首页 > 最新文献

ChemistryOpen最新文献

英文 中文
Green Synthesis of ZnO Nanoparticles From Spirulina platensis: Antimicrobial and Cytotoxic Evaluation With Molecular Docking Studies. 绿色合成铂螺旋藻氧化锌纳米颗粒:基于分子对接研究的抗菌和细胞毒性评价
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-09 DOI: 10.1002/open.202500515
Muhammad Rizwan, Izaz Khan, Syed Sikandar Shah, Amir Hamza Khan, Abdurahman Hajinur Hirad, Saira Naz, Arshad Farid, Taimoor Khan, Said Hassan

Zinc oxide nanoparticles (ZnO NPs) have drawn some attention due to its antimicrobial properties and potential for their usage in biomedicine. ZnO NPs were synthesized using algal biomass filtrate, characterized subsequently, and the antimicrobial, antibiofilm, and cytotoxic activities of the ZnO NPs were evaluated. The synthesized ZnO NPs were characterized with fourier transform infrared, X-ray Diffraction, scanning electron microscopic, and transmission electron microscopy to analyze their morphological and compositional properties. Agar well diffusion, time-kill assays and antibiofilm experiments were conducted to assess antibacterial efficacy, while Artemia salina nauplii were used to evaluate cytotoxicity. It was found that ZnO NPs had hexagonal wurtzite crystal structure, uniform nanoscale morphology ranging 20-90 nm, and high phase purity. ZnO NPs exhibited potent antibacterial activity, further confirmed by molecular docking analysis. Strong antibiofilm efficacy, reducing biofilm biomass by up to 95%. Exceptional results were shown by wet lab and docking validation. The PBP2a protein of S. aureus showed a binding score of -7.7, indicating strong inhibition by the ZnO NPs. These nanoparticles exhibit a dose-dependent response, where minimal toxicity was observed at lower concentrations. This study highlights the potential of algae-mediated ZnO NPs as a green, sustainable antimicrobial platform that may mitigate the microbial resistance problem.

氧化锌纳米颗粒(ZnO NPs)因其抗菌性能和在生物医学领域的潜在应用而受到广泛关注。利用藻类生物质滤液合成ZnO NPs,对其进行了表征,并对其抑菌活性、抗生物膜活性和细胞毒活性进行了评价。采用傅里叶变换红外、x射线衍射、扫描电镜和透射电镜对合成的ZnO NPs进行了表征,分析了其形貌和成分性质。采用琼脂孔扩散法、时间杀伤法和抗菌膜法评价其抗菌效果,采用褐藻蒿(Artemia salina nauplii)评价细胞毒性。结果表明,ZnO纳米粒子具有六方纤锌矿晶体结构,纳米形貌均匀,粒径在20 ~ 90 nm之间,相纯度较高。氧化锌NPs具有较强的抗菌活性,分子对接分析进一步证实了这一点。抗生物膜效果强,可减少生物膜生物量达95%。湿实验室和对接验证显示了优异的结果。金黄色葡萄球菌PBP2a蛋白的结合评分为-7.7,表明氧化锌NPs对金黄色葡萄球菌的抑制作用较强。这些纳米颗粒表现出剂量依赖性反应,在较低浓度下观察到最小的毒性。这项研究强调了藻类介导的ZnO NPs作为一种绿色、可持续的抗菌平台的潜力,可以缓解微生物耐药性问题。
{"title":"Green Synthesis of ZnO Nanoparticles From Spirulina platensis: Antimicrobial and Cytotoxic Evaluation With Molecular Docking Studies.","authors":"Muhammad Rizwan, Izaz Khan, Syed Sikandar Shah, Amir Hamza Khan, Abdurahman Hajinur Hirad, Saira Naz, Arshad Farid, Taimoor Khan, Said Hassan","doi":"10.1002/open.202500515","DOIUrl":"https://doi.org/10.1002/open.202500515","url":null,"abstract":"<p><p>Zinc oxide nanoparticles (ZnO NPs) have drawn some attention due to its antimicrobial properties and potential for their usage in biomedicine. ZnO NPs were synthesized using algal biomass filtrate, characterized subsequently, and the antimicrobial, antibiofilm, and cytotoxic activities of the ZnO NPs were evaluated. The synthesized ZnO NPs were characterized with fourier transform infrared, X-ray Diffraction, scanning electron microscopic, and transmission electron microscopy to analyze their morphological and compositional properties. Agar well diffusion, time-kill assays and antibiofilm experiments were conducted to assess antibacterial efficacy, while Artemia salina nauplii were used to evaluate cytotoxicity. It was found that ZnO NPs had hexagonal wurtzite crystal structure, uniform nanoscale morphology ranging 20-90 nm, and high phase purity. ZnO NPs exhibited potent antibacterial activity, further confirmed by molecular docking analysis. Strong antibiofilm efficacy, reducing biofilm biomass by up to 95%. Exceptional results were shown by wet lab and docking validation. The PBP2a protein of S. aureus showed a binding score of -7.7, indicating strong inhibition by the ZnO NPs. These nanoparticles exhibit a dose-dependent response, where minimal toxicity was observed at lower concentrations. This study highlights the potential of algae-mediated ZnO NPs as a green, sustainable antimicrobial platform that may mitigate the microbial resistance problem.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500515"},"PeriodicalIF":3.1,"publicationDate":"2025-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145707628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Efficient One-Pot Synthesis of Benzothiazole Compounds From Vinamidinium Salts. 用Vinamidinium盐一锅法高效合成苯并噻唑类化合物。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-06 DOI: 10.1002/open.202500540
Zeinab Khosravi, Abdolmohammad Mehranpour, Mohammad Reza Mohammadizadeh, Genta Kojya, Satoru Arimitsuc

