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From Arabidopsis to rice genomics: a survey of French programmes 从拟南芥到水稻基因组学:法国项目调查
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01408-1
Michel Delseny , Georges Pelletier

During the last ten years, Arabidopsis thaliana has become the most favoured plant system for the study of many aspects of development and adaptation to adverse conditions and diseases. The sequencing of the Arabidopsis thaliana genome is nearly completed with more than 90 % of the sequence being released in public databases. This is the first plant genome to be analysed and it has revealed a tremendous amount of information about the nature of the genes it contains and its largely duplicated organisation. French groups have been involved in Arabidopsis genomics at several steps: EST (expressed sequence tags) sequencing, construction and ordering (physical mapping of chromosomes) of a YAC (yeast artificial chromosomes) library, genomic sequencing. In parallel an extensive programme of functional genomics is being undertaken through the systematic analysis of insertional mutants. This information provides a support for analysing other more economically important plant genomes such as the rice genome and constitutes the beginning of a systematic investigation on plant gene functions and will promote new strategies for plant improvement.

在过去的十年中,拟南芥已成为最受青睐的植物系统,用于研究许多方面的发育和适应不利条件和疾病。拟南芥基因组的测序已接近完成,超过90%的序列已在公共数据库中发布。这是第一个被分析的植物基因组,它揭示了大量关于其包含的基因性质及其大量复制组织的信息。法国研究小组参与了拟南芥基因组学的几个步骤:EST(表达序列标签)测序,YAC(酵母人工染色体)文库的构建和排序(染色体的物理映射),基因组测序。与此同时,通过对插入突变体的系统分析,一个广泛的功能基因组学项目正在进行。这一信息为分析其他更具经济意义的植物基因组(如水稻基因组)提供了支持,并构成了对植物基因功能系统研究的开端,并将促进植物改良的新策略。
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引用次数: 0
Génomique 2000, aspects culturels 基因组学2000,文化方面
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01402-0
Patrick Charles Gabriel Triadou

As a historical consequence of molecular biology, genomics provides a complete theory of information in the field of biology. Genomics through biotechnologies offers also for the first time in history the possibility to create a new living world. Genomics can be seen as a component of actual culture that is in close connection with the economic strategies with strong political implications especially for health care and environment. This article analyses the historical determinants of genomics culture and questions the sense of the interpretations given to life by genomists. It also underlines their responsibility in elaborating this new kind of knowledge.

作为分子生物学的历史成果,基因组学在生物学领域提供了完整的信息理论。通过生物技术的基因组学在历史上第一次提供了创造一个新的生命世界的可能性。基因组学可以被看作是实际文化的一个组成部分,它与具有强烈政治含义的经济战略密切相关,特别是对卫生保健和环境。本文分析了基因组文化的历史决定因素,并对基因组学家对生命的解释提出了质疑。它还强调了他们在阐述这种新知识方面的责任。
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引用次数: 1
Expression of LSLCL, a new C-type lectin, is closely restricted, in bone marrow, to immature neutrophils LSLCL是一种新的c型凝集素,其在骨髓中的表达仅限于未成熟的中性粒细胞
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01392-0
Christophe Perrin , Jacques Bayle , Sylvie Bannwarth , Jean-François Michiels , Philippe Heudier , Jean-Claude Lefebvre , Valérie Giordanengo

In vitro, LSLCL is expressed by numerous myeloid, promyelocytic, and T or B lymphoblastoid cell lines. In vivo, LSLCL is strongly expressed in bone marrow and only faintly in lymphoid organs. We show here that, in bone marrow, LSLCL is detected: (i) concentrated in the cytoplasm of immature neutrophils but not in myeloblasts nor in mature neutrophils, (ii) in extracellular bone marrow fluid. Besides, numerous cDNAs, similar to LSLCL (identity of 93–99 %), are found in ‘expressed sequence tags’ databases from various origins, mostly fetal and undifferentiated tumour tissues. Since LSLCL and various closely related cDNAs are expressed at definite stages of cellular maturation processes, we hypothesize that this class of proteins could play an important role in the control of cellular differentiation.

