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Recent highlights of the total synthesis of cyclic peptide natural products 近期重点介绍环肽天然产物的全合成。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-19 DOI: 10.1039/d4np00056k
Takayuki Doi , Masaya Kumashiro , Kosuke Ohsawa
Covering: 2020 to 2022
This review described the total synthesis of naturally occurring cyclic peptides with unique structures covering 2020 to 2022, i.e., darobactin A, pyritide A2, decatransin, mannopeptimycin β, α- and β-amanitins, orfamide A, and MA026, paying particular attention to the construction of their unique structures via macrocyclization.
本文综述了2020 - 2022年天然存在的具有独特结构的环肽的总合成,即darobactin A、pyritide A2、decatransin、mannopeptimycin β、α-和β-amanitins、orfamide A和MA026,重点介绍了它们通过大环化构建独特结构的方法。
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引用次数: 0
Mass spectrometry-based metabolomics approaches to interrogate host-microbiome interactions in mammalian systems. 基于质谱的代谢组学方法在哺乳动物系统中询问宿主-微生物组相互作用。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-16 DOI: 10.1039/d5np00021a
Atharva S Kulkarni, Guilherme M P Carrara, Jiangpeiyun Jin, Jarrod Laro, Thilini Peramuna, Laura-Isobel McCall, Neha Garg

Covering: 2015 to 2025Chemical crosstalk is universal to all life, niche-specific, and essential to thrive. This crosstalk is mediated by a large diversity of molecules, including metal ions, small molecules, polysaccharides, nucleic acids, lipids, and proteins. Among these, specialized small molecules referred to as natural products (NPs) play an important role in microbe-drug/environment interactions, microbe-microbe, and microbe-host interactions. Microbial communication using NPs allows microbes to sense quorum, form biofilms, eliminate competition, establish symbiosis, evade immune attack, and respond to stress. In most cases, the elucidation of small molecule mediators and effectors of microbe-host interactions presents a major challenge due to the relatively low abundance of microbial metabolites in a milieu of host, microbe, and environmental metabolites. Advances in analytical instrumentation, such as mass spectrometers, and both experimental as well as computational methods to analyze data, coupled with the use of model organisms, have enabled fundamental discoveries of mechanisms of small molecule-mediated host-microbe interactions. The focus of this review is to detail the approaches applied in the last decade to disentangle microbiome-derived NPs in human and murine model systems. Select recent findings from diverse biological ecosystems are discussed to inform relevant parallels and potential strategies for research in human health.

涵盖:2015年至2025年化学相声是所有生命普遍存在的,特定于小生境,是茁壮成长的必要条件。这种串扰是由多种分子介导的,包括金属离子、小分子、多糖、核酸、脂质和蛋白质。其中,被称为天然产物(NPs)的特殊小分子在微生物-药物/环境相互作用、微生物-微生物和微生物-宿主相互作用中发挥重要作用。微生物通过NPs进行交流,使微生物能够感知群体,形成生物膜,消除竞争,建立共生关系,逃避免疫攻击,并对压力做出反应。在大多数情况下,由于宿主、微生物和环境代谢物的环境中微生物代谢物的丰度相对较低,阐明微生物-宿主相互作用的小分子介质和效应物提出了一个主要挑战。分析仪器的进步,如质谱仪,以及实验和计算方法来分析数据,再加上模式生物的使用,使得小分子介导的宿主-微生物相互作用机制的基本发现成为可能。本综述的重点是详细介绍在过去十年中应用的方法来解开人类和小鼠模型系统中微生物组衍生的NPs。本文讨论了从不同生物生态系统中选择的最新发现,以告知人类健康研究的相关相似之处和潜在战略。
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引用次数: 0
Dietary substances and their glucuronides: structures, occurrence and biological activity 膳食物质及其葡糖苷:结构、分布和生物活性。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-04 DOI: 10.1039/D5NP00002E
Andrew V. Stachulski, Edwin A. Yates, Aleksandra Teriosina, Lesley Hoyles and Simon McArthur

Covering up to 2025.

