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Development of an AI Platform for Advanced Breast Cancer Management. 开发用于晚期乳腺癌管理的人工智能平台。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241095
Thomas Alassane Ouattara, Seydou Golo Barro, Pascal Staccini

This article explores the transition from a traditional histopathological examination system to an innovative platform using artificial intelligence (AI) for breast cancer detection from histopathological images in Burkina Faso. The existing system is analyzed in detail, highlighting the steps of querying, sample preparation, analysis by the pathologist, and validation by the physician. From this analysis, the needs and challenges are identified, emphasizing the opportunities for AI to improve the efficiency and accuracy of the diagnosis. The design of the AI platform is then presented, including data collection, AI model development, and its integration into existing processes. Finally, the expected results and implications for improving healthcare in Burkina Faso are discussed, highlighting the potential benefits and challenges to overcome for the successful adoption of this promising technology.

本文探讨了布基纳法索从传统的组织病理学检查系统过渡到使用人工智能(AI)从组织病理学图像检测乳腺癌的创新平台的过程。文章详细分析了现有系统,重点介绍了查询、样本准备、病理学家分析和医生验证等步骤。通过分析,确定了需求和挑战,强调了人工智能提高诊断效率和准确性的机会。然后介绍了人工智能平台的设计,包括数据收集、人工智能模型开发及其与现有流程的整合。最后,讨论了预期成果和对改善布基纳法索医疗保健的影响,强调了成功采用这一前景广阔的技术的潜在好处和需要克服的挑战。
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引用次数: 0
Suitability of the OMOP Common Data Model for Mapping Datasets of Medical Research Studies Using the Example of a Multicenter Registry. 以多中心登记处为例,说明 OMOP 通用数据模型在映射医学研究数据集方面的适用性。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241086
Milla Kurtz, Alfred Winter, Matthias Löbe

Common Data Models (CDM) are developed to solve integration problems that arise in the secondary use of health data. The OMOP CDM is such a model that is mainly used for healthcare data, so this paper examines whether it is also suitable for mapping research data. An exemplary research dataset is mapped to the model and the model is tested for suitability. For this purpose, an ETL process is first designed with the OHDSI tools and finally implemented with Talend Open Studio for Data Integration. The data quality is checked, and the mapping and the model, together with the tools, are evaluated. Overall, all but three data fields from the source dataset could be mapped to the OMOP model, so that the model's suitability for research data can be confirmed.

通用数据模型(CDM)的开发是为了解决医疗数据二次利用过程中出现的整合问题。OMOP CDM 就是这样一个主要用于医疗保健数据的模型,因此本文将研究它是否也适合映射研究数据。我们将一个示范性研究数据集映射到该模型中,并测试该模型是否适用。为此,首先使用 OHDSI 工具设计了一个 ETL 流程,最后使用 Talend Open Studio for Data Integration 实现了该流程。对数据质量进行检查,并对映射和模型以及工具进行评估。总体而言,除了三个数据字段外,源数据集的所有数据字段都可以映射到 OMOP 模型,因此可以确认该模型适用于研究数据。
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引用次数: 0
Measurement of Cumulative Drug Exposure from Clinical Data Warehouse. 从临床数据仓库中测量累积药物暴露。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241085
Mathilde Bories, Aurélie Bannay, Morgane Pierre-Jean, Guillaume Bouzille, Pascal Le Corre

