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Shifted baselines: Using the adaptive cycle to assess the post-tsunami mangrove social-ecological system recovery in the Nicobar Islands. 转移基线:利用适应周期评估尼科巴群岛海啸后红树林社会生态系统的恢复情况。
IF 5.8 2区 环境科学与生态学 Q2 ENGINEERING, ENVIRONMENTAL Pub Date : 2025-03-01 Epub Date: 2024-11-06 DOI: 10.1007/s13280-024-02088-3
Nehru Prabakaran, Meenakshi Poti, Jean Hugé, Nico Koedam, Kartik Shanker, Farid Dahdouh-Guebas

The 2004 tsunami and coastal subsidence resulted in 97% mangrove loss in the Nicobar Islands (India), leading to major social-ecological change. We assessed how the Nicobar mangrove social-ecological system (SES) responded to the 2004 event using the adaptive cycle (AC) framework. We describe the changes across AC phases (collapse-Ω, reorganisation-α, growth-r, and conservation-K) concerning various capital types (natural, built, human, social), connectedness and resilience. The subsidence and tsunami triggered a rapid collapse (Ω) in the mangrove SES, particularly depleting natural and built capitals. Despite declines in social and human capital, some knowledge and skills were retained within Nicobari communities. We suggest that locally managed interventions involving mangrove restoration are critical to escape the poverty trap caused by resource insufficiency hindering growth. The AC model helps visualise and describe temporal changes, preparing for recovery challenges. This approach is relevant to SESs beyond Nicobar, offering insights for sites confronting similar social-ecological dynamics and challenges.

2004 年的海啸和海岸沉降导致尼科巴群岛(印度)97% 的红树林消失,引发了重大的社会生态变化。我们利用适应周期(AC)框架评估了尼科巴红树林社会生态系统(SES)如何应对 2004 年的海啸。我们描述了适应周期各阶段(崩溃-Ω、重组-α、增长-r 和保护-K)在各种资本类型(自然资本、建筑资本、人力资本、社会资本)、关联性和恢复力方面的变化。沉降和海啸引发了红树林生态系统服务迅速崩溃 (Ω),尤其是自然资本和建筑资本的损耗。尽管社会资本和人力资本减少,但尼科巴里社区仍保留了一些知识和技能。我们建议,由当地管理的涉及红树林恢复的干预措施对于摆脱因资源不足阻碍增长而造成的贫困陷阱至关重要。交流模型有助于直观描述时间变化,为应对恢复挑战做好准备。这种方法适用于尼科巴以外的社会经济环境,可为面临类似社会生态动态和挑战的地点提供启示。
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引用次数: 0
Interacting impacts of hydrological changes and air temperature warming on lake temperatures highlight the potential for adaptive management. 水文变化和气温变暖对湖泊温度的相互影响凸显了适应性管理的潜力。
IF 5.8 2区 环境科学与生态学 Q2 ENGINEERING, ENVIRONMENTAL Pub Date : 2025-03-01 Epub Date: 2024-05-25 DOI: 10.1007/s13280-024-02015-6
Freya Olsson, Eleanor B Mackay, Bryan M Spears, Philip Barker, Ian D Jones

Globally, climate warming is increasing air temperatures and changing river flows, but few studies have explicitly considered the consequences for lake temperatures of these dual effects, or the potential to manage lake inflows to mitigate climate warming impacts. Using a one-dimensional model, we tested the sensitivity of lake temperatures to the separate and interacting effects of changes in air temperature and inflow on a small, short-residence time (annual average ≈ 20 days), temperate lake. Reducing inflow by 70% increased summer lake surface temperatures 1.0-1.2 °C and water column stability by 11-19%, equivalent to the effect of 1.2 °C air temperature warming. Conversely, similar increases in inflow could result in lake summer cooling, sufficient to mitigate 0.75 °C air temperature rise, increasing to more than 1.1 °C if inflow temperature does not rise. We discuss how altering lake inflow volume and temperature could be added to the suite of adaptation measures for lakes.