在体外,LSLCL在许多髓系、早幼粒细胞和T或B淋巴母细胞样细胞系中表达。在体内,LSLCL在骨髓中强烈表达,仅在淋巴器官中微弱表达。我们在这里显示,在骨髓中,LSLCL被检测到:(i)集中在未成熟中性粒细胞的细胞质中,但不在成髓细胞和成熟中性粒细胞中,(ii)在细胞外骨髓液中。此外,在来自不同来源的“表达序列标签”数据库中发现了许多类似于LSLCL(同源性93 - 99%)的cdna,主要来自胎儿和未分化的肿瘤组织。由于LSLCL和各种密切相关的cdna在细胞成熟过程的特定阶段表达,我们假设这类蛋白可能在控制细胞分化中发挥重要作用。
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引用次数: 12
Qualité biologique de l’eau de mer évaluée in situ par le test embryo-larvaire de Crassostrea gigas et Mytilus galloprovincialis 用长尾藻和白贻贝胚胎-幼虫试验原位评价海水生物质量
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01396-8
Olivier Geffard , Edouard His , Hélène Budzinski , Matthias Seaman , Philippe Garrigues

Embryos and larvae of bivalves are frequently used in marine ecotoxicology for the purpose of assessing seawater quality, because they are very sensitive to pollutants and provide rapid responses. Laboratory studies, however, cannot accurately simulate natural conditions. We conducted bivalve embryo-larval studies in situ at the marina of Arcachon (southwest French Atlantic coast), in order to assess ‘biological quality’ of the water. One experiment conducted in winter 1999 (temperatures of 10 °C) with embryos of the Mediterranean mussel, Mytilus galloprovincialis, has shown that such tests are practicable in winter at low temperatures. This study did not show any deterioration in ‘biological quality’ of the water. Four series of experiments were subsequently performed during summer 2000 (ambient water temperatures of 19 to 22.4 °C) with embryos of the Japanese oyster, Crassostrea gigas. The results show that the ‘sea water biological quality’ deteriorates from the port entrance towards its inner part. To our knowledge, this is the first investigation of the marine environment in which bivalve embryos have been used in situ. They are very suitable for this type of study, because bivalve embryos and larvae are more sensitive to pollutants than the adults, and also because they belong to euryhaline species and the embryos tolerate summer temperatures (both species) as well as winter temperatures (mussels), allowing biomonitoring to be conducted all over the year.

由于双壳类动物的胚胎和幼虫对污染物非常敏感,反应迅速,因此在海洋生态毒理学中经常被用于评估海水质量。然而,实验室研究不能准确地模拟自然条件。为了评估水的“生物质量”,我们在Arcachon(法国西南大西洋海岸)的码头进行了双壳类胚胎-幼虫原位研究。1999年冬季(温度为10°C)对地中海贻贝(Mytilus galloprovincialis)的胚胎进行的一项实验表明,这种试验在冬季低温下是可行的。这项研究没有显示水的“生物质量”有任何恶化。随后,在2000年夏季(环境水温为19至22.4°C),用日本牡蛎(长牡蛎)的胚胎进行了四个系列的实验。结果表明,“海水生物质量”从港口入口向港口内部逐渐恶化。据我们所知,这是首次在海洋环境中原位使用双壳类胚胎的研究。它们非常适合这种类型的研究,因为双壳类动物的胚胎和幼虫比成年双壳类动物对污染物更敏感,也因为它们属于广盐物种,胚胎可以忍受夏季温度(两种物种)和冬季温度(贻贝),允许全年进行生物监测。
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引用次数: 13
Contribution des modèles expérimentaux à la compréhension de l’immunité contre la schistosomiase 实验模型对理解血吸虫病免疫的贡献
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01405-6
Christine Pierrot, Jamal Khalife, Catherine Cêtre, André Capron, Monique Capron

The discovery of a functional division in T helper cells on the basis of their cytokine secretion patterns has changed our vision of immunological responses. This dichotomy has equally shown the complexity of immune responses since there is a well orchestrated cross-regulation of cytokine production induced by viral, bacterial or parasitic pathogens. In the context of type1–type 2 cytokine pattern, mice has been universally and extensively used to associate an infectious disease according to each category in order to better understand human infections. However, with respect to schistosomiasis, immunological observations in mice have not been confirmed in humans and particularly the nature of the protective immune response. This report will consider the relevance of extrapolating from immunological studies on schistosome in experimentally infected rats to studies on naturally infected humans.