Plant-derived polyphenols of various chemical classes are widely distributed in dietary substances, e.g. fruits, nuts, vegetables and teas. Such phenolic derivatives are natural antioxidants and have been linked with numerous health benefits, notably anti-cancer and anti-inflammatory properties. Additionally, they may behave as mild estrogens, as in the case of genistein. However, there has often been no clear correlation between in vitro properties, as measured in cell lines for instance, and in vivo performance. Moreover, it is not always clear what the true active species might be, as most phenols are readily subject to phase II metabolism, generating predominantly glucuronides and sulfates. In this highlight, we seek to address the question of whether dietary substance metabolites, especially glucuronides, which have been more widely studied, do indeed possess distinct activities in their own right compared to their parent substances. In most cases this will refer to enzyme inhibition and/or interaction with cell lines. General observations concerning glucuronidation are provided, accompanied by practical comments concerning the synthesis of glucuronides, which are not always available or marketed in useful quantities. The main structural classes of natural polyphenols are introduced, with comments including synthetic details and biological properties for important members of each class.

覆盖到2025年。各种化学类别的植物源性多酚广泛分布于膳食物质中,例如水果、坚果、蔬菜和茶。这些酚类衍生物是天然的抗氧化剂,具有许多健康益处,尤其是抗癌和抗炎特性。此外,它们可能表现为温和的雌激素,就像染料木素一样。然而,通常在体外特性(例如在细胞系中测量)与体内性能之间没有明确的相关性。此外,真正的活性物质可能是什么并不总是很清楚,因为大多数酚很容易受到第二阶段代谢的影响,主要产生葡萄糖醛酸盐和硫酸盐。在这篇重点文章中,我们试图解决膳食物质代谢物,特别是葡萄糖醛酸盐,已经被广泛研究的问题,是否确实具有与其母体物质相比的独特活性。在大多数情况下,这将涉及酶抑制和/或与细胞系的相互作用。提供了关于葡萄糖醛酸化的一般观察结果,并附有关于葡萄糖醛酸酯合成的实际评论,葡萄糖醛酸酯并不总是可用或销售的有用数量。介绍了天然多酚的主要结构类别,并对每一类重要成员的合成细节和生物学特性进行了评述。
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引用次数: 0
Unpacking policy developments in marine natural product research: a scientist's guide to DSI and BBNJ 海洋天然产品研究的政策发展:DSI和BBNJ的科学家指南。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-17 DOI: 10.1039/d4np00070f
Federica Casolari , Amelia Westmoreland , Thomas Vanagt , Marcel Jaspars
Covering: 2014 up to February 2025
Since the Nagoya Protocol came into force in 2014, scientists working with genetic resources have integrated compliance with Access and Benefit-Sharing (ABS) legislation at international and national levels into their research practices. However, two key gaps left by the Nagoya Protocol are being addressed, introducing new obligations for marine natural product scientists: under the auspices of the Convention on Biological Diversity (CBD), a compromise agreement was reached in November 2024 that regulates the use of Digital Sequence Information (DSI) on Genetic Resources. Within the next few years, the 2023 Biodiversity Beyond National Jurisdiction (BBNJ) Agreement is expected to take effect. This treaty covers the access to and use of marine biodiversity of areas beyond national jurisdiction for research and development. In a time when genetic research and marine biodiversity are key to scientific advancement, these evolving policies affect how genetic information is stored, shared, and used, raising emerging questions for the scientific community about their direct impact and the complexities of compliance. Despite continuous developments and scientific community involvement, there remains a notable gap in communication between policy changes and their accessible dissemination to researchers. Addressing this gap is crucial for the continuation of research and the effective use of relevant resources. The main goal of this viewpoint article is to provide a concise guide to recent policy developments relevant to natural product researchers that should be incorporated and harmonized into ongoing scientific activities.