In this study, the condensation reaction between vinamidinium salts and Z-2-hydrazineylidene-3-methyl-2,3-dihydrobenzo[d]thiazole is described for the synthesis of 1,3-bis((3-methylbenzo[d]thiazol-2(3H)-ylidene)hydrazineylidene)propan-2-ol (BBTA) or 1-((1Z,3E)-1-(dimethylamino)-3-(((Z)-3-methylbenzo[d]thiazol-2(3H)-ylidene)hydrazineylidene)prop-1-en-2-yl)pyridin-1-ium (DMBT). A noteworthy aspect of the synthesis of these derivatives is that the structure of the vinamidinium salt acts as the determining factor for the type of product formed. Specifically, phenyl-substituted vinamidinium salts predominantly lead to the formation of symmetric BBTA derivatives, whereas pyridinium-based vinamidinium salts favor the production of asymmetric DMBT compounds. The reaction was carried out in the presence of triethylamine as the base and acetonitrile as the solvent under catalyst-free conditions. The structure of the new products was confirmed based on their spectral data, including 1H NMR, 13C NMR, IR, mass spectrometry, high-resolution mass spectrometry and X-ray analysis.

本研究描述了vinamidinium盐与Z-2-苄基-3-甲基-2,3-二氢苯并[d]噻唑的缩合反应,合成了1,3-双((3-甲基苯并[d]噻唑-2(3H)-乙基)肼基)丙-2-醇(BBTA)或1-((1Z,3E)-1-(二甲氨基)-3-((Z)-3-甲基苯并[d]噻唑-2(3H)-乙基)肼基)丙-1-烯-2-基)吡啶-1-ium (DMBT)。合成这些衍生物的一个值得注意的方面是,vinamidinium盐的结构是所形成产品类型的决定因素。具体来说,苯基取代的vinamidinium盐主要导致对称BBTA衍生物的形成,而吡啶基vinamidinium盐则有利于不对称DMBT化合物的产生。在无催化剂条件下,以三乙胺为碱,乙腈为溶剂进行反应。根据其光谱数据,包括1H NMR, 13C NMR, IR,质谱,高分辨率质谱和x射线分析,确定了新产品的结构。
{"title":"Efficient One-Pot Synthesis of Benzothiazole Compounds From Vinamidinium Salts.","authors":"Zeinab Khosravi, Abdolmohammad Mehranpour, Mohammad Reza Mohammadizadeh, Genta Kojya, Satoru Arimitsuc","doi":"10.1002/open.202500540","DOIUrl":"https://doi.org/10.1002/open.202500540","url":null,"abstract":"<p><p>In this study, the condensation reaction between vinamidinium salts and Z-2-hydrazineylidene-3-methyl-2,3-dihydrobenzo[d]thiazole is described for the synthesis of 1,3-bis((3-methylbenzo[d]thiazol-2(3H)-ylidene)hydrazineylidene)propan-2-ol (BBTA) or 1-((1Z,3E)-1-(dimethylamino)-3-(((Z)-3-methylbenzo[d]thiazol-2(3H)-ylidene)hydrazineylidene)prop-1-en-2-yl)pyridin-1-ium (DMBT). A noteworthy aspect of the synthesis of these derivatives is that the structure of the vinamidinium salt acts as the determining factor for the type of product formed. Specifically, phenyl-substituted vinamidinium salts predominantly lead to the formation of symmetric BBTA derivatives, whereas pyridinium-based vinamidinium salts favor the production of asymmetric DMBT compounds. The reaction was carried out in the presence of triethylamine as the base and acetonitrile as the solvent under catalyst-free conditions. The structure of the new products was confirmed based on their spectral data, including <sup>1</sup>H NMR, <sup>13</sup>C NMR, IR, mass spectrometry, high-resolution mass spectrometry and X-ray analysis.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500540"},"PeriodicalIF":3.1,"publicationDate":"2025-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145687022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impact of Al3+ Concentration on Montmorillonite Sedimentation: Insights Into Particle Size Behavior. Al3+浓度对蒙脱土沉降的影响:粒度行为的洞察。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-03 DOI: 10.1002/open.202500446
Hanyu Zhao, Lijun Liu, Xue Yuan, Qingtao Pang, Lei Yao, Bo Gao, Yihong Li, Liang Han, Yizhe Yang, Wei Yu, Zhen Li, Yuexian Yu, Jinzhou Qu

Particle size is crucial for sedimentation processes. However, there is limited research on how varying particle sizes influence the sedimentation of fine-grained particles. This study examined the aggregation behavior of two types of montmorillonite particles with different sizes under different concentrations of Al3+. The findings indicated that the sample of fine particles exhibited a more rapid reduction in turbidity and a greater increase in the absolute value of surface potential across various Al3+ concentrations. Despite this, both samples achieved comparable final supernatant turbidity, sediment layer height, and residual particle size, suggesting that the enhancing effect of Al3+ on the sedimentation of fine-grained montmorillonite is limited by particle size. Different concentrations of Al3+ result in the formation of hydroxyl compounds and hydroxides that adsorb onto mineral surfaces, promoting the sedimentation of finer-grained montmorillonite in the sample of fine particles. DLVO theory confirmed that the electrical double layers of the samples of coarse and fine particles gradually diminished under the influence of Al3+, effectively enhancing the aggregation of montmorillonite. Furthermore, thermodynamic analysis suggested that particles smaller than 500 nm do not settle further, even with the addition of aluminum ions.