在全球范围内,气候变暖导致气温升高、河流流量变化,但很少有研究明确考虑到这些双重效应对湖泊温度的影响,或管理湖泊流入量以减轻气候变暖影响的潜力。利用一维模型,我们测试了湖泊温度对气温变化和流入量变化对一个小型、短驻留时间(年平均≈20 天)温带湖泊的单独和交互影响的敏感性。将流入量减少 70% 会使夏季湖面温度升高 1.0-1.2 °C,水体稳定性增加 11-19%,相当于气温升高 1.2 °C。相反,如果流入水温不升高,类似的流入水量增加可导致湖泊夏季降温,足以缓解 0.75 ° C 的气温升高,升温幅度超过 1.1 °C。我们将讨论如何在湖泊适应措施中增加改变湖泊流入量和温度的措施。
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引用次数: 0
Kolkata's green oasis: a comprehensive analysis of urban green spaces for ecosystem sustainability.
IF 5.8 3区 环境科学与生态学 0 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-03 DOI: 10.1007/s11356-024-35756-8
Poushali Biswas, Amit Kumar, Manjari Upreti, Gajendra Kumar, Purabi Saikia

In the present study, the impact of urban growth on green spaces in Kolkata Metropolitan City (KMC) was evaluated using the multi-temporal satellite observations spanning the last four decades (1990-2022). The study exhibited a rapid rise in urban areas (178.38% growth; net increase 498 sq.km), leading to a significant conversion of areas into moderate to very high built-up density zones. This urbanization has markedly altered the green-blue infrastructure, notably causing a 27% decline in urban green space (UGS) resulting a net loss of 254 sq.km. Fragmentation analysis exhibited a trend of compact, infill development in urban regions, contrasting with outgrowth, which has influenced both the cluster size and quality of UGS over the decades. The multi-indices and biophysical characterization of UGS concluded a deteriorating trend in terms of quantity (- 27.9%) and quality as well with reference. However, the existing UGS are primarily scattered and having less dense. Spatial estimation of above ground biomass (AGB) of UGS using regression analysis of field-derived AGB and L-band SAR backscatter depicted a dominance of low AGB (< 30 t/ha-1) across KMC, while the certain zones with improved UGS exhibited moderate AGB levels (50-100 t/ha-1). The fuzzy AHP-based multi-criteria analysis of urban ecological quality exhibited severe ecological deterioration in the central urban areas, moderate to high in peri-urban regions, and comparatively improved ecological conditions in the peripheral rural parts of KMC. The study also identified major native tree species for plantation strategies comprising urban afforestation, rooftop gardens, and the development of green corridors in ecologically deficient hotspot zones to improve the ecological quality within the urban landscape.

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引用次数: 0
Correction to: Evaluation and Optimization of the Different Process Parameters of Mild Acid Pretreatment of Waste Lignocellulosic Biomass for Enhanced Energy Procreation.
IF 3.1 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-03 DOI: 10.1007/s12010-025-05180-w
Uma Kumari, Pratibha Gupta
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引用次数: 0
Evaluation of selected indigenous spices- and herbs-derived small molecules as potential inhibitors of SREBP and its implications for breast cancer using MD simulations and MMPBSA calculations.
IF 3.9 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2025-02-03 DOI: 10.1007/s11030-025-11122-9
Urvashi Tiwari, Salman Akhtar, Snober S Mir, Mohammad Kalim Ahmad Khan

In this study, we conducted an extensive analysis of 252 bioactive compounds derived from native spices and herbs for their potential anti-breast cancer activity against sterol regulatory element-binding protein (SREBP), using in silico techniques. To evaluate the oral bioavailability, overall pharmacokinetics, and safety profiles of these compounds, we employed Lipinski's rule of five and ADME descriptors, which depicted 66 lead molecules. These molecules were then docked with the SREBP using molecular docking tools, which revealed that diosgenin and smilagenin were the most promising hits compared to the reference inhibitor betulin, with average binding affinities of - 7.42 and - 7.37 kcal/mol and - 6.27 kcal/mol, respectively. To further assess the stability of these complexes along with betulin, we conducted molecular dynamics simulations over a 100 ns simulation period. We employed various parameters, including the root-mean-square deviation, root-mean-square fluctuation, solvent-accessible surface area, free energy of solvation, and radius of gyration, followed by principal component analysis. Furthermore, we evaluated the toxicity of the selected compounds against various anticancer cell lines, as well as their metabolic activity related to CYP450 metabolism and biological activity spectrum. Based on these results, both molecules exhibited promising drug candidate potential and could be utilized for further experimental analysis to elucidate their anticancer potential.

