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Discovery of Potential GPRC5D Inhibitors through Virtual Screening and Molecular Dynamics Simulations 通过虚拟筛选和分子动力学模拟发现潜在的GPRC5D抑制剂。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-07 DOI: 10.1002/open.202500360
Xi Chen, Xinle Yang, Roufen Chen, Lei Xu, Xiaowu Dong, Zhen Cai

G protein-coupled receptor family C, group 5, member D (GPRC5D), a member of the G protein-coupled receptor (GPCR) family, has recently emerged as a promising target for immunotherapy in hematologic malignancies, particularly multiple myeloma. However, no systematic virtual screening studies have been conducted to identify small-molecule inhibitors targeting GPRC5D. To address this gap, a multistep computational screening strategy is developed that integrates Protein−Ligand Affinity prediction NETwork (PLANET), a GPU-accelerated version of AutoDock Vina (Vina-GPU), molecular mechanics/generalized born surface area (MM/GBSA), and an online tool for Absorption, Distribution, Metabolism, Excretion, and Toxicity (ADMET) property prediction (admetSAR 3.0), complemented by molecular dynamics (MD) simulations and absolute binding free energy (ABFE). From an initial library of 8,617 compounds, four candidates (compounds 1, 2, 7, and 8) are prioritized. Among them, compound 2 shows relatively strong binding affinity (MM/GBSA ΔG = −79.8 kcal mol−1, ABFE = −9.0 kcal mol−1) and high drug-likeness (quantitative estimate of drug-likeness = 0.670). MD simulations confirm its stable salt bridge interactions with key residues ASP238 and ASP239. This study proposes a systematic virtual screening workflow to facilitate the discovery of GPRC5D-targeted therapeutics.

G蛋白偶联受体家族C,第5组,成员D (GPRC5D)是G蛋白偶联受体(GPCR)家族的一员,最近成为血液系统恶性肿瘤,特别是多发性骨髓瘤免疫治疗的一个有希望的靶点。然而,目前还没有系统的虚拟筛选研究来确定靶向GPRC5D的小分子抑制剂。为了解决这一差距,开发了一种多步骤计算筛选策略,该策略集成了蛋白质配体亲和力预测网络(PLANET), gpu加速版AutoDock Vina (Vina- gpu),分子力学/广义出生表面积(MM/GBSA),以及吸收,分布,代谢,排泄和毒性(ADMET)性质预测的在线工具(admetSAR 3.0),并辅以分子动力学(MD)模拟和绝对结合自由能(ABFE)。从8,617个化合物的初始库中,优先考虑4个候选化合物(化合物1、2、7和8)。其中化合物2具有较强的结合亲和力(MM/GBSA ΔG = -79.8 kcal mol-1, ABFE = -9.0 kcal mol-1)和较高的药物相似度(药物相似度定量估计= 0.670)。MD模拟证实了其与关键残基ASP238和ASP239之间稳定的盐桥相互作用。本研究提出了一个系统的虚拟筛选工作流程,以促进gprc5d靶向治疗的发现。
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引用次数: 0
Front Cover: Aqueous Binders for Electrochemically Stable VOPO4 2H2O Anodes for Li-Ion Storage (ChemistryOpen 9/2025) 封面:用于锂离子存储的电化学稳定的VOPO4 2H2O阳极的水性粘合剂(chemyopen 9/2025)
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-04 DOI: 10.1002/open.70046
Alexander Beutl, Andrea Paolella, Yuri Surace, Qixiang Jiang, Marcus Jahn, Artur Tron

The Front Cover image highlights the performance of hydrothermal VOPO4 2H2O anodes using eco-friendly aqueous binders—CMC, PAA, and their CMC-PAA blend—compared to conventional PVDF. The CMC-PAA binder ensures strong adhesion, uniform material distribution, and stable SEI formation, enabling enhanced cycling stability and lithium-ion diffusion for sustainable battery manufacturing. More details are available in the Research Article by Artur Tron and co-workers (DOI: 10.1002/open.202500102).