Polypharmacy (PP) and hyperpolypharmacy (HPP), are prevalent among cancer patients and are associated with an increased risk of drug-drug interactions (DDI) and potentially inappropriate medications (PIM). This study aimed to characterize PP, HPP, DDI, and PIM in patients with hematological malignancies hospitalized for hematopoietic stem cell transplantation (HSCT) by introducing a novel metric: cumulative drug exposure. Clinical data warehouse (CDW) records were employed to develop algorithms that quantified patients' cumulative exposure to these prescribing determinants during hospitalization. This entailed determining the number of days during the hospital stay when the patient was exposed to PP, HPP, PIM and/or DDI. For PIM and DDI, the number of PIMs or DDIs administered per day was taken into account in this calculation. Among 339 HSCT patients, PP and HPP were highly prevalent (over 67% of HSCT patients), almost all patients experienced DDI (over 98% of HSCT patients) and almost all elderly patients were exposed to PIM (over 98% of HSCT patients). Cumulative drug exposure differed between allogeneic and autologous HSCT patients, with allogeneic patients being more exposed to HPP (28.5 days vs 4.7 days for autologous HSCT patients) and DDI (255.6 days vs 58.4 for autologous HSCT patients). This study proposes a novel approach to assessing the impact of prescribing determinants on patient outcomes and provides insights for future research into the association between drug exposure and adverse events. Indeed, the use of cumulative drug exposure as a metric provides a comprehensive view of patient exposure throughout hospitalization, thereby enhancing understanding of the impact of prescribing practices on clinical outcomes.

多药(PP)和超多药(HPP)在癌症患者中很普遍,与药物相互作用(DDI)和潜在用药不当(PIM)风险增加有关。本研究旨在通过引入一种新的指标:累积药物暴露量,描述因造血干细胞移植(HSCT)住院的血液恶性肿瘤患者的PP、HPP、DDI和PIM的特征。临床数据仓库(CDW)记录用于开发算法,量化患者在住院期间对这些处方决定因素的累积暴露。这就需要确定患者住院期间接触 PP、HPP、PIM 和/或 DDI 的天数。对于 PIM 和 DDI,计算时要考虑到每天使用的 PIM 或 DDI 的次数。在 339 名造血干细胞移植患者中,PP 和 HPP 的发病率很高(占造血干细胞移植患者的 67% 以上),几乎所有患者都经历过 DDI(占造血干细胞移植患者的 98% 以上),几乎所有老年患者都接触过 PIM(占造血干细胞移植患者的 98% 以上)。异基因造血干细胞移植患者和自体造血干细胞移植患者的累积药物暴露量不同,异基因造血干细胞移植患者的HPP(28.5天,自体造血干细胞移植患者为4.7天)和DDI(255.6天,自体造血干细胞移植患者为58.4天)暴露量更高。这项研究提出了一种新方法来评估处方决定因素对患者预后的影响,并为今后研究药物暴露与不良事件之间的关联提供了启示。事实上,使用累积药物暴露作为衡量标准可以全面了解患者在整个住院期间的药物暴露情况,从而加深对处方实践对临床结果影响的理解。
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引用次数: 0
Pill Dispenser with Telecare Extension. 带远程护理扩展功能的配药机。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241074
Sebastian-Bogdan Zigrea, Vasile Stoicu-Tivadar

The existing pill dispenser systems help elderly people to improve their quality of life, and medication adherence. But these systems lack interactive capabilities with caregivers, a crucial element in comprehensive home care management. The suggested CareConnect aims to bridge this gap by introducing a Telecare extension that not only manages medication adherence but also facilitates interaction between the patient and their caregivers. The system is described in terms of this new approach, the functions, hardware and software. The operation of the system is briefly described. A discussion about the advantages of CareConnect system and the future development directions is finally done as a conclusion.

现有的配药系统可以帮助老年人提高生活质量和服药依从性。但这些系统缺乏与护理人员的互动功能,而这正是全面家庭护理管理的关键因素。建议的 CareConnect 系统旨在弥补这一不足,它引入了远程护理扩展功能,不仅能管理服药情况,还能促进病人与护理人员之间的互动。本文将从这一新方法、功能、硬件和软件等方面对该系统进行介绍。此外,还简要介绍了系统的运行情况。最后讨论了 CareConnect 系统的优势和未来的发展方向。
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引用次数: 0
Securing a Generative AI-Powered Healthcare Chatbot. 确保生成式人工智能医疗聊天机器人的安全。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241091
Georgios Feretzakis, Athanasios Anastasiou, Stavros Pitoglou, Evgenia Paxinou, Aris Gkoulalas-Divanis, Konstantinos Kalodanis, Ioannis Tsapelas, Dimitris Kalles, Vassilios S Verykios