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引用次数: 0
Potent SARS-CoV-2 3C-like protease inhibitor ( +)-eupenoxide-3,6-diketone (IC50: 0.048 μM) was synthesized based on ( +)-eupenoxide; lead from ( +)-eupenoxide analogs study by endophytic fermentation.
IF 2.5 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-02-03 DOI: 10.1007/s11418-024-01874-3
Shoji Maehara, Moeka Kumamoto, Shogo Nakajima, Yuhzo Hieda, Koichi Watashi, Toshiyuki Hata

Since the coronavirus disease 2019 (COVID-19) outbreak, research has been conducted on treatment and countermeasures against the causative severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, the development of new seeds is urgently needed because viruses have the characteristic of becoming resistant through mutation. We hypothesize that endophytes produce antiviral substances to combat foreign viruses in host plants. According to this hypothesis, the seeds of therapeutic agents for infectious diseases could be obtained from endophytes by culture experiments. This report found that Aspergillus sp. endophyte isolated from Catharanthus roseus produced ( +)-eupenoxide and its 3-ketone form with anti-SARS-CoV-2 activity. In addition, ( +)-eupenoxide-3,6-diketon was discovered as a new compound with potent 3C-like protease inhibitory activity (IC50: 0.048 μM) by synthesis based on ( +)-eupenoxide. This finding could be an important evidence that endophytic fungi symbiosis with medicinal plants is useful as antiviral producers.

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引用次数: 0
Discovery of novel A2AR antagonist via 3D-QSAR pharmacophore modeling: neuroprotective effects in 6-OHDA-induced SH-SY5Y cells and haloperidol-induced Parkinsonism in C57 bl/6 mice.
IF 3.9 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2025-02-03 DOI: 10.1007/s11030-025-11120-x
Ankit Singh, Amresh Prakash, Jyoti Mishra, Pratibha Mehta Luthra

Parkinson's disease (PD) is the second most prevalent neurodegenerative disorder which is caused by abrupt degeneration of dopaminergic neuronal cells in the substantia nigra pars compacta (SNPc) area of the midbrain. Adenosine A2A receptors have become promising therapeutic targets for PD; however, many A2A receptor antagonists face challenges, such as limited accessibility or failure in clinical trials due to poor selectivity and bioavailability. To identify novel A2A receptor antagonists, a 3D-QSAR-pharmacophore modeling approach was employed, involving virtual screening of ZINC, NCI, and MayBridge databases. The virtual hits were filtered via ADMET criteria to select compounds with favorable bioavailability and solubility profiles. From the MayBridge database, a potent monocyclic A2A receptor antagonist, AW00032 (N-(furan-2-ylmethyl)-5-methylthiazole-4-yl) thiophene-2-sulfonamide, was identified. AW00032 possessed key pharmacophoric features: two lipophilic hydrogen bond acceptors, one hydrophobic aliphatic/aromatic group, and one aromatic ring. Docking analysis revealed AW00032 had a strong binding affinity for A2A receptors (1.23 nM, ∆G - 10.49 kcal/mol), and its ADMET profile indicated good bioavailability. In 6-OHDA induced SH-SY5Y cells, AW00032 increased dopamine levels and tyrosine hydroxylase (TH) expression, demonstrating its potential as an A2A receptor antagonist. AW00032, discovered through 3D-QSAR pharmacophore modeling, also reduced reactive oxygen species (ROS) levels and showed depletion in mitochondrial dysfunction in 6-OHDA-induced SH-SY5Y cells. It exhibited A2A receptor antagonist activity comparable to the standard antagonist ZM241385, partially restoring dopamine and TH levels. Furthermore, AW00032 improved behavioral symptoms in haloperidol-induced C-57 bl/6 mice.