封面图片突出了与传统PVDF相比,使用环保型水性粘合剂(cmc, PAA及其CMC-PAA混合物)的水热VOPO4 2H2O阳极的性能。CMC-PAA粘合剂可确保强附着力、均匀的材料分布和稳定的SEI形成,从而增强循环稳定性和锂离子扩散,从而实现可持续电池制造。更多细节可以在Artur Tron及其同事的研究文章中获得(DOI: 10.1002/open.202500102)。
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引用次数: 0
Multidirectional in silico and in vitro Research for the Pharmaceutical Potential of Fibigia Clypeata (L.) Medik: Phytochemical, Antimicrobial, and Antimyeloma Properties 多方向硅片和体外研究芦苇的药用潜力媒介:植物化学、抗菌和抗骨髓瘤特性。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-04 DOI: 10.1002/open.202500036
Tuba Unver, Ugur Uzuner, Dilara Akcora-Yildiz, Ismet Gurhan, Caglar Arkan, Zeynep Ozdemir

Fibigia clypeata (L.) Medik, a member of the Brassicaceae, has been the subject of limited research on its pharmaceutical and medicinal properties. This study aims to evaluate the phytochemical, antimicrobial, and antimyeloma properties of F. clypeata extracts and detail these results in silico analyses. The minimum inhibitory concentration (MIC) of F. clypeata extracts was determined using dilution methods, and antimyeloma activity was determined using an MTT (3-(4,5-dimethylthiazol-2-yl)−2,5-diphenyl-2H-tetrazolium bromide) assay. The findings were evaluated by in silico analyses and correlated with the results of liquid chromatography-high-resolution mass spectrometry. The inhibitory effect of the water extract (MIC is 15 mg mL-1 against bacterial strains; MICs are between 7.5 and 3.75 mg mL-1 against Candida strains) was determined to be more potent than methanol extract (MIC is 60 mg mL−1 against bacterial strains; MICs are between 30 mg/mL and 7.50 mg mL−1 against Candida strains). Molecular docking findings revealed that cyanidin 3-rutinoside chloride showed the highest binding affinity to Staphylococcus aureus MurB, Candida parapsilosis, and Candida albicans dihydrofolate reductases and the antitumor target human epidermal growth factor receptor protein. Based on MTT results, F. clypeata extracts significantly decreased cell viability dose-dependently in three human MM and noncancerous MCF10A cell lines. F. clypeata harbor valuable antimicrobial and moderately anticancerogenic compounds.

水蚤(L.)Medik是芸苔科的一员,对其药理和药用特性的研究有限。本研究的目的是评价紫皮莲提取物的植物化学、抗菌和抗骨髓瘤的特性,并在硅分析中详细说明这些结果。用稀释法测定红花提取物的最低抑制浓度(MIC),用MTT(3-(4,5-二甲基噻唑-2-基)-2,5-二苯基- 2h -溴化四唑)法测定其抗骨髓瘤活性。这些发现通过硅分析进行了评估,并与液相色谱-高分辨率质谱分析的结果相关联。水提取物(MIC对菌株的抑制作用为15 mg mL-1; MIC对念珠菌菌株的抑制作用在7.5 ~ 3.75 mg mL-1之间)比甲醇提取物(MIC对菌株的抑制作用为60 mg mL-1; MIC对念珠菌菌株的抑制作用在30 mg/mL ~ 7.50 mg mL-1之间)更有效。分子对接结果显示,花青素3-芦丁苷氯对金黄色葡萄球菌MurB、副假丝酵母和白色假丝酵母二氢叶酸还原酶和抗肿瘤靶点人表皮生长因子受体蛋白的结合亲和力最高。MTT结果显示,在三种人MM和非癌性MCF10A细胞系中,山茱萸提取物显著降低细胞活力,且呈剂量依赖性。山茱萸含有有价值的抗菌和中度抗癌成分。
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引用次数: 0
Drug Repurposing Investigation for Combating Ebola Virus Disease: Database Mining, Docking Calculations, Molecular Dynamics, and Density Functional Theory Study 对抗埃博拉病毒疾病的药物再利用研究:数据库挖掘、对接计算、分子动力学和密度泛函理论研究。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-02 DOI: 10.1002/open.202500348
Alaa H. M. Abdelrahman, Gamal A. H. Mekhemer, Peter A. Sidhom, Mohamed A. El-Tayeb, Shahzeb Khan, Mahmoud A. A. Ibrahim