基于T辅助细胞的细胞因子分泌模式的功能性分裂的发现改变了我们对免疫反应的看法。这种二分法同样显示了免疫反应的复杂性,因为病毒、细菌或寄生病原体诱导的细胞因子产生有一个精心安排的交叉调节。在1 - 2型细胞因子模式的背景下,为了更好地了解人类感染,小鼠已被普遍和广泛地用于根据每种类别关联传染病。然而,关于血吸虫病,在小鼠中的免疫观察结果尚未在人类中得到证实,特别是保护性免疫反应的性质。本报告将考虑从实验感染大鼠的血吸虫免疫研究推断到自然感染人的研究的相关性。
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引用次数: 0
Human genome and philosophy: What ethical challenge will human genome studies bring to the medical practices in the 21st century? 人类基因组与哲学:人类基因组研究将给21世纪的医学实践带来什么样的伦理挑战?
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01400-7
Qiu Renzong

A human being or person cannot be reduced to a set of human genes, or human genome. Genetic essentialism is wrong, because as a person the entity should have self-conscious and social interaction capacity which is grown in an interpersonal relationship. Genetic determinism is wrong too, the relationship between a gene and a trait is not a linear model of causation, but rather a non-linear one. Human genome is a complexity system and functions in a complexity system of human body and a complexity of systems of natural/social environment. Genetic determinism also caused the issue of how much responsibility an agent should take for her/his action, and how much degrees of freedom will a human being have. Human genome research caused several conceptual issues. Can we call a gene ‘good’ or ‘bad’, ‘superior’ of ‘inferior’? Is a boy who is detected to have the gene of Huntington’s chorea or Alzheimer disease a patient? What should the term ‘eugenics’ mean? What do the terms such as ‘gene therapy’, ‘treatment’ and ‘enhancement’ and ‘human cloning’ mean etc.? The research of human genome and its application caused and will cause ethical issues. Can human genome research and its application be used for eugenics, or only for the treatment and prevention of diseases? Must the principle of informed consent/choice be insisted in human genome research and its application? How to protecting gene privacy and combating the discrimination on the basis of genes? How to promote the quality between persons, harmony between ethnic groups and peace between countries? How to establish a fair, just, equal and equitable relationship between developing and developed countries in regarding to human genome research and its application?

一个人不能被简化为一组人类基因或人类基因组。基因本质论是错误的,因为作为一个人,实体应该具有自我意识和社会互动能力,这些能力是在人际关系中成长起来的。基因决定论也是错误的,基因和性状之间的关系不是线性因果关系,而是非线性因果关系。人类基因组是一个复杂的系统,它在一个复杂的人体系统和一个复杂的自然/社会环境系统中发挥作用。基因决定论还引发了一个问题,即代理人应该为他/她的行为承担多少责任,以及人类将拥有多少自由度。人类基因组研究引起了几个概念上的问题。我们能说一个基因是“好”还是“坏”,是“优”还是“劣”?如果一个男孩被检测出患有亨廷顿舞蹈病或阿尔茨海默病的基因,那他就是病人吗?“优生学”这个术语应该是什么意思?“基因治疗”、“治疗”、“强化”、“克隆人”等词语是什么意思?人类基因组的研究及其应用已经并将继续引发伦理问题。人类基因组研究及其应用可以用于优生学,还是仅用于疾病的治疗和预防?在人类基因组研究及其应用中,是否必须坚持知情同意/选择的原则?如何保护基因隐私,打击基于基因的歧视?如何促进人与人之间的素质、民族之间的和谐、国家之间的和平?如何在人类基因组研究和应用方面建立发展中国家与发达国家之间公平、公正、平等、公正的关系?
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引用次数: 8
French-Chinese meeting on “Genomics 2000: Science and Mankind” organized by the Académie des Sciences de l’Institut de France and the Chinese Academy of Sciences, held in Les Pensières-Annecy (France) on May 3–6, 2000 2000年5月3日至6日,由法国科学院和中国科学院主办的“基因组学2000:科学与人类”中法学术会议在法国阿纳西(Les pensi<e:1> - annecy)举行
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01404-4
Jacques Caen
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引用次数: 0
Characterization of the murine gene for subunit VIIaL of cytochrome c oxidase 小鼠细胞色素c氧化酶亚基VIIaL基因的鉴定
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01398-1
Karine Chantrel-Groussard , Laurent Delpy , Marie-Hélène Ratinaud , Michel Cogné