{"title":"Discovery of novel A<sub>2A</sub>R antagonist via 3D-QSAR pharmacophore modeling: neuroprotective effects in 6-OHDA-induced SH-SY5Y cells and haloperidol-induced Parkinsonism in C57 bl/6 mice.","authors":"Ankit Singh, Amresh Prakash, Jyoti Mishra, Pratibha Mehta Luthra","doi":"10.1007/s11030-025-11120-x","DOIUrl":"https://doi.org/10.1007/s11030-025-11120-x","url":null,"abstract":"<p><p>Parkinson's disease (PD) is the second most prevalent neurodegenerative disorder which is caused by abrupt degeneration of dopaminergic neuronal cells in the substantia nigra pars compacta (SNPc) area of the midbrain. Adenosine A<sub>2A</sub> receptors have become promising therapeutic targets for PD; however, many A<sub>2A</sub> receptor antagonists face challenges, such as limited accessibility or failure in clinical trials due to poor selectivity and bioavailability. To identify novel A<sub>2A</sub> receptor antagonists, a 3D-QSAR-pharmacophore modeling approach was employed, involving virtual screening of ZINC, NCI, and MayBridge databases. The virtual hits were filtered via ADMET criteria to select compounds with favorable bioavailability and solubility profiles. From the MayBridge database, a potent monocyclic A<sub>2A</sub> receptor antagonist, AW00032 (N-(furan-2-ylmethyl)-5-methylthiazole-4-yl) thiophene-2-sulfonamide, was identified. AW00032 possessed key pharmacophoric features: two lipophilic hydrogen bond acceptors, one hydrophobic aliphatic/aromatic group, and one aromatic ring. Docking analysis revealed AW00032 had a strong binding affinity for A<sub>2A</sub> receptors (1.23 nM, ∆G - 10.49 kcal/mol), and its ADMET profile indicated good bioavailability. In 6-OHDA induced SH-SY5Y cells, AW00032 increased dopamine levels and tyrosine hydroxylase (TH) expression, demonstrating its potential as an A<sub>2A</sub> receptor antagonist. AW00032, discovered through 3D-QSAR pharmacophore modeling, also reduced reactive oxygen species (ROS) levels and showed depletion in mitochondrial dysfunction in 6-OHDA-induced SH-SY5Y cells. It exhibited A<sub>2A</sub> receptor antagonist activity comparable to the standard antagonist ZM241385, partially restoring dopamine and TH levels. Furthermore, AW00032 improved behavioral symptoms in haloperidol-induced C-57 bl/6 mice.</p>","PeriodicalId":708,"journal":{"name":"Molecular Diversity","volume":" ","pages":""},"PeriodicalIF":3.9,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143078427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The activation of the metal-containing regulatory protein NiaR from Thermotoga maritima by its effector, nicotinic acid.
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-03 DOI: 10.1007/s00775-025-02096-y
Wai Chung Dorothy Cheng, Yuxin Li, Maileen Nakashima, Pierre Moënne-Loccoz, Katherine W Rush, Arthur Glasfeld

NiaR is a regulatory protein that represses the expression of proteins involved in the de novo biosynthesis and uptake of nicotinic acid (NA), with NA acting as a co-repressor. The previously published structure of NiaR from Thermotoga maritima (TmNiaR) identified it as a functional homodimer containing a transition metal ion in a suspected NA-binding pocket. Here, we present the crystal structure of NA bound to the iron-metalated form of TmNiaR. Supported by spectroscopic and solution studies, this structure shows that NA binds to a protein-bound ferrous ion via its ring nitrogen. In addition, the carboxylate group on NA interacts with Tyr108 from the dyad-related subunit, repositioning the likely DNA-binding domains of the dimer to promote high-affinity interactions with DNA operators. The specificity of TmNiaR for NA can be explained by the hydrogen bonding scheme within the NA-binding pocket.

