for predicting the 12-month VPA treatment outcomes in pediatric patients with epilepsy.

目的:据报道,丙戊酸(VPA)的疗效存在相当大的个体差异,大约20-45%的患者在VPA单药治疗后未能达到令人满意的癫痫控制。本研究的目的是探讨非遗传和遗传因素对194例儿科患者12个月vpa反应的影响。材料与方法:确定谷浓度,并对48个位于药代动力学和药效学基因的变异进行基因分型。结果:病因学是影响VPA疗效的重要因素。具体而言,根据Fisher精确检验,特发性癫痫患者表现出较差的12个月预后(p GABRA1 rs10068980 (p = 0.02)、SLC16A1 rs7169 (p = 0.02)、ABCC2 rs1885301 (p = 0.092)、ACADM rs1251079 (p = 0.061)和GABRA1 rs6883877 (p = 0.085)。经多元logistic分析,GABRA1 rs10068980和SLC16A1 rs7169两个遗传因子的累积效应显著,or值分别为2.828(1.213,6.594)和4.066(1.148,14.398)。结论:我们的研究表明,GABRA1 rs10068980和SLC16A1 rs7169可能作为预测小儿癫痫患者12个月VPA治疗结果的潜在生物标志物。
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引用次数: 0
Personalized medicine in colorectal cancer: a comprehensive study of precision diagnosis and treatment. 结直肠癌个体化医疗:精准诊断与治疗的综合研究。
Pub Date : 2025-02-01 Epub Date: 2025-02-09 DOI: 10.1080/17410541.2025.2459050
Fatemeh Gila, Somayeh Khoddam, Zahra Jamali, Mohmmad Ghasemian, Shayan Shakeri, Zeinab Dehghan, Jafar Fallahi

Colorectal cancer is a common and fatal disease that affects many people globally. CRC is classified as the third most prevalent cancer among males and the second most frequent cancer among females worldwide. The purpose of this article is to examine how personalized medicine might be used to treat colorectal cancer. The classification of colorectal cancer based on molecular profiling, including the detection of significant gene mutations, genomic instability, and gene dysregulation, is the main topic of this discussion. Advanced technologies and biomarkers are among the detection methods that are explored, demonstrating their potential for early diagnosis and precise prognosis. In addition, the essay explores the world of treatment possibilities by providing light on FDA-approved personalized medicine solutions that provide individualized and precise interventions based on patient characteristics. This article assesses targeted treatments like cetuximab and nivolumab, looks at the therapeutic usefulness of biomarkers like microsatellite instability (MSI) and circulating tumor DNA (ctDNA), and investigates new approaches to combat resistance. Through this, our review provides a thorough overview of personalized medicine in the context of colorectal cancer, ultimately highlighting its potential to revolutionize the field and improve patient care.

结直肠癌是一种常见的致命疾病,影响着全球许多人。在全球范围内,结直肠癌被列为男性中第三常见的癌症,女性中第二常见的癌症。本文的目的是研究如何使用个性化药物治疗结直肠癌。基于分子谱的结直肠癌分类,包括检测显著的基因突变、基因组不稳定和基因失调,是本讨论的主要主题。先进的技术和生物标志物是正在探索的检测方法之一,展示了它们在早期诊断和精确预后方面的潜力。此外,本文通过提供fda批准的个性化医疗解决方案,根据患者特征提供个性化和精确的干预措施,探索了治疗可能性的世界。本文评估了西妥昔单抗和纳武单抗等靶向治疗,研究了微卫星不稳定性(MSI)和循环肿瘤DNA (ctDNA)等生物标志物的治疗作用,并研究了对抗耐药性的新方法。通过这一点,我们的综述提供了个体化治疗在结直肠癌背景下的全面概述,最终强调了其革命性的领域和改善患者护理的潜力。
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引用次数: 0
The effect of genetic polymorphisms of AKT1 on PE susceptibility: a case-control study and insilico analysis. AKT1基因多态性对PE易感性的影响:病例对照研究和计算机分析。
Pub Date : 2025-02-01 Epub Date: 2024-12-31 DOI: 10.1080/17410541.2024.2446006
Mahnaz Rezaei, Marzieh Ghasemi, Mohsen Saravani, Hossein Shahraki-Ghadimi, Rahele Ghasemian Moghadam, Saeedeh Salimi

Background: Preeclampsia (PE) is a gestational disease associated with developing hypertension and proteinuria.