粒度对沉降过程至关重要。然而,关于不同粒径对细粒颗粒沉降的影响的研究有限。研究了两种不同粒径蒙脱土颗粒在不同Al3+浓度下的聚集行为。结果表明,在不同浓度的Al3+中,细颗粒样品的浊度降低更快,表面电位绝对值增加更大。尽管如此,两种样品的最终上清浊度、沉积层高度和残余粒度相当,这表明Al3+对细粒蒙脱石沉积的增强作用受到粒度的限制。不同浓度的Al3+导致羟基化合物和氢氧化物的形成,这些氢氧化物吸附在矿物表面,促进细粒蒙脱土在细颗粒样品中的沉积。DLVO理论证实,在Al3+的影响下,粗颗粒和细颗粒样品的双电层逐渐减少,有效地增强了蒙脱土的聚集性。此外,热力学分析表明,即使添加铝离子,小于500 nm的颗粒也不会进一步沉降。
{"title":"Impact of Al<sup>3+</sup> Concentration on Montmorillonite Sedimentation: Insights Into Particle Size Behavior.","authors":"Hanyu Zhao, Lijun Liu, Xue Yuan, Qingtao Pang, Lei Yao, Bo Gao, Yihong Li, Liang Han, Yizhe Yang, Wei Yu, Zhen Li, Yuexian Yu, Jinzhou Qu","doi":"10.1002/open.202500446","DOIUrl":"https://doi.org/10.1002/open.202500446","url":null,"abstract":"<p><p>Particle size is crucial for sedimentation processes. However, there is limited research on how varying particle sizes influence the sedimentation of fine-grained particles. This study examined the aggregation behavior of two types of montmorillonite particles with different sizes under different concentrations of Al<sup>3+</sup>. The findings indicated that the sample of fine particles exhibited a more rapid reduction in turbidity and a greater increase in the absolute value of surface potential across various Al<sup>3+</sup> concentrations. Despite this, both samples achieved comparable final supernatant turbidity, sediment layer height, and residual particle size, suggesting that the enhancing effect of Al<sup>3+</sup> on the sedimentation of fine-grained montmorillonite is limited by particle size. Different concentrations of Al<sup>3+</sup> result in the formation of hydroxyl compounds and hydroxides that adsorb onto mineral surfaces, promoting the sedimentation of finer-grained montmorillonite in the sample of fine particles. DLVO theory confirmed that the electrical double layers of the samples of coarse and fine particles gradually diminished under the influence of Al<sup>3+</sup>, effectively enhancing the aggregation of montmorillonite. Furthermore, thermodynamic analysis suggested that particles smaller than 500 nm do not settle further, even with the addition of aluminum ions.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500446"},"PeriodicalIF":3.1,"publicationDate":"2025-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145660524","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multiple-Use Microplate Assay for Submicromolar Ultra High-Throughput Separation of Amines Based on their Degree of Substitution. 基于取代度的亚微摩尔超高通量分离胺的多用途微孔板试验。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-01 DOI: 10.1002/open.202500491
Panna Vezse, Tünde Tóth, Péter Huszthy, Ádám Golcs

Small-molecule amines, typically studied in their more stable and water-soluble protonated forms, are of central importance in drug discovery. Their structural diversification often relies on N-alkylation, yielding mixtures of analogs with varying degrees of substitution-posing a key challenge for purification. While advanced chromatographic techniques exist, no high-throughput, broadly applicable alternative has emerged that aligns with the capabilities of automated synthesis. Here, a reusable microplate-based assay enabling ultra-high-throughput, parallel separation of protonated amines-including alkyl-, aryl-, and aralkylamines-at submicromolar levels is reported. The method exploits a covalently immobilized tris(pyridino)-crown ether selector, which forms reversible host-guest complexes by H-bonds, which differ with the degree of N-substitution. This supramolecular recognition strategy eliminates the need for compound-specific method development, derivatization, or preparative-scale quantities. In addition, the present article introduces a generally applicable surface-functionalization protocol for customizing standard commercial microplates into molecular recognition platforms. The present approach resolves key limitations of current separation technologies-such as high energy use, low integration with liquid-handling systems, inevitable sample dilution, and time-intensive workflows-offering a transformative tool for rapid and efficient purification directly compatible with modern synthesis pipelines.

小分子胺通常以其更稳定和水溶性的质子化形式进行研究,在药物发现中具有核心重要性。它们的结构多样化通常依赖于n-烷基化,产生具有不同程度取代的类似物混合物,这对纯化提出了关键挑战。虽然存在先进的色谱技术,但没有高通量,广泛适用的替代方案出现,与自动合成的能力相一致。本文报道了一种可重复使用的基于微孔板的检测方法,可以在亚微摩尔水平上对质子化胺(包括烷基、芳基和芳烷基胺)进行超高通量平行分离。该方法利用共价固定的三(吡啶)冠醚选择器,通过不同n取代度的氢键形成可逆的主客体配合物。这种超分子识别策略消除了对化合物特定方法开发,衍生化或制备规模数量的需要。此外,本文介绍了一种普遍适用的表面功能化协议,用于将标准商业微孔板定制为分子识别平台。目前的方法解决了当前分离技术的关键限制-例如高能耗,与液体处理系统的低集成,不可避免的样品稀释和时间密集的工作流程-提供了一种与现代合成管道直接兼容的快速高效纯化的变革性工具。
{"title":"Multiple-Use Microplate Assay for Submicromolar Ultra High-Throughput Separation of Amines Based on their Degree of Substitution.","authors":"Panna Vezse, Tünde Tóth, Péter Huszthy, Ádám Golcs","doi":"10.1002/open.202500491","DOIUrl":"https://doi.org/10.1002/open.202500491","url":null,"abstract":"<p><p>Small-molecule amines, typically studied in their more stable and water-soluble protonated forms, are of central importance in drug discovery. Their structural diversification often relies on N-alkylation, yielding mixtures of analogs with varying degrees of substitution-posing a key challenge for purification. While advanced chromatographic techniques exist, no high-throughput, broadly applicable alternative has emerged that aligns with the capabilities of automated synthesis. Here, a reusable microplate-based assay enabling ultra-high-throughput, parallel separation of protonated amines-including alkyl-, aryl-, and aralkylamines-at submicromolar levels is reported. The method exploits a covalently immobilized tris(pyridino)-crown ether selector, which forms reversible host-guest complexes by H-bonds, which differ with the degree of N-substitution. This supramolecular recognition strategy eliminates the need for compound-specific method development, derivatization, or preparative-scale quantities. In addition, the present article introduces a generally applicable surface-functionalization protocol for customizing standard commercial microplates into molecular recognition platforms. The present approach resolves key limitations of current separation technologies-such as high energy use, low integration with liquid-handling systems, inevitable sample dilution, and time-intensive workflows-offering a transformative tool for rapid and efficient purification directly compatible with modern synthesis pipelines.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500491"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145653869","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Computational Study on Potentially Active Antibacterial Compounds in Secondary Metabolites of Extremophilic Microorganisms. 嗜极微生物次生代谢物中潜在活性抗菌化合物的计算研究。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-28 DOI: 10.1002/open.202500460
Dilong Li, Yanni Wang, Yinhuan Huang, Hui Zhou, Xiaoyun Xia, Wei Huang, Chaojie Wang