{"title":"The activation of the metal-containing regulatory protein NiaR from Thermotoga maritima by its effector, nicotinic acid.","authors":"Wai Chung Dorothy Cheng, Yuxin Li, Maileen Nakashima, Pierre Moënne-Loccoz, Katherine W Rush, Arthur Glasfeld","doi":"10.1007/s00775-025-02096-y","DOIUrl":"https://doi.org/10.1007/s00775-025-02096-y","url":null,"abstract":"<p><p>NiaR is a regulatory protein that represses the expression of proteins involved in the de novo biosynthesis and uptake of nicotinic acid (NA), with NA acting as a co-repressor. The previously published structure of NiaR from Thermotoga maritima (TmNiaR) identified it as a functional homodimer containing a transition metal ion in a suspected NA-binding pocket. Here, we present the crystal structure of NA bound to the iron-metalated form of TmNiaR. Supported by spectroscopic and solution studies, this structure shows that NA binds to a protein-bound ferrous ion via its ring nitrogen. In addition, the carboxylate group on NA interacts with Tyr108 from the dyad-related subunit, repositioning the likely DNA-binding domains of the dimer to promote high-affinity interactions with DNA operators. The specificity of TmNiaR for NA can be explained by the hydrogen bonding scheme within the NA-binding pocket.</p>","PeriodicalId":603,"journal":{"name":"Journal of Biological Inorganic Chemistry","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143078312","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Theoretical study by DFT and TD-DFT of NLO-active push-pull molecules composed of conjugated bridges based on cyclic rings: Titanol, Ferrol, Nickelol and Zinkol.
IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-03 DOI: 10.1007/s00894-025-06294-y
Hicham Mahdjoub-Araibi, Mourad Zouaoui-Rabah, Madani Hedidi, Abdelkader M Elhorri, Assia Laib, Mohammed Zenati
<p><strong>Context: </strong>This research is based on the theoretical study of seven push-pull molecules composed of conjugated bridges based on two different organometallic rings, these bridges are linked at their ends by acceptor groups (-NO<sub>2</sub>) and donor groups (-N(CH<sub>3</sub>)<sub>2</sub>) on the α position of the rings mentioned above. The location of the donor and acceptor groups revealed that the addition of the acceptor groups near the rings (Titanol, Ferrol and Nickelol) improves the NLO response in comparison with the grafting of these groups on the Zinkol ring and also influences the positioning of the π electrons at the level of the chromophores studied. The molecule 2B gave the highest values ​​of static first hyperpolarisabilitiy (β<sub>tot</sub>) and static second hyperpolarisabilitiy (γ<sub>av</sub>), knowing that: β<sub>tot</sub> (2B) = 135.79 * 10<sup>-30</sup> esu and γ<sub>av</sub> (2B) = 135.79 * 10<sup>-35</sup> esu. The highest values ​​of dynamic first <math> <mrow><msubsup><mi>β</mi> <mo>‖</mo> <mi>λ</mi></msubsup> <mfenced><mo>-</mo> <mn>2</mn> <mi>ω</mi> <mo>;</mo> <mi>ω</mi> <mo>,</mo> <mspace></mspace> <mi>ω</mi></mfenced> </mrow> </math> and second <math> <mrow><msubsup><mi>γ</mi> <mo>‖</mo> <mi>λ</mi></msubsup> <mfenced><mo>-</mo> <mn>2</mn> <mi>ω</mi> <mo>;</mo> <mi>ω</mi> <mo>,</mo> <mspace></mspace> <mi>ω</mi> <mo>,</mo> <mspace></mspace> <mn>0</mn></mfenced> </mrow> </math> hyperpolarisabilities are assigned to the molecule 1C with the following values: <math> <mrow><msubsup><mi>γ</mi> <mo>‖</mo> <mi>λ</mi></msubsup> <mfenced><mo>-</mo> <mn>2</mn> <mi>ω</mi> <mo>;</mo> <mi>ω</mi> <mo>,</mo> <mspace></mspace> <mi>ω</mi> <mo>,</mo> <mspace></mspace> <mn>0</mn></mfenced> </mrow> </math> =1,218,310.00 * 10<sup>-30</sup> esu and <math> <mrow><msubsup><mi>γ</mi> <mo>‖</mo> <mi>λ</mi></msubsup> <mfenced><mo>-</mo> <mn>2</mn> <mi>ω</mi> <mo>;</mo> <mi>ω</mi> <mo>,</mo> <mspace></mspace> <mi>ω</mi> <mo>,</mo> <mspace></mspace> <mn>0</mn></mfenced> </mrow> </math> =1,324,520,000 * 10<sup>-35</sup> esu. The metal Zn is considered as an acceptor group and the remaining metals (Ti, Fe and Ni) are considered as donor groups. The specific solvents for the seven molecules are water, ethanol and acetonitrile. The maximum wavelengths recorded for all molecules in combination with all solvents are in the range of 421.39 to 765.28 nm. λ METHOD: The calculations were performed using Gaussian 16 software to perform DFT calculations with B3LYP functional. The LanL2DZ basis-set was used for transition metals, while the 6-31 +  + G(d,p) basis-set was used for nonmetal atoms. The functionals used are: CAM-B3LYP, LC-wPBE, LC-BLYP, M11, wB97X, M08-HX, M06-2X, MN12SX, MN15, and M06HF. The basis-sets used are: 6-31G(d,p), 6-31 +  + G(d,p), cc-pVDZ, aug-cc-pVDZ, 6-311G(d,p), 6-311 +  + G(d,p), cc-pVTZ, and aug-cc-pVTZ. The Natural Bond Orbital (NBO) calculations are performed by the NBO program incorporated by default in the Gaus