Aim: This study investigated the effects of AKT1 polymorphisms, a key enzyme in cellular signal transmission that regulates various cellular processes associated with PE.

Methods: The PCR-RFLP method was employed to genotype AKT1 rs2494732, rs1130233, and rs1130214 polymorphisms. In silico analysis was conducted using SpliceAid2, RNAsnp, and STRING tools.

Results: The AKT1 rs1130233 variant was associated with an increased risk of PE in log-additive and allelic models. A significant relationship was also observed between the rs1130214 variant and PE risk in several genetic models. Results from the SpliceAid2 server indicated that the rs2494732 A to G substitution creates a new binding site for the SRP-40 protein. Several key protein binding sites were lost for rs1130214 (C-to-A) and rs1130233 (C-to-T) mutations. However, RNAsnp analysis did not show significant changes in secondary structure.

Conclusion: In conclusion, the AKT1 rs1130233 and rs1130214 polymorphisms were found to be associated with an increased risk of PE.

背景:子痫前期(PE)是一种与高血压和蛋白尿相关的妊娠疾病。目的:本研究探讨了AKT1多态性的影响,AKT1多态性是细胞信号传递的关键酶,调节与PE相关的各种细胞过程。方法:采用PCR-RFLP方法对AKT1 rs2494732、rs1130233和rs1130214多态性进行基因分型。使用SpliceAid2、RNAsnp和STRING工具进行计算机分析。结果:在对数加性和等位基因模型中,AKT1 rs1130233变异与PE风险增加相关。在几个遗传模型中也观察到rs1130214变异与PE风险之间的显著关系。SpliceAid2服务器的结果表明,rs2494732 A到G的替换为SRP-40蛋白创建了一个新的结合位点。rs1130214 (C-to-A)和rs1130233 (C-to-T)突变丢失了几个关键的蛋白质结合位点。然而,RNAsnp分析未显示二级结构发生显著变化。结论:总之,AKT1 rs1130233和rs1130214多态性与PE风险增加相关。
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引用次数: 0
Pharmacogenomics education in China and the United States: advancing personalized medicine. 中国和美国的药物基因组学教育:推进个性化医疗。
Pub Date : 2025-02-01 Epub Date: 2024-12-14 DOI: 10.1080/17410541.2024.2441651
Quanlin Wang, Shusen Sun, Wei Zhang, Dan Cao, Yisu Jin

Pharmacogenomics (PGx), an integral part of functional genomics and molecular pharmacology, has evolved significantly over the past decade. Our study reveals that PGx education in China and the United States has made substantial progress, with a particular emphasis on integrating PGx into medical curricula and clinical practice, leading to improved therapeutic strategies and patient outcomes. Consequently, both China and the United States are dedicated to fostering advancements in PGx education. This paper reviews PGx education in these two countries, highlighting its importance and providing an in-depth look at the current status and challenges within universities and clinical settings. Furthermore, it offers recommendations for advancing PGx education and contemplates future trends in both nations.

药物基因组学(PGx)是功能基因组学和分子药理学的重要组成部分,在过去的十年中有了显著的发展。我们的研究表明,中国和美国的PGx教育已经取得了实质性进展,特别强调将PGx纳入医学课程和临床实践,从而改善了治疗策略和患者预后。因此,中美两国都致力于促进研究生教育的发展。本文回顾了这两个国家的PGx教育,强调了它的重要性,并深入研究了大学和临床环境中的现状和挑战。此外,它还提出了推进PGx教育的建议,并展望了两国的未来趋势。
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引用次数: 0
Technological advances in clinical individualized medication for cancer therapy: from genes to whole organism. 临床个体化治疗癌症的技术进展:从基因到整个生物体。
Pub Date : 2025-02-01 Epub Date: 2025-01-07 DOI: 10.1080/17410541.2024.2447224
Jiejing Kai, Xueling Liu, Meijia Wu, Pan Liu, Meihua Lin, Hongyu Yang, Qingwei Zhao