The density functional theory (DFT) method ωB97XD/6-311+G(2d, p) was employed to perform systematic theoretical calculations and comparative analyses on the geometric structures, spectroscopic properties, frontier molecular orbitals, and molecular electrostatic potentials of potential antibacterial compounds derived from 16-membered lactone ring-containing secondary metabolites of extremophiles, as well as midecamycin. The reactivity indices of these compounds were further investigated within the framework of conceptual DFT. Additionally, drug-likeness was evaluated using two independent pharmacokinetic prediction platforms, and molecular docking simulations were conducted to assess their binding affinities. The results indicate that the carboxyl hydrogen, hydroxyl hydrogen, and carbonyl oxygen atoms in these molecules exhibit relatively high reactivity. Compound 3 displays relatively high chemical reactivity, whereas compounds 6 and 9 demonstrate superior chemical stability combined with significant reactivity. Pharmacokinetic predictions reveal poor Caco-2 permeability for compounds 8 and 9, low therapeutic indices for compounds 2 and 3, and the highest metabolic stability in human liver microsomes for compound 7. Overall, compound 1 exhibits the highest structural and physicochemical similarity to midecamycin. Compound 1 was evaluated for molecular docking with the 50S ribosomal subunit from Streptomyces bacteria; the molecular docking results confirm its distinct binding affinity, despite a slightly higher binding energy. The molecular dynamics simulation results indicate that complex 1 exhibits a Gibbs free energy of -30.76 kJ/mol, further supporting its structural stability.

采用密度泛函理论(DFT)方法ωB97XD/6-311+G(2d, p),对极端微生物含16元内酯环次级代谢物和midecamycin衍生的潜在抗菌化合物的几何结构、光谱性质、前沿分子轨道和分子静电势进行了系统的理论计算和比较分析。在概念DFT的框架内进一步研究了这些化合物的反应性指数。此外,使用两个独立的药代动力学预测平台评估药物相似性,并进行分子对接模拟以评估其结合亲和力。结果表明,这些分子中的羧基氢、羟基氢和羰基氧原子表现出较高的反应活性。化合物3具有较高的化学活性,而化合物6和9具有较好的化学稳定性和显著的化学活性。药代动力学预测显示,化合物8和9的Caco-2渗透性较差,化合物2和3的治疗指标较低,化合物7在人肝微粒体中的代谢稳定性最高。总的来说,化合物1与米卡霉素在结构和物理化学上具有最高的相似性。评价化合物1与链霉菌50S核糖体亚基的分子对接;分子对接结果证实了其明显的结合亲和力,尽管结合能略高。分子动力学模拟结果表明,配合物1的吉布斯自由能为-30.76 kJ/mol,进一步支持了其结构的稳定性。
{"title":"Computational Study on Potentially Active Antibacterial Compounds in Secondary Metabolites of Extremophilic Microorganisms.","authors":"Dilong Li, Yanni Wang, Yinhuan Huang, Hui Zhou, Xiaoyun Xia, Wei Huang, Chaojie Wang","doi":"10.1002/open.202500460","DOIUrl":"https://doi.org/10.1002/open.202500460","url":null,"abstract":"<p><p>The density functional theory (DFT) method ωB97XD/6-311+G(2d, p) was employed to perform systematic theoretical calculations and comparative analyses on the geometric structures, spectroscopic properties, frontier molecular orbitals, and molecular electrostatic potentials of potential antibacterial compounds derived from 16-membered lactone ring-containing secondary metabolites of extremophiles, as well as midecamycin. The reactivity indices of these compounds were further investigated within the framework of conceptual DFT. Additionally, drug-likeness was evaluated using two independent pharmacokinetic prediction platforms, and molecular docking simulations were conducted to assess their binding affinities. The results indicate that the carboxyl hydrogen, hydroxyl hydrogen, and carbonyl oxygen atoms in these molecules exhibit relatively high reactivity. Compound 3 displays relatively high chemical reactivity, whereas compounds 6 and 9 demonstrate superior chemical stability combined with significant reactivity. Pharmacokinetic predictions reveal poor Caco-2 permeability for compounds 8 and 9, low therapeutic indices for compounds 2 and 3, and the highest metabolic stability in human liver microsomes for compound 7. Overall, compound 1 exhibits the highest structural and physicochemical similarity to midecamycin. Compound 1 was evaluated for molecular docking with the 50S ribosomal subunit from Streptomyces bacteria; the molecular docking results confirm its distinct binding affinity, despite a slightly higher binding energy. The molecular dynamics simulation results indicate that complex 1 exhibits a Gibbs free energy of -30.76 kJ/mol, further supporting its structural stability.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500460"},"PeriodicalIF":3.1,"publicationDate":"2025-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145630331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
2,3-Dichloro-5,6-Dicyano-1,4-Benzoquinone (DDQ)-Mediated CC Bond Formation: Redox Strategies from Stoichiometric to Catalytic Systems. 2,3-二氯-5,6-二氰-1,4-苯醌(DDQ)介导的C - C键形成:从化学计量到催化系统的氧化还原策略。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-27 DOI: 10.1002/open.202500568
Dohoon Cha, Sun-Joon Min