{"title":"Theoretical study by DFT and TD-DFT of NLO-active push-pull molecules composed of conjugated bridges based on cyclic rings: Titanol, Ferrol, Nickelol and Zinkol.","authors":"Hicham Mahdjoub-Araibi, Mourad Zouaoui-Rabah, Madani Hedidi, Abdelkader M Elhorri, Assia Laib, Mohammed Zenati","doi":"10.1007/s00894-025-06294-y","DOIUrl":"https://doi.org/10.1007/s00894-025-06294-y","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Context: &lt;/strong&gt;This research is based on the theoretical study of seven push-pull molecules composed of conjugated bridges based on two different organometallic rings, these bridges are linked at their ends by acceptor groups (-NO&lt;sub&gt;2&lt;/sub&gt;) and donor groups (-N(CH&lt;sub&gt;3&lt;/sub&gt;)&lt;sub&gt;2&lt;/sub&gt;) on the α position of the rings mentioned above. The location of the donor and acceptor groups revealed that the addition of the acceptor groups near the rings (Titanol, Ferrol and Nickelol) improves the NLO response in comparison with the grafting of these groups on the Zinkol ring and also influences the positioning of the π electrons at the level of the chromophores studied. The molecule 2B gave the highest values ​​of static first hyperpolarisabilitiy (β&lt;sub&gt;tot&lt;/sub&gt;) and static second hyperpolarisabilitiy (γ&lt;sub&gt;av&lt;/sub&gt;), knowing that: β&lt;sub&gt;tot&lt;/sub&gt; (2B) = 135.79 * 10&lt;sup&gt;-30&lt;/sup&gt; esu and γ&lt;sub&gt;av&lt;/sub&gt; (2B) = 135.79 * 10&lt;sup&gt;-35&lt;/sup&gt; esu. The highest values ​​of dynamic first &lt;math&gt; &lt;mrow&gt;&lt;msubsup&gt;&lt;mi&gt;β&lt;/mi&gt; &lt;mo&gt;‖&lt;/mo&gt; &lt;mi&gt;λ&lt;/mi&gt;&lt;/msubsup&gt; &lt;mfenced&gt;&lt;mo&gt;-&lt;/mo&gt; &lt;mn&gt;2&lt;/mn&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;;&lt;/mo&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mspace&gt;&lt;/mspace&gt; &lt;mi&gt;ω&lt;/mi&gt;&lt;/mfenced&gt; &lt;/mrow&gt; &lt;/math&gt; and second &lt;math&gt; &lt;mrow&gt;&lt;msubsup&gt;&lt;mi&gt;γ&lt;/mi&gt; &lt;mo&gt;‖&lt;/mo&gt; &lt;mi&gt;λ&lt;/mi&gt;&lt;/msubsup&gt; &lt;mfenced&gt;&lt;mo&gt;-&lt;/mo&gt; &lt;mn&gt;2&lt;/mn&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;;&lt;/mo&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mspace&gt;&lt;/mspace&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mspace&gt;&lt;/mspace&gt; &lt;mn&gt;0&lt;/mn&gt;&lt;/mfenced&gt; &lt;/mrow&gt; &lt;/math&gt; hyperpolarisabilities are assigned to the molecule 1C with the following values: &lt;math&gt; &lt;mrow&gt;&lt;msubsup&gt;&lt;mi&gt;γ&lt;/mi&gt; &lt;mo&gt;‖&lt;/mo&gt; &lt;mi&gt;λ&lt;/mi&gt;&lt;/msubsup&gt; &lt;mfenced&gt;&lt;mo&gt;-&lt;/mo&gt; &lt;mn&gt;2&lt;/mn&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;;&lt;/mo&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mspace&gt;&lt;/mspace&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mspace&gt;&lt;/mspace&gt; &lt;mn&gt;0&lt;/mn&gt;&lt;/mfenced&gt; &lt;/mrow&gt; &lt;/math&gt; =1,218,310.00 * 10&lt;sup&gt;-30&lt;/sup&gt; esu and &lt;math&gt; &lt;mrow&gt;&lt;msubsup&gt;&lt;mi&gt;γ&lt;/mi&gt; &lt;mo&gt;‖&lt;/mo&gt; &lt;mi&gt;λ&lt;/mi&gt;&lt;/msubsup&gt; &lt;mfenced&gt;&lt;mo&gt;-&lt;/mo&gt; &lt;mn&gt;2&lt;/mn&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;;&lt;/mo&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mspace&gt;&lt;/mspace&gt; &lt;mi&gt;ω&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mspace&gt;&lt;/mspace&gt; &lt;mn&gt;0&lt;/mn&gt;&lt;/mfenced&gt; &lt;/mrow&gt; &lt;/math&gt; =1,324,520,000 * 10&lt;sup&gt;-35&lt;/sup&gt; esu. The metal Zn is considered as an acceptor group and the remaining metals (Ti, Fe and Ni) are considered as donor groups. The specific solvents for the seven molecules are water, ethanol and acetonitrile. The maximum wavelengths recorded for all molecules in combination with all solvents are in the range of 421.39 to 765.28 nm. λ METHOD: The calculations were performed using Gaussian 16 software to perform DFT calculations with B3LYP functional. The LanL2DZ basis-set was used for transition metals, while the 6-31 +  + G(d,p) basis-set was used for nonmetal atoms. The functionals used are: CAM-B3LYP, LC-wPBE, LC-BLYP, M11, wB97X, M08-HX, M06-2X, MN12SX, MN15, and M06HF. The basis-sets used are: 6-31G(d,p), 6-31 +  + G(d,p), cc-pVDZ, aug-cc-pVDZ, 6-311G(d,p), 6-311 +  + G(d,p), cc-pVTZ, and aug-cc-pVTZ. The Natural Bond Orbital (NBO) calculations are performed by the NBO program incorporated by default in the Gaus","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 3","pages":"73"},"PeriodicalIF":2.1,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143078331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of particulate matter (PM10 and PM2.5) sources using bivariate polar plots and k-means clustering in a South American megacity: Metropolitan Area of Lima-Callao, Peru.
IF 2.9 4区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-03 DOI: 10.1007/s10661-025-13696-1
José Abel Espinoza-Guillen, Marleni Beatriz Alderete-Malpartida, Franchesco David Roncal-Romero, Joycy Claudia Vilcanqui-Sarmiento