Ebola virus (EBOV), one of the deadliest diseases, is responsible for infecting individuals with hemorrhagic fever syndrome, which remains an ongoing worldwide health concern. The extremely deadly nature and virulence of EBOV illness illuminate the imperative need to evolve effective curative agents. Viral protien (VP35) acts as an Achilles heel for EBOV reproduction and also interacts with numerous human proteins, which leads to impairing the immune system. Herein, the DrugBank database, containing >14000 investigational and approved drugs, is mined to hunt prospective inhibitors toward VP35 utilizing various computational approaches. Docking technique performance is initially validated to predict the VP35-inhibitor binding pose upon the accessible experimental data. Molecular dynamics simulations (MDS) are then conducted in triplicate on the top potent drug candidates, followed by binding energy (ΔGbinding) estimations using molecular mechanics/generalized Born surface area (MM/GBSA) approach. Upon MM/GBSA//250 ns MDS, DB14875 and DB07800 revealed better binding energy against VP35 than 1D9, reference inhibitor, with ΔGbinding values of −36.6, −35.6, and −29.3 kcal mol−1, respectively. Post-MD analyses demonstrate great stability for the identified drug candidates complexed with VP35 over 250 ns MDS. Ultimately, the density functional theory computations are executed, and their outcomes elucidate favorable molecular reactivity of the identified drug candidates. Conclusively, these findings suggest promising inhibitors for VP35, warranting further experimental assays.

埃博拉病毒(EBOV)是最致命的疾病之一,它使个体感染出血热综合征,这仍然是一个持续的全球卫生问题。EBOV疾病的极端致命性和毒性表明迫切需要开发有效的治疗药物。病毒蛋白(VP35)是EBOV繁殖的致命弱点,也与许多人类蛋白质相互作用,导致免疫系统受损。在此,DrugBank数据库包含bb1014000种正在研究和批准的药物,利用各种计算方法寻找VP35的潜在抑制剂。初步验证对接技术性能,根据可获得的实验数据预测vp35 -抑制剂的结合位姿。然后对最有效的候选药物进行三次分子动力学模拟(MDS),然后使用分子力学/广义Born表面积(MM/GBSA)方法进行结合能(ΔGbinding)估计。在MM/GBSA//250 ns MDS上,DB14875和DB07800对VP35的结合能高于对照抑制剂1D9,其ΔGbinding值分别为-36.6、-35.6和-29.3 kcal mol-1。在超过250 ns MDS范围内,与VP35络合的候选药物具有很强的稳定性。最后,执行密度泛函理论计算,其结果阐明了所确定的候选药物的有利分子反应性。总之,这些发现表明VP35的抑制剂很有希望,需要进一步的实验分析。
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引用次数: 0
Performance Study of Nickel Oxide Graphite Felts as Electrode Materials for Ferrochromium Flow Batteries 氧化镍石墨毡作为铁铬液流电池电极材料的性能研究。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-02 DOI: 10.1002/open.202500405
Jia-ning Xie, Xu Dai, Meng-yao Liu, Xuan-sen Li, Rui-xian Feng, Hai-lin Ren, Hao-wen Wang, Xiao-min Wang

Herein, the performance of nickel-oxide-modified graphite felts as electrode materials for Fe/Cr liquid flow batteries is investigated by combining density functional theory and experiments. The results show that the adsorption of NiO on Fe/Cr ions is more stable than that on graphite felt, and more electrochemically active sites are provided. The charge transfer after adsorption is larger, which is more conducive to the redox reaction during the charging and discharging processes. Finally, the experimental results further prove that the first discharge capacity of the nickel oxide-modified graphite felt reaches 22.0 Ah L, which is much higher than that of the unmodified graphite felt (12.4 Ah L). In addition, its energy efficiency could reach up to 59.5%, which is 27.3% higher than that of the original electrode.

本文采用密度泛函理论和实验相结合的方法,研究了氧化镍改性石墨毡作为Fe/Cr液流电池电极材料的性能。结果表明,NiO在Fe/Cr离子上的吸附比在石墨毡上的吸附更稳定,并提供了更多的电化学活性位点。吸附后的电荷转移量较大,更有利于充放电过程中的氧化还原反应。最后,实验结果进一步证明,氧化镍改性石墨毡的首次放电容量达到22.0 Ah L -1 $^{-1}$,远高于未改性石墨毡的12.4 Ah L -1 $^{-1}$。此外,其能量效率可达59.5%,比原电极提高27.3%。
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引用次数: 0
Exotic Molecules and Clusters 外来分子和团簇
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-28 DOI: 10.1002/open.202400343
Ambrish Kumar Srivastava, Pratim Kumar Chattaraj

This special collection offers articles based on exotic molecules and clusters. These articles provide the current research status and applications of the exotic species.