2,3-Dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) has long been recognized as a versatile organic oxidant that mediates diverse transformations through single-electron transfer, hydride abstraction, and redox cycling. Beyond its classical stoichiometric role in oxidation and dehydrogenation, DDQ now serves as an efficient catalyst for carbon-carbon bond formation across thermal, photochemical, and electrochemical domains. In stoichiometric reactions, DDQ enables benzylic and allylic CH activation to generate oxocarbenium or iminium intermediates that couple with a broad range of nucleophiles, facilitating alkylation, arylation, cyanation, and annulation processes. In catalytic systems, DDQ participates in redox cycles where the DDQ/DDQH2 couple is regenerated by oxidants such as O2, nitrites, or MnO2, offering mild and simple access to complex carbon frameworks. The scope further extends to asymmetric catalysis and radical-mediated cross-dehydrogenative coupling, providing sustainable routes to natural product-like scaffolds and biologically active molecules. This review highlights the progression of DDQ from a stoichiometric oxidant to a redox-active catalyst, emphasizing its growing utility in controlled, metal-free oxidative CC bond formation and its promise for next-generation sustainable synthesis.

2,3-二氯-5,6-二氰-1,4-苯醌(DDQ)一直被认为是一种多用途的有机氧化剂,它通过单电子转移、氢化物提取和氧化还原循环介导多种转化。除了在氧化和脱氢中的经典化学计量作用外,DDQ现在还可以作为热、光化学和电化学领域碳-碳键形成的有效催化剂。在化学计量反应中,DDQ使苯基和烯丙基C - H活化生成氧羰基或铝中间体,这些中间体与广泛的亲核试剂偶联,促进烷基化、芳基化、氰化和环化过程。在催化系统中,DDQ参与氧化还原循环,其中DDQ/DDQH2对被O2、亚硝酸盐或MnO2等氧化剂再生,为复杂的碳框架提供了温和而简单的途径。范围进一步扩展到不对称催化和自由基介导的交叉脱氢偶联,为天然产物样支架和生物活性分子提供可持续的途径。这篇综述强调了DDQ从化学计量氧化剂到氧化活性催化剂的进展,强调了它在受控、无金属氧化C - 5c键形成方面的日益增长的用途,以及它在下一代可持续合成方面的前景。
{"title":"2,3-Dichloro-5,6-Dicyano-1,4-Benzoquinone (DDQ)-Mediated CC Bond Formation: Redox Strategies from Stoichiometric to Catalytic Systems.","authors":"Dohoon Cha, Sun-Joon Min","doi":"10.1002/open.202500568","DOIUrl":"https://doi.org/10.1002/open.202500568","url":null,"abstract":"<p><p>2,3-Dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) has long been recognized as a versatile organic oxidant that mediates diverse transformations through single-electron transfer, hydride abstraction, and redox cycling. Beyond its classical stoichiometric role in oxidation and dehydrogenation, DDQ now serves as an efficient catalyst for carbon-carbon bond formation across thermal, photochemical, and electrochemical domains. In stoichiometric reactions, DDQ enables benzylic and allylic CH activation to generate oxocarbenium or iminium intermediates that couple with a broad range of nucleophiles, facilitating alkylation, arylation, cyanation, and annulation processes. In catalytic systems, DDQ participates in redox cycles where the DDQ/DDQH<sub>2</sub> couple is regenerated by oxidants such as O<sub>2</sub>, nitrites, or MnO<sub>2</sub>, offering mild and simple access to complex carbon frameworks. The scope further extends to asymmetric catalysis and radical-mediated cross-dehydrogenative coupling, providing sustainable routes to natural product-like scaffolds and biologically active molecules. This review highlights the progression of DDQ from a stoichiometric oxidant to a redox-active catalyst, emphasizing its growing utility in controlled, metal-free oxidative CC bond formation and its promise for next-generation sustainable synthesis.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500568"},"PeriodicalIF":3.1,"publicationDate":"2025-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145630375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Water Co-Adsorption in Ultrathin Films of Ionic Liquids on Pt(111). 离子液体在Pt(111)超薄膜上的水共吸附。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-26 DOI: 10.1002/open.202500571
Timo Talwar, Hans-Peter Steinrück, Florian Maier

The influence of pre-adsorbed water (D2O) on the growth, adsorption, orientation, and thermal behavior of two ionic liquids (ILs) on Pt(111) was studied within the SCILL (solid catalyst with ionic liquid layer) concept. Nonfunctionalized [C1C1Im][Tf2N] and nitrile-functionalized [C3CNC1Im][Tf2N] were deposited at ∼100 K onto clean Pt(111) or onto single-layer and multilayer crystalline (CI) or amorphous (ASW) D2O films and analyzed at various temperatures by angle-resolved X-ray photoelectron spectroscopy (ARXPS). On both clean and D2O-covered Pt(111), the ILs initially grow in a 2D layer-by-layer mode, forming a closed wetting layer at ≈ 0.5 ML IL coverage, followed by moderate 3D growth above 0.8-1.0 ML. At 100 K, the ILs partially displace D2O from the Pt surface, yielding co-adsorption structures where IL contacts Pt(111) directly and is also located in a second layer. [Tf2N]- anions adsorb in cis-configuration with oxygen atoms toward the surface, while the cations adopt mixed parallel and tilted orientations. Heating to 130 K induces rearrangement, increasing direct IL-Pt(111) contact by favoring parallel cation alignment. Co-adsorbed D2O remains but desorbs at ≈10 K lower temperature, indicating weaker binding to Pt. The similar interfacial behavior of both ILs shows that the nitrile group does not significantly influence adsorption geometry or thermal stability.