Efforts have been made to leverage technology to accurately identify tumor characteristics and predict how each cancer patient may respond to medications. This involves collecting data from various sources such as genomic data, histological information, functional drug profiling, and drug metabolism using techniques like polymerase chain reaction, sanger sequencing, next-generation sequencing, fluorescence in situ hybridization, immunohistochemistry staining, patient-derived tumor xenograft models, patient-derived organoid models, and therapeutic drug monitoring. The utilization of diverse detection technologies in clinical practice has made "individualized treatment" possible, but the desired level of accuracy has not been fully attained yet. Here, we briefly summarize the conventional and state-of-the-art technologies contributing to individualized medication in clinical settings, aiming to explore therapy options enhancing clinical outcomes.

人们一直在努力利用技术来准确识别肿瘤特征,并预测每个癌症患者对药物的反应。这包括从各种来源收集数据,如基因组数据、组织学信息、功能药物谱和药物代谢,使用聚合酶链反应、桑格测序、下一代测序、荧光原位杂交、免疫组织化学染色、患者来源的肿瘤异种移植模型、患者来源的类器官模型和治疗药物监测等技术。临床实践中多种检测技术的应用使“个体化治疗”成为可能,但所需的准确性尚未完全达到。在这里,我们简要地总结了在临床环境中有助于个体化治疗的传统和最先进的技术,旨在探索提高临床结果的治疗选择。
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引用次数: 0
A novel TGFβR2 splice variant in patient with aortic aneurysm and family history for aortic dissection: a case report. 主动脉瘤和主动脉夹层家族史患者的新型 TGFβR2 剪接变体:病例报告。
Pub Date : 2024-04-18 DOI: 10.2217/pme-2023-0135
Cecilia Vecoli, I. Foffa, Simona Vittorini, N. Botto, Augusto Esposito, Sabrina Costa, Valeria Piagneri, P. Festa, L. Ait-Ali
We report the clinical presentation and genetic screening of a 31-year-old man with dilatation of the aortic root and ascending aorta and a positive family history for aortic dissection and sudden death. A novel heterozygous variant in a splice acceptor site (c.1600-1G>T) of TGFβR2 gene was identified by using a targeted multi-gene panel analysis. Bioinformatics tools predicted that the c.1600-1G>T variant is pathogenic by altering acceptor splice site at - 1 position affecting pre-mRNA splicing. These data confirm that the diverging splicing in the TGF-β pathway genes may be an important process in aneurismal disease and emphasize the utility of genetic sequencing in the identification of high-risk patients for a more patient's management able to improve outcomes and minimize costs for the care of patients with heritable thoracic aortic aneurysm and dissection.
我们报告了一名患有主动脉根部和升主动脉扩张、主动脉夹层和猝死阳性家族史的 31 岁男性的临床表现和基因筛查。通过有针对性的多基因面板分析,发现了 TGFβR2 基因剪接受体位点(c.1600-1G>T)上的一个新型杂合变异。生物信息学工具预测,c.1600-1G>T 变体通过改变 - 1 位的剪接受体位点影响前 mRNA 的剪接而致病。这些数据证实了 TGF-β 通路基因的剪接分歧可能是动脉瘤疾病的一个重要过程,并强调了基因测序在识别高危患者方面的实用性,以便对更多的患者进行管理,从而改善遗传性胸主动脉瘤和夹层患者的治疗效果并最大限度地降低成本。
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引用次数: 0
The genetic landscape of chromosomal aberrations in 3776 Vietnamese fetuses with clinical anomalies during pregnancy. 3776 名越南妊娠期临床异常胎儿染色体畸变的遗传情况。
Pub Date : 2024-04-04 DOI: 10.2217/pme-2023-0113
D. Tran, Minh Ngoc Phan, Hong Thuy Dao, Hong-Dang Luu Nguyen, Duy-Anh Nguyen, Quang-Thanh Le, Diem-Tuyet Thi Hoang, Nhat-Thang Tran, Thi Minh Thi Ha, Thuy Linh Dinh, C. Nguyen, Kim Phuong Thi Doan, Lan-Anh Thi Luong, Ta Son Vo, Thu Huong Nhat Trinh, V. Nguyen, Phuong-Anh Ngoc Vo, Y. Nguyen, My-An Dinh, Phuoc-Loc Doan, T. T. Do, Q. Nguyen, D. Truong, Hoai-Nghia Nguyen, Minh-Duy Phan, Hung-Sang Tang, H. Giang