The identification of different air pollution sources is essential to effectively control atmospheric pollution, particularly in megacities of emerging countries with rapid economic development, such as the Metropolitan Area of Lima-Callao (MALC). The objective of this research was to identify the main sources of particulate matter pollution by applying bivariate polar plots and the k-means clustering algorithm. These statistical techniques were applied to hourly in situ data of four variables collected over a 5-year period (2015-2019) by the Automatic Air Quality Monitoring Network of the MALC: wind direction, wind speed, PM10, and PM2.5 concentrations. Average PM10 concentrations ranged from 34 μg m-3 (CDM station) to 126.7 μg m-3 (VMT station), while average PM2.5 concentrations ranged from 16.8 μg m-3 (CDM station) to 41.2 μg m-3 (ATE station). The diurnal variation of PM presented two peaks, one in the morning (from 0800 to 1000 h) and the other at night (from 1900 to 2300 h), with the highest concentrations of PM10 recorded at the ATE (0800 h: 155.8 μg m-3) and VMT (2100 h: 154.6 μg m-3) stations, and PM2.5 at the ATE station (0800 h: 60.3 μg m-3 and 2300 h: 37.5 μg m-3). The results showed that the contributions of PM10 are directly related to emissions from industrial activities, automotive fleet, construction, demolition, wind erosion, and the suspension and resuspension of particulates from unpaved roads. Meanwhile, high concentrations of PM2.5 are mainly attributed to vehicle exhaust emissions, industrial emissions, secondary particulate formation, and drag by the action of the winds. The major source of particulate matter contamination is the vehicle fleet, and within this, automobiles, station wagons, combi vans, and 2 and 3-wheel motorcycles are those that have the greatest contribution. These results were supported by non-parametric statistical tests such as Kruskal-Wallis and Mann-Whitney U and validated by the conditional bivariate probability function. The findings of this work may help to implement pollution prevention and control strategies in the future within this South American megacity.