在SCILL(带离子液体层的固体催化剂)概念下,研究了预吸附水(D2O)对两种离子液体(ILs)在Pt(111)上的生长、吸附、取向和热行为的影响。将非功能化的[C1C1Im][Tf2N]和腈基功能化的[C3CNC1Im][Tf2N]在~ 100 K的温度下沉积在干净的Pt(111)或单层和多层晶(CI)或非晶(ASW) D2O薄膜上,并在不同温度下用角分辨x射线光电子能谱(ARXPS)进行分析。在清洁和d20覆盖的Pt(111)上,IL最初以二维逐层模式生长,在IL覆盖≈0.5 ML时形成封闭的润湿层,随后在0.8-1.0 ML以上适度的3D生长。在100 K时,IL从Pt表面部分取代D2O,形成共吸附结构,IL直接接触Pt(111),也位于第二层。[Tf2N]-阴离子与氧原子沿表面呈顺式吸附,阳离子呈平行和倾斜混合取向。加热至130 K诱导重排,通过有利于平行阳离子排列增加IL-Pt(111)的直接接触。在约10 K的低温下,共吸附的D2O仍然存在,但会解吸,表明与Pt的结合较弱。两种il的相似界面行为表明,腈基对吸附的几何形状和热稳定性没有显著影响。
{"title":"Water Co-Adsorption in Ultrathin Films of Ionic Liquids on Pt(111).","authors":"Timo Talwar, Hans-Peter Steinrück, Florian Maier","doi":"10.1002/open.202500571","DOIUrl":"https://doi.org/10.1002/open.202500571","url":null,"abstract":"<p><p>The influence of pre-adsorbed water (D<sub>2</sub>O) on the growth, adsorption, orientation, and thermal behavior of two ionic liquids (ILs) on Pt(111) was studied within the SCILL (solid catalyst with ionic liquid layer) concept. Nonfunctionalized [C<sub>1</sub>C<sub>1</sub>Im][Tf<sub>2</sub>N] and nitrile-functionalized [C<sub>3</sub>CNC<sub>1</sub>Im][Tf<sub>2</sub>N] were deposited at ∼100 K onto clean Pt(111) or onto single-layer and multilayer crystalline (CI) or amorphous (ASW) D<sub>2</sub>O films and analyzed at various temperatures by angle-resolved X-ray photoelectron spectroscopy (ARXPS). On both clean and D<sub>2</sub>O-covered Pt(111), the ILs initially grow in a 2D layer-by-layer mode, forming a closed wetting layer at ≈ 0.5 ML IL coverage, followed by moderate 3D growth above 0.8-1.0 ML. At 100 K, the ILs partially displace D<sub>2</sub>O from the Pt surface, yielding co-adsorption structures where IL contacts Pt(111) directly and is also located in a second layer. [Tf<sub>2</sub>N]<sup>-</sup> anions adsorb in cis-configuration with oxygen atoms toward the surface, while the cations adopt mixed parallel and tilted orientations. Heating to 130 K induces rearrangement, increasing direct IL-Pt(111) contact by favoring parallel cation alignment. Co-adsorbed D<sub>2</sub>O remains but desorbs at ≈10 K lower temperature, indicating weaker binding to Pt. The similar interfacial behavior of both ILs shows that the nitrile group does not significantly influence adsorption geometry or thermal stability.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500571"},"PeriodicalIF":3.1,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145602716","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthesis of Pyrido[2,3-d]Azolopyrimidinones: Design and Epidermal Growth Factor Receptor-Targeted Molecular Docking Toward Novel Anticancer Leads. 吡啶多[2,3-d]偶氮吡啶酮的合成:设计与表皮生长因子受体靶向抗癌先导分子对接。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-23 DOI: 10.1002/open.202500555
Sobhi M Gomha, Sami A Al-Hussain, Basant Farag, AbdElAziz A Nayl, Wesam Hussein, Abdelwahed R Sayed, Magdi E A Zaki

A new class of pyrido[2,3-d][1,2,4]triazolo[4,3-a]pyrimidinones and pyrido[2,3-d]thiazolo[3,2-a]pyrimidinones was synthesized by reacting 5-phenyl-2-thioxo-2,3-dihydropyrido[2,3-d]pyrimidin-4(1H)-one with hydrazonoyl halides and α-bromoketones via a Knoevenagel-cyclocondensation followed by heteroannulation. Structures were confirmed by elemental analysis and IR, 1H NMR, and MS spectroscopy. Cytotoxicity against HepG2 cells (MTT assay) revealed submicromolar activity for the most active analogs (IC50 0.72-0.95 µM), comparable to doxorubicin (0.65 µM). Structure-activity trends indicate that ester functionalities, coumarin incorporation, and electron-donating aryl substituents enhance potency. Molecular docking to the EGFR kinase domain showed strong predicted binding for the top analogs (scores -9.6 to -10.2 kcal mol-1 vs -8.7 kcal mol-1 for doxorubicin), highlighting key hydrogen-bond and hydrophobic contacts with Lys745, Asp837, Arg841, and Asp855. Docking results align with the in vitro data. In silico ADMET predictions suggest favorable drug-likeness, oral absorption, and non-mutagenic character. These findings position the reported pyridopyrimidine scaffolds as promising EGFR-targeted anticancer leads.