这个特别的集合提供了基于外来分子和集群的文章。本文介绍了外来种的研究现状及应用。
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引用次数: 0
Insights on Regioselective Synthesis of Fused Thiazoles: Density Functional Theory Calculations, Local Reactivity Indices, and Molecular Electrostatic Potential Analysis 对融合噻唑的区域选择性合成的见解:密度泛函理论计算,局部反应性指数和分子静电势分析。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-28 DOI: 10.1002/open.202500393
Ghaferah H. Al-Hazmi, Jehan Y. Al-Humaidi, Sayed M. Riyadh, Mohamed S. M. Ahmed, Magdi E. A. Zaki, Awatif H. Alruwaili, Khaled A. Alanazi, Rajeh H. Almutairi, Sobhi M. Gomha

A regioselective protocol is developed and validated for the synthesis of pyrazolo[3,4-d]thiazoles and polycyclic-fused thiazoles through the reactions of 2-[((E)-benzylidene)hydrazono]-5-[(Z)-4-methoxybenzylidene]thiazolidin-4-one with hydrazine derivatives or heterocyclic amines, respectively. The products are confirmed by spectral and elemental analyses. Density functional theory studies, including frontier molecular orbital analysis, local reactivity indices, and molecular electrostatic potential mapping, explain the observed regioselectivity and support a proposed reaction mechanism. Molecular docking shows that several derivatives (e.g., 6c, 6d) have strong binding to S. aureus, E. coli, and topoisomerase IIα, with energies comparable to standard drugs. Absorption, distribution, metabolism, excretion, and toxicity predictions indicate good oral bioavailability, low blood–brain barrier permeability, and acceptable safety, suggesting these compounds as promising antibacterial and anticancer candidates.

通过2-[((E)-苄基苄基)肼]-5-[(Z)-4-甲氧基苄基]噻唑烷-4-酮与肼衍生物或杂环胺的反应,建立并验证了区域选择性合成吡唑[3,4-d]噻唑和多环融合噻唑的方法。产物经光谱和元素分析证实。密度泛函理论研究,包括前沿分子轨道分析、局部反应性指数和分子静电势作图,解释了观察到的区域选择性,并支持了所提出的反应机制。分子对接表明,几种衍生物(如6c、6d)与金黄色葡萄球菌、大肠杆菌和拓扑异构酶i α有很强的结合,其能量与标准药物相当。吸收、分布、代谢、排泄和毒性预测表明,这些化合物具有良好的口服生物利用度、低血脑屏障通透性和可接受的安全性,这表明这些化合物是有前途的抗菌和抗癌候选者。
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引用次数: 0
Structure-Guided Identification and Evaluation of Epalrestat and Ranirestat-Like Compounds Against Aldose Reductase: Therapeutic Management of Diabetic Neuropathy 依帕司他和雷尼司他样化合物抗醛糖还原酶的结构导向鉴定和评价:糖尿病神经病变的治疗管理。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-22 DOI: 10.1002/open.202500110
Mohd Shahnawaz Khan, Dharmendra Kumar Yadav, Moyad Shahwan, Anas Shamsi

Aldose reductase (ALDR) is a critical protein involved in the pathogenesis of diabetic complications such as retinopathy, neuropathy, and nephropathy. Due to the activation of inflammatory and cytotoxic pathways under hyperglycemic conditions, ALDR has become an important target for therapeutic development. Currently, available drugs such as epalrestat and ranirestat are suboptimal due to factors such as toxicity and low solubility. In this study, a structure-based approach was used to screen the PubChem database to identify novel ALDR inhibitors with a Tanimoto coefficient greater than 0.8 with the structural frameworks of epalrestat and ranirestat. A systematic virtual screening, including molecular docking, drug-likeness assessment, and molecular dynamics (MD) simulations, revealed two promising candidates, PubChem CIDs: 45110135 and 58643777. These compounds showed higher binding and selectivity toward ALDR than epalrestat and ranirestat in docking studies. MD simulations supported the stability and preferred dynamics of their interactions with ALDR. These findings suggest that compounds CID:45110135 (N-[3-fluoro-4-(4-fluoro-1,3-dioxoisoindol-2-yl)phenyl]pyridine-2-carboxamide) and CID:58643777 ([(5Z)-4-oxo-2-sulfanylidene-5-[[3-[3-(trifluoromethyl)phenyl]phenyl]methylidene]−1,3-thiazolidin-3-yl]propanoic acid) might have the potential to be lead compounds for the development of new drugs for diabetic neuropathy after required validation.