Background: Copy number variation sequencing (CNV-seq) is a powerful tool to discover structural genomic variation, but limitations associated with its retrospective study design and inadequate diversity of participants can be impractical for clinical application. Aim: This study aims to use CNV-seq to assess chromosomal aberrations in pregnant Vietnamese women. Materials & methods: A large-scale study was conducted on 3776 pregnant Vietnamese women with abnormal ultrasound findings. Results: Chromosomal aberrations were found in 448 (11.86%) women. Of these, 274 (7.26%) had chromosomal aneuploidies and 174 (4.61%) carried pathogenic/likely pathogenic CNVs. Correlations were established between chromosomal aberrations and various phenotypic markers. Conclusion: This comprehensive clinical study illuminates the pivotal role of CNV-seq in prenatal diagnosis for pregnancies featuring fetal ultrasound anomalies.
背景:拷贝数变异测序(CNV-seq)是发现基因组结构变异的有力工具,但其回顾性研究设计和参与者多样性不足等局限性可能导致临床应用不切实际。目的:本研究旨在利用 CNV-seq 评估越南孕妇的染色体畸变情况。材料与方法:对 3776 名超声检查结果异常的越南孕妇进行了大规模研究。结果在 448 名(11.86%)孕妇中发现了染色体畸变。其中,274 人(7.26%)患有染色体非整倍体,174 人(4.61%)携带致病/可能致病的 CNV。染色体畸变与各种表型标记之间存在相关性。结论这项全面的临床研究揭示了 CNV-seq 在胎儿超声异常妊娠产前诊断中的关键作用。
{"title":"The genetic landscape of chromosomal aberrations in 3776 Vietnamese fetuses with clinical anomalies during pregnancy.","authors":"D. Tran, Minh Ngoc Phan, Hong Thuy Dao, Hong-Dang Luu Nguyen, Duy-Anh Nguyen, Quang-Thanh Le, Diem-Tuyet Thi Hoang, Nhat-Thang Tran, Thi Minh Thi Ha, Thuy Linh Dinh, C. Nguyen, Kim Phuong Thi Doan, Lan-Anh Thi Luong, Ta Son Vo, Thu Huong Nhat Trinh, V. Nguyen, Phuong-Anh Ngoc Vo, Y. Nguyen, My-An Dinh, Phuoc-Loc Doan, T. T. Do, Q. Nguyen, D. Truong, Hoai-Nghia Nguyen, Minh-Duy Phan, Hung-Sang Tang, H. Giang","doi":"10.2217/pme-2023-0113","DOIUrl":"https://doi.org/10.2217/pme-2023-0113","url":null,"abstract":"Background: Copy number variation sequencing (CNV-seq) is a powerful tool to discover structural genomic variation, but limitations associated with its retrospective study design and inadequate diversity of participants can be impractical for clinical application. Aim: This study aims to use CNV-seq to assess chromosomal aberrations in pregnant Vietnamese women. Materials & methods: A large-scale study was conducted on 3776 pregnant Vietnamese women with abnormal ultrasound findings. Results: Chromosomal aberrations were found in 448 (11.86%) women. Of these, 274 (7.26%) had chromosomal aneuploidies and 174 (4.61%) carried pathogenic/likely pathogenic CNVs. Correlations were established between chromosomal aberrations and various phenotypic markers. Conclusion: This comprehensive clinical study illuminates the pivotal role of CNV-seq in prenatal diagnosis for pregnancies featuring fetal ultrasound anomalies.","PeriodicalId":94167,"journal":{"name":"Personalized medicine","volume":"76 6","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140741524","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Preliminary study of identified novel susceptibility loci for HAPE risk in a Chinese male Han population. 在中国汉族男性人群中初步研究已发现的新的 HAPE 风险易感基因位点。
Pub Date : 2024-01-01 Epub Date: 2024-06-28 DOI: 10.1080/17410541.2024.2365617
Beibei Zhao, Changchun Liu, Yijin Qi, Tianyi Zhang, Yuhe Wang, Xue He, Li Wang, Tianbo Jin