自2014年《名古屋议定书》生效以来,从事遗传资源工作的科学家已将遵守国际和国家层面的获取和惠益分享立法纳入其研究实践。然而,《名古屋议定书》留下的两个关键空白正在得到解决,为海洋天然产品科学家引入了新的义务:在《生物多样性公约》(CBD)的主持下,于2024年11月达成了一项妥协协议,规范了遗传资源数字序列信息(DSI)的使用。预计在未来几年内,《2023年国家管辖范围外生物多样性协定》将生效。该条约涵盖了为研究和发展而获取和利用国家管辖范围以外地区的海洋生物多样性。在遗传研究和海洋生物多样性是科学进步的关键之时,这些不断演变的政策影响着遗传信息的存储、共享和使用方式,为科学界提出了有关其直接影响和合规复杂性的新问题。尽管不断发展和科学界的参与,在政策变化和向研究人员传播政策变化之间的沟通仍然存在显著的差距。解决这一差距对于继续进行研究和有效利用有关资源至关重要。这篇观点文章的主要目的是为与天然产物研究人员有关的近期政策发展提供一个简明的指南,这些政策发展应该被纳入和协调到正在进行的科学活动中。
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引用次数: 0
Intramolecular cycloaddition of nitrones in total synthesis of natural products 天然产物全合成中氮酮的分子内环加成。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-17 DOI: 10.1039/d4np00062e
Satoshi Yokoshima
Covering 2015 to 2024
Cycloaddition of nitrones with alkenes forms isoxazolidines, which are five-membered heterocycles containing nitrogen and oxygen atoms. This transformation functionalizes alkenes by forming C–C and C–O bonds. The N–O bond in the resultant isoxazolidines is easily cleaved. Additionally, when the cycloaddition is carried out intramolecularly, the regioselectivity of the reaction is influenced by the tether connecting the nitrone and alkene and can differ from the selectivity governed by frontier molecular orbital interaction. These features make the intramolecular cycloaddition of nitrones attractive in the synthesis of complex molecules. In this review, we discuss the intramolecular cycloaddition of nitrones used in the total synthesis of natural products.
从2015年到2024年,氮酮与烯烃的环加成形成异恶唑烷,这是一种含有氮和氧原子的五元杂环。这种转化通过形成C-C键和C-O键使烯烃功能化。合成的异恶唑烷中的N-O键很容易断裂。此外,当环加成在分子内进行时,反应的区域选择性受到连接硝基酮和烯烃的系链的影响,可能不同于由前沿分子轨道相互作用控制的选择性。这些特征使得分子内硝基环加成在复杂分子的合成中具有吸引力。本文综述了天然产物全合成中的分子内环加成反应。
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引用次数: 0
Modulators of the ubiquitin–proteasome system from natural products: chemical structures and their potential for drug discovery 天然产物中泛素-蛋白酶体系统的调节剂:化学结构及其药物发现的潜力。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-17 DOI: 10.1039/d5np00004a
Yuki Hitora , Sachiko Tsukamoto
Covering: up to 2024
The ubiquitin–proteasome system (UPS) plays a key role in regulating intracellular protein degradation and maintaining cellular homeostasis. Within the UPS, target proteins are polyubiquitinated through sequential reactions catalyzed by ubiquitination-related enzymes. These ubiquitinated proteins are then recognized and degraded by the 26S proteasome. Deubiquitinating enzymes cleave the formed polyubiquitin chains and regulate protein degradation, thereby contributing to precise regulation of the system. Dysregulation of the UPS is associated with cancer, immune disorders, and neurodegenerative diseases, making it a potential target for drug discovery. To date, a variety of natural products that target the UPS have been discovered and used in pharmaceutical development, and these compounds have provided important insights into the molecular mechanisms of UPS regulation. This review describes natural products that inhibit protein degradation in the UPS and activate protein degradation mediated by the 20S proteasome, thus clarifying their mechanisms of action and exploring their potential applications as therapeutic agents.