In Generative Artificial Intelligence (AI), Large Language Models (LLMs) like GPT-4, Gemini, Claude, and Llama, significantly impact healthcare by aiding in patient care, medical research, and administrative tasks. AI-powered chatbots offer real-time responses and manage chronic diseases, improving patient outcomes and operational efficiency. However, these models pose security and ethical challenges, necessitating robust data privacy, adversarial training, and ethical guidelines. This paper proposes a secure, ethical pipeline for deploying AI healthcare chatbots, integrating advanced privacy-preserving techniques and continuous security assessments to enhance data privacy, resilience, and user trust.

在生成式人工智能(AI)领域,大型语言模型(LLM),如 GPT-4、Gemini、Claude 和 Llama,通过协助病人护理、医学研究和管理任务,对医疗保健产生了重大影响。人工智能驱动的聊天机器人可提供实时响应并管理慢性疾病,从而改善患者的治疗效果并提高运营效率。然而,这些模型带来了安全和伦理挑战,需要强大的数据隐私、对抗性训练和伦理准则。本文提出了一种用于部署人工智能医疗聊天机器人的安全、道德管道,整合了先进的隐私保护技术和持续的安全评估,以增强数据隐私、弹性和用户信任。
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引用次数: 0
Survival Stacking Ensemble Model for Lung Cancer Risk Prediction. 用于肺癌风险预测的生存期叠加集合模型
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241083
Eduardo Alonso, Xabier Calle, Ibai Gurrutxaga, Andoni Beristain

The most well-established risk factor for lung cancer (LC) is smoking, responsible for approximately 85% of cases. The Lung Cancer Risk Assessment Tool (LCRAT) is a key advancement in this field, which predicts individual risk based on factors like smoking habits, demographic details, personal and family medical history, and environmental exposures. This paper proposes a model with fewer features that improves state of the art performance, using a simplified stacking ensemble, making it more accessible and easier to implement in routine healthcare practice. The data used in this work were derived from two cohorts in the United States: The National Lung Screening Trial (NLST) and the Prostate, Lung, Colorectal, and Ovarian (PLCO) Cancer Screening Trial. Both our model and LCRAT achieve an AUC of 0.799 and 0.782 on test respectively. In terms of percentage of positives, in the 50% of the population, both detect 0.766 and 0.754 of the cases. The ensemble of different survival models enhances robustness by mitigating the weakness of individual models and directly impacts the efficiency of the model, increasing the efficiency and generalizability.

肺癌(LC)最常见的风险因素是吸烟,约 85% 的病例都与吸烟有关。肺癌风险评估工具(LCRAT)是该领域的一项重要进展,它可根据吸烟习惯、人口统计学细节、个人和家族病史以及环境暴露等因素预测个人风险。本文提出了一种功能较少的模型,它采用简化的堆叠组合,提高了技术性能,使其更易于在常规医疗实践中使用。这项工作中使用的数据来自美国的两个队列:美国国家肺癌筛查试验(NLST)和前列腺癌、肺癌、结直肠癌和卵巢癌筛查试验(PLCO)。我们的模型和 LCRAT 在测试中的 AUC 分别为 0.799 和 0.782。就阳性比例而言,在 50%的人群中,两者分别检测出 0.766 和 0.754 个病例。不同生存模型的集合通过减轻单个模型的弱点而增强了稳健性,并直接影响到模型的效率,提高了效率和普适性。
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引用次数: 0
A Neurosurgical Instrument Segmentation Approach to Assess Microsurgical Movements. 评估显微手术移动的神经外科器械分割方法。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241089
Gleb Danilov, Oleg Pilipenko, Vasiliy Kostyumov, Sergey Trubetskoy, Narek Maloyan, Bulat Nutfullin, Eugeniy Ilyushin, David Pitskhelauri, Alexandra Zelenova, Andrey Bykanov