High altitude pulmonary edema (HAPE) is a life-threatening form of non-cardiogenic pulmonary edema. In recent years, association studies have become the main method for identifying HAPE genetic loci. A genome-wide association study (GWAS) of HAPE risk-associated loci was performed in Chinese male Han individuals (164 HAPE cases and 189 healthy controls) by the Precision Medicine Diversity Array Chip with 2,771,835 loci (Applied Biosystems Axiom™). Eight overlapping candidate loci in CCNG2, RP11-445O3.2, NUPL1 and WWOX were finally selected. In silico functional analyses displayed the PPI network, functional enrichment and signal pathways related to CCNG2, NUPL1, WWOX and NRXN1. This study provides data supplements for HAPE susceptibility gene loci and new insights into HAPE susceptibility.

高原肺水肿(HAPE)是一种危及生命的非心源性肺水肿。近年来,关联研究已成为确定 HAPE 遗传位点的主要方法。研究人员利用包含 2,771,835 个位点的精准医学多样性阵列芯片(Applied Biosystems Axiom™)对中国男性汉族个体(164 例 HAPE 病例和 189 例健康对照)进行了 HAPE 风险相关位点的全基因组关联研究(GWAS)。最终选出了 CCNG2、RP11-445O3.2、NUPL1 和 WWOX 中的八个重叠候选位点。硅功能分析显示了与 CCNG2、NUPL1、WWOX 和 NRXN1 相关的 PPI 网络、功能富集和信号通路。这项研究为 HAPE 易感基因位点提供了数据补充,并为了解 HAPE 易感性提供了新的视角。
{"title":"Preliminary study of identified novel susceptibility loci for HAPE risk in a Chinese male Han population.","authors":"Beibei Zhao, Changchun Liu, Yijin Qi, Tianyi Zhang, Yuhe Wang, Xue He, Li Wang, Tianbo Jin","doi":"10.1080/17410541.2024.2365617","DOIUrl":"10.1080/17410541.2024.2365617","url":null,"abstract":"<p><p>High altitude pulmonary edema (HAPE) is a life-threatening form of non-cardiogenic pulmonary edema. In recent years, association studies have become the main method for identifying HAPE genetic loci. A genome-wide association study (GWAS) of HAPE risk-associated loci was performed in Chinese male Han individuals (164 HAPE cases and 189 healthy controls) by the Precision Medicine Diversity Array Chip with 2,771,835 loci (Applied Biosystems Axiom™). Eight overlapping candidate loci in <i>CCNG2</i>, <i>RP11-445O3.2</i>, <i>NUPL1</i> and <i>WWOX</i> were finally selected. <i>In silico</i> functional analyses displayed the PPI network, functional enrichment and signal pathways related to <i>CCNG2</i>, <i>NUPL1</i>, <i>WWOX</i> and <i>NRXN1</i>. This study provides data supplements for HAPE susceptibility gene loci and new insights into HAPE susceptibility.</p>","PeriodicalId":94167,"journal":{"name":"Personalized medicine","volume":" ","pages":"227-241"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141474155","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Incidence of statin-associated muscle symptoms in patients taking statins with RYR1 or CACNA1S variants. 服用他汀类药物并伴有 RYR1 或 CACNA1S 变异的患者中他汀类药物相关肌肉症状的发生率。
Pub Date : 2024-01-01 Epub Date: 2024-05-09 DOI: 10.1080/17410541.2024.2342223
Natasha J Petry, Amanda Massmann, Megan Bell, April Schultz, Joel Van Heukelom