以5-苯基-2-硫氧基-2,3- 3-二氢吡啶[2,3- 3]嘧啶-4(1H)- 1与腙酰卤化物和α-溴酮为原料,经knoevenagel -环缩合后进行杂环反应,合成了一类新的吡啶[2,3- 3]三唑[4,3- A]嘧啶酮和吡啶[2,3- 3]噻唑[3,2- A]嘧啶酮。结构经元素分析、IR、1H NMR和MS谱确证。对HepG2细胞的细胞毒性(MTT试验)显示,最活跃的类似物(IC50为0.72-0.95µM)具有亚微摩尔活性,与阿霉素(0.65µM)相当。结构-活性趋势表明,酯功能、香豆素结合和提供电子的芳基取代基增强了效力。与EGFR激酶结构域的分子对接显示出与顶级类似物的强预测结合(评分为-9.6至-10.2 kcal mol-1,而阿霉素的评分为-8.7 kcal mol-1),突出了与Lys745、Asp837、Arg841和Asp855的关键氢键和疏水接触。对接结果与体外数据一致。在计算机ADMET预测显示有利的药物相似,口服吸收和非致突变性。这些发现将吡啶嘧啶支架定位为有希望的egfr靶向抗癌先导。
{"title":"Synthesis of Pyrido[2,3-d]Azolopyrimidinones: Design and Epidermal Growth Factor Receptor-Targeted Molecular Docking Toward Novel Anticancer Leads.","authors":"Sobhi M Gomha, Sami A Al-Hussain, Basant Farag, AbdElAziz A Nayl, Wesam Hussein, Abdelwahed R Sayed, Magdi E A Zaki","doi":"10.1002/open.202500555","DOIUrl":"https://doi.org/10.1002/open.202500555","url":null,"abstract":"<p><p>A new class of pyrido[2,3-d][1,2,4]triazolo[4,3-a]pyrimidinones and pyrido[2,3-d]thiazolo[3,2-a]pyrimidinones was synthesized by reacting 5-phenyl-2-thioxo-2,3-dihydropyrido[2,3-d]pyrimidin-4(1H)-one with hydrazonoyl halides and α-bromoketones via a Knoevenagel-cyclocondensation followed by heteroannulation. Structures were confirmed by elemental analysis and IR, <sup>1</sup>H NMR, and MS spectroscopy. Cytotoxicity against HepG2 cells (MTT assay) revealed submicromolar activity for the most active analogs (IC<sub>50</sub> 0.72-0.95 µM), comparable to doxorubicin (0.65 µM). Structure-activity trends indicate that ester functionalities, coumarin incorporation, and electron-donating aryl substituents enhance potency. Molecular docking to the EGFR kinase domain showed strong predicted binding for the top analogs (scores -9.6 to -10.2 kcal mol<sup>-1</sup> vs -8.7 kcal mol<sup>-1</sup> for doxorubicin), highlighting key hydrogen-bond and hydrophobic contacts with Lys745, Asp837, Arg841, and Asp855. Docking results align with the in vitro data. In silico ADMET predictions suggest favorable drug-likeness, oral absorption, and non-mutagenic character. These findings position the reported pyridopyrimidine scaffolds as promising EGFR-targeted anticancer leads.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500555"},"PeriodicalIF":3.1,"publicationDate":"2025-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145586111","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Abietic Acid Enhances the Sedative Activity of Diazepam: In vivo Approach along with Receptor Binding Affinity and Molecular Interaction with the GABAergic System. 枞酸增强地西泮的镇静活性:体内方法、受体结合亲和力和与gaba能系统的分子相互作用。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-23 DOI: 10.1002/open.202500397
Meher Afroz, Rubel Hasan, Mst Muslima Khatun, Mokammel Hossain Tito, Md Shadin, Ranjit Chakma, Mohammed Asiri, Faisal H Altemani, Abdullah H Altemani, Md Shimul Bhuia, Muhammad Torequl Islam

This study evaluated the sedative activity of abietic acid (AA) through a thiopental sodium (TS)-induced sleep model in mice. AA (5, 10, and 20 mg/kg) and diazepam (DZP) (2 mg/kg) were provided, followed by TS (20 mg/kg) after 30 min to induce sleep. Sleep latency and total sleeping time were documented over a 4 h period. Additionally, molecular docking studies were conducted to examine the interactions of AA with GABAA (Protein Data Bank: 6X3X) receptors, which hold two subunits of α1 and β2, alongside pharmacokinetic and toxicity assessments. The results indicated that AA significantly (p < 0.05) provided the fast onset of sleeping and extended sleeping time in a dose-dependent manner. The combination of AA (20 mg/kg) with DZP further enhanced sedation, yielding a prolonged sleep duration and a reduced sleep latency, indicating a synergistic effect. In addition, in silico analysis expressed that AA exhibited a strong binding affinity for GABAA receptors (-7.9 kcal/mol), comparable to DZP (-8.4 kcal/mol). Furthermore, AA demonstrated favorable pharmacokinetic properties and drug-likeness. Overall, these findings suggest that AA possesses potent sedative effects, likely mediated through interactions with the GABAergic system, warranting further investigation for its therapeutic potential in sleep disorders.

本研究通过硫喷妥钠(TS)诱导小鼠睡眠模型,评价了枞酸(AA)的镇静作用。给予AA(5、10、20 mg/kg)和地西泮(DZP) (2 mg/kg), 30 min后给予TS (20 mg/kg)诱导睡眠。睡眠潜伏期和总睡眠时间在4小时内被记录下来。此外,还进行了分子对接研究,以检测AA与GABAA (Protein Data Bank: 6X3X)受体的相互作用,GABAA受体含有α1和β2两个亚基,并进行了药代动力学和毒性评估。结果表明,AA (-7.9 kcal/mol)与DZP (-8.4 kcal/mol)相当。此外,AA表现出良好的药代动力学性质和药物相似性。总的来说,这些发现表明AA具有强大的镇静作用,可能通过与gaba能系统的相互作用介导,值得进一步研究其治疗睡眠障碍的潜力。
{"title":"Abietic Acid Enhances the Sedative Activity of Diazepam: In vivo Approach along with Receptor Binding Affinity and Molecular Interaction with the GABAergic System.","authors":"Meher Afroz, Rubel Hasan, Mst Muslima Khatun, Mokammel Hossain Tito, Md Shadin, Ranjit Chakma, Mohammed Asiri, Faisal H Altemani, Abdullah H Altemani, Md Shimul Bhuia, Muhammad Torequl Islam","doi":"10.1002/open.202500397","DOIUrl":"https://doi.org/10.1002/open.202500397","url":null,"abstract":"<p><p>This study evaluated the sedative activity of abietic acid (AA) through a thiopental sodium (TS)-induced sleep model in mice. AA (5, 10, and 20 mg/kg) and diazepam (DZP) (2 mg/kg) were provided, followed by TS (20 mg/kg) after 30 min to induce sleep. Sleep latency and total sleeping time were documented over a 4 h period. Additionally, molecular docking studies were conducted to examine the interactions of AA with GABA<sub>A</sub> (Protein Data Bank: 6X3X) receptors, which hold two subunits of α1 and β2, alongside pharmacokinetic and toxicity assessments. The results indicated that AA significantly (p < 0.05) provided the fast onset of sleeping and extended sleeping time in a dose-dependent manner. The combination of AA (20 mg/kg) with DZP further enhanced sedation, yielding a prolonged sleep duration and a reduced sleep latency, indicating a synergistic effect. In addition, in silico analysis expressed that AA exhibited a strong binding affinity for GABA<sub>A</sub> receptors (-7.9 kcal/mol), comparable to DZP (-8.4 kcal/mol). Furthermore, AA demonstrated favorable pharmacokinetic properties and drug-likeness. Overall, these findings suggest that AA possesses potent sedative effects, likely mediated through interactions with the GABAergic system, warranting further investigation for its therapeutic potential in sleep disorders.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500397"},"PeriodicalIF":3.1,"publicationDate":"2025-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145586050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Structural Basis of the Light-Switchable Interaction between an Azobenzene Side Chain in a Biosynthetic Protein and α-Cyclodextrin. 生物合成蛋白中偶氮苯侧链与α-环糊精光切换相互作用的结构基础。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-19 DOI: 10.1002/open.202500471
Andreas Eichinger, Peter Mayrhofer, Markus R Anneser, Leonie Jarzinka, Arne Skerra