{"title":"Identification of particulate matter (PM<sub>10</sub> and PM<sub>2.5</sub>) sources using bivariate polar plots and k-means clustering in a South American megacity: Metropolitan Area of Lima-Callao, Peru.","authors":"José Abel Espinoza-Guillen, Marleni Beatriz Alderete-Malpartida, Franchesco David Roncal-Romero, Joycy Claudia Vilcanqui-Sarmiento","doi":"10.1007/s10661-025-13696-1","DOIUrl":"https://doi.org/10.1007/s10661-025-13696-1","url":null,"abstract":"<p><p>The identification of different air pollution sources is essential to effectively control atmospheric pollution, particularly in megacities of emerging countries with rapid economic development, such as the Metropolitan Area of Lima-Callao (MALC). The objective of this research was to identify the main sources of particulate matter pollution by applying bivariate polar plots and the k-means clustering algorithm. These statistical techniques were applied to hourly in situ data of four variables collected over a 5-year period (2015-2019) by the Automatic Air Quality Monitoring Network of the MALC: wind direction, wind speed, PM<sub>10</sub>, and PM<sub>2.5</sub> concentrations. Average PM<sub>10</sub> concentrations ranged from 34 μg m<sup>-3</sup> (CDM station) to 126.7 μg m<sup>-3</sup> (VMT station), while average PM<sub>2.5</sub> concentrations ranged from 16.8 μg m<sup>-3</sup> (CDM station) to 41.2 μg m<sup>-3</sup> (ATE station). The diurnal variation of PM presented two peaks, one in the morning (from 0800 to 1000 h) and the other at night (from 1900 to 2300 h), with the highest concentrations of PM<sub>10</sub> recorded at the ATE (0800 h: 155.8 μg m<sup>-3</sup>) and VMT (2100 h: 154.6 μg m<sup>-3</sup>) stations, and PM<sub>2.5</sub> at the ATE station (0800 h: 60.3 μg m<sup>-3</sup> and 2300 h: 37.5 μg m<sup>-3</sup>). The results showed that the contributions of PM<sub>10</sub> are directly related to emissions from industrial activities, automotive fleet, construction, demolition, wind erosion, and the suspension and resuspension of particulates from unpaved roads. Meanwhile, high concentrations of PM<sub>2.5</sub> are mainly attributed to vehicle exhaust emissions, industrial emissions, secondary particulate formation, and drag by the action of the winds. The major source of particulate matter contamination is the vehicle fleet, and within this, automobiles, station wagons, combi vans, and 2 and 3-wheel motorcycles are those that have the greatest contribution. These results were supported by non-parametric statistical tests such as Kruskal-Wallis and Mann-Whitney U and validated by the conditional bivariate probability function. The findings of this work may help to implement pollution prevention and control strategies in the future within this South American megacity.</p>","PeriodicalId":544,"journal":{"name":"Environmental Monitoring and Assessment","volume":"197 3","pages":"226"},"PeriodicalIF":2.9,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143078241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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