Background: Statins are commonly used medications. Variants in SLCO1B1, CYP2C9, and ABCG2 are known predictors of muscle effects when taking statins. More exploratory genes include RYR1 and CACNA1S, which can also be associated with disease conditions. Methods: Patients with pathogenic/likely pathogenic variants in RYR1 or CACNA1S were identified through an elective genomic testing program. Through chart review, patients with a history of statin use were assessed for statin-associated muscle symptoms (SAMS) along with collection of demographics and other known risk factors for SAMS. Results: Of the 23 patients who had a pathogenic or likely pathogenic RYR1 or CACNA1S variant found, 12 had previous statin use; of these, SAMS were identified in four patients. Conclusion: These data contribute to previous literature suggesting patients with RYR1 variants may have an increased SAMS risk. Additional research will be helpful in further investigating this relationship and providing recommendations.

背景:他汀类药物是常用药物:他汀类药物是常用药物。已知 SLCO1B1、CYP2C9 和 ABCG2 的变异可预测服用他汀类药物对肌肉的影响。更具探索性的基因包括 RYR1 和 CACNA1S,它们也可能与疾病相关。研究方法通过选择性基因组检测项目确定 RYR1 或 CACNA1S 中存在致病性/可能致病性变异的患者。通过病历审查,对有他汀类药物使用史的患者进行他汀类药物相关肌肉症状(SAMS)评估,同时收集人口统计学资料和其他已知的 SAMS 风险因素。结果:在发现致病性或可能致病性 RYR1 或 CACNA1S 变异的 23 位患者中,有 12 位曾使用过他汀类药物;其中,有 4 位患者发现了 SAMS。结论这些数据补充了之前的文献,表明 RYR1 变体患者的 SAMS 风险可能会增加。更多的研究将有助于进一步调查这种关系并提出建议。
{"title":"Incidence of statin-associated muscle symptoms in patients taking statins with <i>RYR1</i> or <i>CACNA1S</i> variants.","authors":"Natasha J Petry, Amanda Massmann, Megan Bell, April Schultz, Joel Van Heukelom","doi":"10.1080/17410541.2024.2342223","DOIUrl":"10.1080/17410541.2024.2342223","url":null,"abstract":"<p><p><b>Background:</b> Statins are commonly used medications. Variants in <i>SLCO1B1</i>, <i>CYP2C9</i>, and <i>ABCG2</i> are known predictors of muscle effects when taking statins. More exploratory genes include <i>RYR1</i> and <i>CACNA1S</i>, which can also be associated with disease conditions. <b>Methods:</b> Patients with pathogenic/likely pathogenic variants in <i>RYR1</i> or <i>CACNA1S</i> were identified through an elective genomic testing program. Through chart review, patients with a history of statin use were assessed for statin-associated muscle symptoms (SAMS) along with collection of demographics and other known risk factors for SAMS. <b>Results:</b> Of the 23 patients who had a pathogenic or likely pathogenic <i>RYR1</i> or <i>CACNA1S</i> variant found, 12 had previous statin use; of these, SAMS were identified in four patients. <b>Conclusion:</b> These data contribute to previous literature suggesting patients with <i>RYR1</i> variants may have an increased SAMS risk. Additional research will be helpful in further investigating this relationship and providing recommendations.</p>","PeriodicalId":94167,"journal":{"name":"Personalized medicine","volume":" ","pages":"145-150"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140900746","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Five genes identified as prognostic markers for colorectal cancer through the integration of genome-wide association study and expression quantitative trait loci data. 通过整合全基因组关联研究和表达定量性状位点数据,确定五个基因为结直肠癌的预后标记物。
Pub Date : 2024-01-01 Epub Date: 2024-02-21 DOI: 10.2217/pme-2023-0103
Cuizhen Zhang, Wenjie Huang, Wanjie Niu, Huiying Yang, Yingyi Zheng, Xuan Gao, Xiaoyan Qiu