泛素-蛋白酶体系统(ubiquitin-proteasome system, UPS)在调节细胞内蛋白降解和维持细胞稳态中起着关键作用。在UPS中,目标蛋白通过泛素化相关酶催化的序列反应被多泛素化。这些泛素化蛋白随后被26S蛋白酶体识别和降解。去泛素化酶切割形成的多泛素链并调节蛋白质降解,从而有助于系统的精确调节。UPS的失调与癌症、免疫紊乱和神经退行性疾病有关,使其成为药物发现的潜在靶点。迄今为止,各种针对UPS的天然产物已经被发现并用于药物开发,这些化合物为UPS调节的分子机制提供了重要的见解。本文综述了抑制UPS蛋白降解和激活20S蛋白酶体介导的蛋白降解的天然产物,从而阐明了它们的作用机制,并探索了它们作为治疗药物的潜在应用前景。
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引用次数: 0
Recent advances in the chemistry and biology of plant oxylipin hormones 植物氧脂素激素的化学和生物学研究进展。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-17 DOI: 10.1039/d5np00006h
Yuho Nishizato , Taichi Okumura , Kotaro Matsumoto , Minoru Ueda
Jasmonates, including jasmonic acid (JA) and its derivatives, are lipid-based signaling molecules critical for plant growth, development, and defense. Among these, jasmonoyl-l-isoleucine (JA-Ile) has been identified as a bioactive plant hormone that mediates various physiological responses. JA-Ile functions in planta as a ‘molecular glue’ in protein–protein associations to induce the defense-related gene expression for plant–pathogen and plant–insect communications, and it affects many aspects of plant development and stress responses. This review explores the historical journey of jasmonate research, emphasizing the discovery of JA-Ile, its biosynthesis, function as a molecular glue, and the ligand–receptor co-evolutional aspect. The elucidation of the SCFCOI1-JAZ receptor complex and the crystallization of this co-receptor system marked significant advancements in understanding the chemical background of jasmonate biology. This review focuses on the advances in the chemistry and biology of jasmonate bioscience in the past two decades.
茉莉酸盐,包括茉莉酸(JA)及其衍生物,是基于脂质的信号分子,对植物生长、发育和防御至关重要。其中,茉莉异亮氨酸(JA-Ile)是一种具有生物活性的植物激素,可介导多种生理反应。JA-Ile在植物中作为蛋白-蛋白结合的“分子胶”,诱导植物-病原体和植物-昆虫交流的防御相关基因表达,并影响植物发育和胁迫反应的许多方面。本文综述了茉莉酸盐研究的历史历程,重点介绍了JA-Ile的发现、其生物合成、分子胶的功能以及配体-受体的共同进化等方面。SCFCOI1-JAZ受体复合物的阐明和该共受体系统的结晶标志着对茉莉酸生物学化学背景的理解取得了重大进展。本文综述了近二十年来茉莉酸盐生物科学在化学和生物学方面的研究进展。
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引用次数: 0
The bisintercalator family of nonribosomal peptides: structural diversity and biosynthetic mechanism 非核糖体肽双插层体家族:结构多样性和生物合成机制。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-17 DOI: 10.1039/d5np00003c
Xinjie Shi
Covering: up to February 2025
Among the numerous bioactive microbial natural products, a subset of nonribosomal peptides derived from actinobacteria is characterized by their C2-symmetric macrocyclic scaffolds and referred to as bisintercalators due to their ability to bisintercalate into DNA molecules. This family of compounds exhibits excellent antimicrobial, antitumor and antiviral properties, making them promising candidates for drug development. New members of the bisintercalator family continue to be discovered, and significant advancement has been made in understanding their biosynthesis over the past two decades. These efforts have established the general biosynthetic pathways of bisintercalators, although some chemically intriguing enzymatic transformations remain to be fully elucidated. This review summarizes the sources and chemical structures of known bisintercalators, briefly discussing their bioactivities, and then highlights the biochemical reactions involved in assembling their sophisticated macrocyclic scaffolds.