醛糖还原酶(ALDR)是参与糖尿病并发症如视网膜病变、神经病变和肾病发病的关键蛋白。由于高血糖状态下炎症和细胞毒性通路的激活,ALDR已成为治疗发展的重要靶点。目前,由于毒性和低溶解度等因素,现有的依帕司他和雷尼司他等药物都不是最理想的。在本研究中,采用基于结构的方法筛选PubChem数据库,以确定具有依帕司他和雷尼司他结构框架的谷本系数大于0.8的新型ALDR抑制剂。系统的虚拟筛选,包括分子对接,药物相似性评估和分子动力学(MD)模拟,揭示了两个有希望的候选药物,PubChem cid: 45110135和58643777。在对接研究中,这些化合物对ALDR的结合和选择性比依帕司他和雷尼司他高。MD模拟支持了它们与ALDR相互作用的稳定性和首选动力学。这些结果表明,化合物CID:45110135 (N-[3-氟-4-(4-氟-1,3-二氧异吲哚-2-基)苯基]吡啶-2-羧酰胺)和CID:58643777 ([(5Z)-4-氧-2-磺酰基-5-[[3-[3-(三氟甲基)苯基]苯基]甲基]-1,3-噻唑烷-3-基]propanoic acid)可能有潜力成为开发糖尿病神经病变新药的先导化合物。
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引用次数: 0
Front Cover: Hybrid Perovskite Solar Cells: A Disruptive Technology for Hydrogen Production through Photocatalytic Water Splitting (ChemistryOpen 8/2025) 封面:混合钙钛矿太阳能电池:通过光催化水分解生产氢的颠覆性技术(chemyopen 8/2025)
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-21 DOI: 10.1002/open.70021
S. Akin Olaleru, Nithyadharseni Palaniyandy, Bhekie B. Mamba, Bonex W. Mwakikunga

This image depicts a hydrogen fuel cell ecosystem, showing the complete cycle from renewable energy production to zero-emission transportation. Solar panels generate electricity to power electrolysis, splitting water (H2O) into hydrogen (H2) and oxygen (O2). The produced hydrogen fuels a clean vehicle at a refuelling station, illustrating a sustainable hydrogen energy technology. More information can be found in the Review by S. Akin Olaleru, Nithyadharseni Palaniyandy, Bhekie B. Mamba, and Bonex W. Mwakikunga (DOI: 10.1002/open.202500181).

这张图片描绘了一个氢燃料电池生态系统,展示了从可再生能源生产到零排放运输的完整循环。太阳能电池板产生电能,为电解提供动力,将水(H2O)分解成氢(H2)和氧(O2)。生产的氢燃料在加氢站为一辆清洁的汽车提供燃料,展示了可持续的氢能源技术。更多信息可以在S. Akin Olaleru, Nithyadharseni Palaniyandy, hekie B. Mamba和Bonex W. Mwakikunga的评论中找到(DOI: 10.1002/open.202500181)。
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引用次数: 0
N-Geranylated Amino Acid Surfactants with Low Critical Micelle Concentrations from Abundant, Naturally Derived Starting Materials 具有低临界胶束浓度的n -香叶酰化氨基酸表面活性剂,来源于丰富的天然原料。
IF 3.1 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-21 DOI: 10.1002/open.202500421
Brett L. Pollard, Yumeng Liu, Michael G. Gardiner, Luke A. Connal

In this work, a simple method for the preparation of N-alkylated amino acid surfactants in 1–2 steps is reported. These products perform comparably to existing ionic surfactants, with N-tetrahydrogeranylated serine having a critical micelle concentration (CMC) of only 7.4 mmol·L−1. The suite of multiply charged surfactants generally possesses CMCs comparable to existing ionic surfactants. Further, their synthesis is simple, high-yielding, scalable, and does not require complex purification. The most hydrophobic surfactant (N-geranylated glycine) was found to have a log n-octanol-water partition coefficient (Pow) of 1.6 (indicating low bioaccumulative potential), and a single-step product (N-geranylated aspartic acid) was assessed for detergency potential via swatch testing.

本文报道了一种简单的1-2步制备n -烷基化氨基酸表面活性剂的方法。这些产物的性能与现有的离子表面活性剂相当,其中n -四氢香叶基化丝氨酸的临界胶束浓度(CMC)仅为7.4 mmol·L-1。复合表面活性剂通常具有与现有离子表面活性剂相当的cmc。此外,它们的合成简单,产量高,可扩展,不需要复杂的纯化。最疏水的表面活性剂(n-香叶酰化甘氨酸)的对数正辛醇-水分配系数(Pow)为1.6(表明低生物蓄积性),并通过样品测试评估了单步产物(n-香叶酰化天冬氨酸)的去除率。
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引用次数: 0
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