Background: Colorectal cancer (CRC) is a prominent form of cancer globally, ranking second in terms of prevalence and serving as a leading cause of cancer-related deaths, but the underlying biological interpretation remains largely unknown. Methods: We used the summary data-based Mendelian randomization method to integrate CRC genome-wide association studies (ncase = 7062; ncontrol = 195,745) and expression quantitative trait loci summary data in peripheral whole blood (Consortium for Architecture of Gene Expression: n = 2765; Genotype-Tissue Expression [v8]: n = 755) and colon tissue (colon-transverse: n = 406; colon-sigmoid: n = 373) and identified related genes. Results: Genes ABTB1, CYP21A2, NLRP1, PHKG1 and PIP5K1C have emerged as significant prognostic markers for CRC patient survival. Functional analysis revealed their involvement in cancer cell migration and invasion mechanisms, providing valuable insights for the development of future anti-CRC drugs. Conclusion: We successfully identified five CRC risk genes, providing new insights and research directions for the effective mechanisms of CRC.

背景:结直肠癌(CRC)是全球常见的癌症形式,发病率位居第二,也是癌症相关死亡的主要原因,但其潜在的生物学解释在很大程度上仍然未知。研究方法我们使用基于汇总数据的孟德尔随机化方法整合了 CRC 全基因组关联研究(ncase = 7062; ncontrol = 195,745 )和外周全血(Consortium for Architecture of Gene Expression: n = 2765; Genotype-Tissue Expression [v8]: n = 755)和结肠组织(colon-transverse: n = 406; colon-sigmoid: n = 373)中的表达定量性状位点汇总数据,并确定了相关基因。结果基因 ABTB1、CYP21A2、NLRP1、PHKG1 和 PIP5K1C 已成为 CRC 患者生存的重要预后标记。功能分析显示,它们参与了癌细胞迁移和侵袭机制,为未来抗 CRC 药物的开发提供了宝贵的启示。结论我们成功鉴定了五个 CRC 风险基因,为 CRC 的有效机制提供了新的见解和研究方向。
{"title":"Five genes identified as prognostic markers for colorectal cancer through the integration of genome-wide association study and expression quantitative trait loci data.","authors":"Cuizhen Zhang, Wenjie Huang, Wanjie Niu, Huiying Yang, Yingyi Zheng, Xuan Gao, Xiaoyan Qiu","doi":"10.2217/pme-2023-0103","DOIUrl":"10.2217/pme-2023-0103","url":null,"abstract":"<p><p><b>Background:</b> Colorectal cancer (CRC) is a prominent form of cancer globally, ranking second in terms of prevalence and serving as a leading cause of cancer-related deaths, but the underlying biological interpretation remains largely unknown. <b>Methods:</b> We used the summary data-based Mendelian randomization method to integrate CRC genome-wide association studies (n<sub>case</sub> = 7062; n<sub>control</sub> = 195,745) and expression quantitative trait <i>loci</i> summary data in peripheral whole blood (Consortium for Architecture of Gene Expression: n = 2765; Genotype-Tissue Expression [v8]: n = 755) and colon tissue (colon-transverse: n = 406; colon-sigmoid: n = 373) and identified related genes. <b>Results:</b> Genes <i>ABTB1</i>, <i>CYP21A2</i>, <i>NLRP1</i>, <i>PHKG1</i> and <i>PIP5K1C</i> have emerged as significant prognostic markers for CRC patient survival. Functional analysis revealed their involvement in cancer cell migration and invasion mechanisms, providing valuable insights for the development of future anti-CRC drugs. <b>Conclusion:</b> We successfully identified five CRC risk genes, providing new insights and research directions for the effective mechanisms of CRC.</p>","PeriodicalId":94167,"journal":{"name":"Personalized medicine","volume":" ","pages":"103-116"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139914372","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Personalized medicine
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