The ability to recognize anatomical landmarks, microsurgical instruments, and complex scenes and events in a surgical wound using computer vision presents new opportunities for studying microsurgery effectiveness. In this study, we aimed to develop an artificial intelligence-based solution for detecting, segmenting, and tracking microinstruments using a neurosurgical microscope. We have developed a technique to process videos from microscope camera, which involves creating a segmentation mask for the instrument and subsequently tracking it. We compared two segmentation approaches: (1) semantic segmentation using Visual Transformers (pre-trained domain-specific EndoViT model), enhanced with tracking as described by Cheng Y. et al. (our proposed approach), and (2) instance segmentation with tracking based on the YOLOv8l-seg architecture. We conducted experiments using the CholecSeg8k dataset and our proprietary set of neurosurgical videos (PSNV) from microscope. Our approach with tracking outperformed YOLOv8l-seg-based solutions and EndoViT model with no tracking on both CholecSeg8k (mean IoT = 0.8158, mean Dice = 0.8657) and PSNV (mean IoT = 0.7196, mean Dice = 0.8202) datasets. Our experiments with identifying neurosurgical instruments in a microscope's field of view showcase the high quality of these technologies and their potential for valuable applications.

利用计算机视觉识别解剖地标、显微手术器械以及手术伤口中的复杂场景和事件的能力,为研究显微手术的有效性提供了新的机遇。在这项研究中,我们旨在开发一种基于人工智能的解决方案,用于使用神经外科显微镜检测、分割和跟踪显微器械。我们开发了一种处理显微镜摄像头视频的技术,包括为器械创建一个分割掩膜,然后对其进行追踪。我们比较了两种分割方法:(1) 使用 Visual Transformers(预先训练好的特定领域 EndoViT 模型)进行语义分割,并按照 Cheng Y. 等人的方法(我们提出的方法)进行跟踪增强;(2) 基于 YOLOv8l-seg 架构的实例分割与跟踪。我们使用 CholecSeg8k 数据集和我们专有的显微镜神经外科视频集(PSNV)进行了实验。在 CholecSeg8k 数据集(平均 IoT = 0.8158,平均 Dice = 0.8657)和 PSNV 数据集(平均 IoT = 0.7196,平均 Dice = 0.8202)上,我们的跟踪方法优于基于 YOLOv8l-seg 的解决方案和无跟踪的 EndoViT 模型。我们在显微镜视场中识别神经外科器械的实验展示了这些技术的高质量及其有价值的应用潜力。
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引用次数: 0
Generating Synthetic Healthcare Dialogues in Emergency Medicine Using Large Language Models. 利用大型语言模型生成急诊医学中的合成医疗对话。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241099
Denis Moser, Matthias Bender, Murat Sariyar

Natural Language Processing (NLP) has shown promise in fields like radiology for converting unstructured into structured data, but acquiring suitable datasets poses several challenges, including privacy concerns. Specifically, we aim to utilize Large Language Models (LLMs) to extract medical information from dialogues between ambulance staff and patients to populate emergency protocol forms. However, we currently lack dialogues with known content that can serve as a gold standard for an evaluation. We designed a pipeline using the quantized LLM "Zephyr-7b-beta" for initial dialogue generation, followed by refinement and translation using OpenAI's GPT-4 Turbo. The MIMIC-IV database provided relevant medical data. The evaluation involved accuracy assessment via Retrieval-Augmented Generation (RAG) and sentiment analysis using multilingual models. Initial results showed a high accuracy of 94% with "Zephyr-7b-beta," slightly decreasing to 87% after refinement with GPT-4 Turbo. Sentiment analysis indicated a qualitative shift towards more positive sentiment post-refinement. These findings highlight the potential and challenges of using LLMs for generating synthetic medical dialogues, informing future NLP system development in healthcare.