在众多具有生物活性的微生物天然产物中,来源于放线菌的非核糖体肽的一个子集以其c2对称的大环支架为特征,由于其双插入DNA分子的能力而被称为双插子。该家族化合物具有优异的抗菌、抗肿瘤和抗病毒特性,使其成为药物开发的有希望的候选者。双插层化合物家族的新成员不断被发现,并且在过去二十年中对其生物合成的理解取得了重大进展。这些努力已经建立了双插层剂的一般生物合成途径,尽管一些化学上有趣的酶转化仍有待充分阐明。本文综述了已知双插入物的来源和化学结构,简要讨论了它们的生物活性,并重点介绍了组装它们的复杂大环支架所涉及的生化反应。
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引用次数: 0
Unlocking marine treasures: isolation and mining strategies of natural products from sponge-associated bacteria† 解锁海洋宝藏:从海绵相关细菌中分离和开采天然产物的策略。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-17 DOI: 10.1039/d5np00013k
Jeong-A. Kim , Si-sun Choi , Jae Kyu Lim , Eung-Soo Kim
Covering: 2019 to early 2025
Marine sponges form unique ecosystems through symbiosis with diverse microbial communities, producing natural products including bioactive compounds. This review comprehensively addresses the key steps in the discovery of natural products from sponge-associated microorganisms, encompassing microbial isolation and cultivation, compound identification, and characterisation. Various cultivation methods, such as floating filter cultivation, microcapsule-based cultivation, and in situ systems, are examined to highlight their applications and strategies for overcoming limitations of conventional approaches. Additionally, the integration of genome-based methodologies and compound screening is explored to enhance the discovery of novel bioactive substances and establish a sustainable platform for natural product research. This review provides insights into the latest trends in sponge-associated microbial research and offers practical perspectives for expanding the utilization of marine biological resources.
海洋海绵通过与不同微生物群落的共生形成独特的生态系统,产生包括生物活性化合物在内的天然产物。本文综述了从海绵相关微生物中发现天然产物的关键步骤,包括微生物分离和培养、化合物鉴定和表征。各种培养方法,如浮动过滤培养,微胶囊为基础的培养,并在原位系统进行了审查,以突出其应用和策略,以克服传统方法的局限性。此外,我们还探索了基于基因组的方法和化合物筛选的整合,以加强新的生物活性物质的发现,并建立一个可持续的天然产物研究平台。本文综述了海绵相关微生物研究的最新动态,为扩大海洋生物资源的利用提供了实践展望。
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引用次数: 0
Configurational assignments of type-I polyketide synthase (PKS)-derived natural products based on spectroscopic and chemical analysis: methodologies and case studies 基于光谱和化学分析的i型聚酮合成酶(PKS)衍生天然产物的构型分配:方法和案例研究。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-17 DOI: 10.1039/d4np00061g
Jinsheng Cui , Prima F. Hillman , Geum Jin Kim , Thinh T. M. Bui , Kyuho Moon , Sang-Jip Nam , Hyukjae Choi , Dong-Chan Oh
Covering: 1992 to 2024
Type-I polyketide synthase (PKS)-derived metabolites are structurally diverse bioactive natural products containing multiple stereogenic centres. This review focuses on the configurational analysis of type-I PKS-derived natural products, emphasizing the methodologies and challenges associated with determining their stereochemistry due to their complex structures with multiple chiral centres. Key strategies include J-based configuration analysis (JBCA), chemical derivatizations with chiral reagents, degradation methods, NMR spectroscopic analysis, and the exploitation of chiroptical properties. Case studies demonstrate the practical applications of these methods in elucidating the stereochemistry of type-I polyketide natural products.
i型聚酮合成酶(PKS)衍生的代谢物是结构多样的生物活性天然产物,含有多个立体中心。本文综述了1型pks衍生的天然产物的构型分析,强调了由于其具有多个手性中心的复杂结构而确定其立体化学的方法和挑战。关键策略包括基于j的构型分析(JBCA)、手性试剂的化学衍生化、降解方法、核磁共振光谱分析和手性特性的开发。实例研究证明了这些方法在阐明i型聚酮天然产物立体化学中的实际应用。
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引用次数: 0
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Natural Product Reports
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