Azobenzene derivatives, which show light-induced reversible trans↔cis isomerization, have gained increasing attention in the area of protein science. p-(Phenylazo)-L-phenylalanine (Pap) was recently employed to enable the light-controlled affinity purification of biosynthetic proteins as part of the Azo-tag. Specific supramolecular complex formation with immobilized α-cyclodextrin (α-CD) groups is mediated by the Pap side chain in its low-energy trans-configuration, whereas photoisomerization to the cis-state leads to immediate dissociation. Here, we describe the X-ray crystallographic analysis of super-folder green fluorescent protein (sfGFP) displaying Pap at amino acid position 39 on its surface in complex with α-CD. While this experimental structure generally confirms the mode of host-guest interaction predicted by molecular modeling, there are two unexpected observations: (i) the conically shaped α-CD binds with its narrow end toward the aminoacyl moiety of Pap, despite appearing sterically more demanding, and (ii) the azobenzene side chain shows a considerably twisted conformation of its two phenyl rings, which contrasts with the fully coplanar arrangement usually anticipated for unmodified azobenzene and its chemical derivatives. Thus, this crystal structure of the photoswitchable noncanonical amino acid Pap (also known as AzoF or AzoPhe) provides valuable insight for future molecular engineering endeavors to endow proteins with light-controllable functions.

偶氮苯衍生物表现出光诱导可逆反式↔顺式异构化,在蛋白质科学领域受到越来越多的关注。对(苯基偶氮)- l -苯丙氨酸(Pap)最近被用于生物合成蛋白的光控亲和纯化,作为偶氮标记的一部分。固定α-环糊精(α-CD)基团的特异超分子络合物的形成是由Pap侧链在低能反式构型中介导的,而光异构化到顺态会导致立即解离。本文描述了超级文件夹绿色荧光蛋白(sfGFP)与α-CD配合物在其表面氨基酸位置39处显示Pap的x射线晶体学分析。虽然这种实验结构总体上证实了分子模型预测的主客体相互作用模式,但有两个意想不到的观察结果:(1)圆锥形的α-CD与Pap的氨基基部分结合,尽管在空间上要求更高;(2)偶氮苯侧链的两个苯基环呈相当扭曲的构象,这与通常预期的未修饰的偶氮苯及其化学衍生物的完全共面排列形成对比。因此,这种光可切换非规范氨基酸Pap(也称为AzoF或AzoPhe)的晶体结构为未来赋予蛋白质光可控功能的分子工程努力提供了有价值的见解。
{"title":"Structural Basis of the Light-Switchable Interaction between an Azobenzene Side Chain in a Biosynthetic Protein and α-Cyclodextrin.","authors":"Andreas Eichinger, Peter Mayrhofer, Markus R Anneser, Leonie Jarzinka, Arne Skerra","doi":"10.1002/open.202500471","DOIUrl":"10.1002/open.202500471","url":null,"abstract":"<p><p>Azobenzene derivatives, which show light-induced reversible trans↔cis isomerization, have gained increasing attention in the area of protein science. p-(Phenylazo)-L-phenylalanine (Pap) was recently employed to enable the light-controlled affinity purification of biosynthetic proteins as part of the Azo-tag. Specific supramolecular complex formation with immobilized α-cyclodextrin (α-CD) groups is mediated by the Pap side chain in its low-energy trans-configuration, whereas photoisomerization to the cis-state leads to immediate dissociation. Here, we describe the X-ray crystallographic analysis of super-folder green fluorescent protein (sfGFP) displaying Pap at amino acid position 39 on its surface in complex with α-CD. While this experimental structure generally confirms the mode of host-guest interaction predicted by molecular modeling, there are two unexpected observations: (i) the conically shaped α-CD binds with its narrow end toward the aminoacyl moiety of Pap, despite appearing sterically more demanding, and (ii) the azobenzene side chain shows a considerably twisted conformation of its two phenyl rings, which contrasts with the fully coplanar arrangement usually anticipated for unmodified azobenzene and its chemical derivatives. Thus, this crystal structure of the photoswitchable noncanonical amino acid Pap (also known as AzoF or AzoPhe) provides valuable insight for future molecular engineering endeavors to endow proteins with light-controllable functions.</p>","PeriodicalId":9831,"journal":{"name":"ChemistryOpen","volume":" ","pages":"e202500471"},"PeriodicalIF":3.1,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145548477","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
ChemistryOpen
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1