自然语言处理(NLP)已在放射学等领域显示出将非结构化数据转换为结构化数据的前景,但获取合适的数据集却面临着一些挑战,其中包括隐私问题。具体来说,我们的目标是利用大型语言模型(LLMs)从救护人员和病人之间的对话中提取医疗信息,以填充紧急协议表格。然而,我们目前缺乏已知内容的对话,无法作为评估的黄金标准。我们设计了一个管道,使用量化 LLM "Zephyr-7b-beta "进行初始对话生成,然后使用 OpenAI 的 GPT-4 Turbo 进行细化和翻译。MIMIC-IV 数据库提供了相关的医疗数据。评估包括通过检索增强生成(RAG)进行准确性评估,以及使用多语言模型进行情感分析。初步结果显示,"Zephyr-7b-beta "的准确率高达 94%,在使用 GPT-4 Turbo 进行改进后,准确率略有下降,为 87%。情感分析表明,经过改进后,情感发生了质的变化,变得更加积极。这些发现凸显了使用 LLM 生成合成医疗对话的潜力和挑战,为未来医疗保健领域的 NLP 系统开发提供了参考。
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引用次数: 0
Achieving Digital Medicine Learning Outcomes Through an Interdisciplinary Course: A Pilot Study. 通过跨学科课程实现数字医学学习成果:试点研究。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241058
Annabelle Mielitz, Hendrik Friederichs, Anja Bittner, Urs-Vito Albrecht

Incorporating digital medicine into medical education equips students for the evolving landscape of healthcare. This study aimed to assess a digital medicine course developed at Bielefeld University by evaluating student attainment of learning outcomes outlined by Foadi et al. In the course, the students designed a digital application for various medical conditions, taking into account interdisciplinary factors. The course took place in 2023 with medical students who attended the course due to the focus of their studies. In a pilot study, the progress of ten participants was assessed using a pre-post survey design. Results revealed substantial improvement in students' achievement of learning outcomes post-course (median = 2, IQR 1-2) compared to pre-course (median = 3, IQR 3-4), suggesting the course's efficacy in effectively teaching digital medicine.

将数字医学纳入医学教育可使学生适应不断发展的医疗保健领域。本研究旨在评估比勒费尔德大学开发的数字医学课程,评估学生对 Foadi 等人概述的学习成果的掌握情况。该课程于 2023 年举办,参加者为医学专业的学生,他们的学习重点是该课程。在一项试点研究中,采用了事前事后调查的设计,对十名学员的学习进度进行了评估。结果显示,与课程前(中位数 = 3,IQR 3-4)相比,课程后(中位数 = 2,IQR 1-2)学生的学习成绩有了大幅提高,这表明该课程在有效开展数字医学教学方面卓有成效。
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引用次数: 0
Utilizing Open Source Clinical Information Systems in European Countries: Potential and Barriers. 欧洲国家利用开源临床信息系统:潜力与障碍。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241073
Fatma-Zahra Magdub, Sakirnth Nagarasa, Florian Frick, Murat Sariyar

GNU Health, an open-source clinical information system, offers a comprehensive solution for managing health records, hospital information, and laboratory data. Despite its robust functionality and cost-effective nature, GNU Health remains underutilized in the European healthcare context. This paper explores the potential benefits of implementing GNU Health in European healthcare systems, emphasizing its capacity for customization, integration, and scalability. We also examine the barriers to its widespread adoption, including regulatory challenges, interoperability issues, and resistance to change from established proprietary systems. Through one case study and expert interviews, we provide insights into why these obstacles can hardly be overcome.

GNU Health 是一个开源临床信息系统,为管理健康记录、医院信息和实验室数据提供了一个全面的解决方案。尽管 GNU Health 功能强大、成本低廉,但在欧洲医疗保健领域仍未得到充分利用。本文探讨了在欧洲医疗系统中实施 GNU Health 的潜在好处,强调了其定制、集成和可扩展性的能力。我们还探讨了广泛采用 GNU Health 的障碍,包括监管挑战、互操作性问题以及对既有专有系统变革的抵制。通过一个案例研究和专家访谈,我们深入探讨了这些障碍难以克服的原因。
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引用次数: 0
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Studies in health technology and informatics
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