Mammalian cytochrome c oxidase consists of thirteen subunits, ten encoded by the nuclear genome and three by the mitochondrial DNA. In several species, two isoforms have been isolated for nuclear-encoded subunits VIa, VIIa and VIII : an ubiquitous L (liver) form and a heart- and skeletal-muscle specific H form. The gene for murine cytochrome c oxidase subunit VIIa-L (Cox7aL) and its promoter region were isolated, sequenced and analysed. The coding region is split in four exons spanning 4.1 kbp and the promoter carries potential binding sites for Sp1, NRF1 and NRF2 transcription factors. Transcriptional activity of the promoter in reporter assays suggested an ubiquitous expression in mouse tissues.

哺乳动物细胞色素c氧化酶由13个亚基组成,其中10个由核基因组编码,3个由线粒体DNA编码。在一些物种中,已经分离出核编码亚基VIa, VIIa和VIII的两种亚型:普遍存在的L(肝脏)形式和心脏和骨骼肌特有的H形式。对小鼠细胞色素c氧化酶亚基VIIa-L (Cox7aL)基因及其启动子区进行了分离、测序和分析。编码区分为四个4.1 kbp的外显子,启动子携带Sp1、NRF1和NRF2转录因子的潜在结合位点。在报告基因分析中,启动子的转录活性表明其在小鼠组织中普遍表达。
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引用次数: 3
Expressional profiling of genes related to pollination and fertilization in rice 水稻授粉与受精相关基因的表达谱分析
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01407-X
Wei Chen, Dingzhong Tang, Jinfeng Suo, Yansheng Zhang, Yongbiao Xue

Pollination and fertilization are key steps leading to seed and fruit formation. To obtain genes involved in pollination and fertilization in rice, an RNA fingerprinting technique, cDNA-AFLP (amplified fragment length polymorphism), was used to generate transcript profiles related to pollination. Of 15 000 cDNA fragments inspected, 2 100 showed altered expression in the pollinated pistil, of which about 1/5 were up-regulated (URP) and the rest down-regulated (DRP), suggesting that gene repression is a predominant mode of gene regulation in the pollinated pistil. Over 200 URP genes were sequenced and databank searches revealed that 70 % of them represented previously unnoticed rice genes. DNA blot analysis of 20 URP genes detected no restriction fragment length polymorphisms (RFLP) between two relatively distant rice varieties, suggesting that the URP genes are highly conserved and likely play important roles in pollination and fertilization. Furthermore, two genes, URP47 and URP63, probably encoding an ADP-ribosylation factor and a membrane transporter, respectively, in relation to pollination were discussed.

授粉和受精是导致种子和果实形成的关键步骤。为了获得水稻传粉和受精相关基因,利用RNA指纹技术cDNA-AFLP(扩增片段长度多态性)生成了与传粉相关的转录本图谱。在15 000个cDNA片段中,有2 100个片段在授粉雌蕊中表达改变,其中约1/5表达上调(URP),其余表达下调(DRP),表明基因抑制是授粉雌蕊基因调控的主要模式。超过200个URP基因被测序,数据库搜索显示其中70%是以前未被注意到的水稻基因。对20个URP基因的DNA印迹分析发现,两个相对较远的水稻品种之间没有限制性片段长度多态性(RFLP),表明URP基因高度保守,可能在授粉和受精中发挥重要作用。此外,我们还讨论了两个基因URP47和URP63可能分别编码adp核糖基化因子和膜转运蛋白,它们与授粉有关。
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引用次数: 6
Le risque accidentel du piéton dans agglomération parisienne 巴黎市区行人的意外风险
Pub Date : 2001-12-01 DOI: 10.1016/S0764-4469(01)01335-X
Pierre Vayre

The risk of accident for a parisian pedestrian is of reduced frequency and of moderate severity (terrorism and natural disasters not included) according to the statistics of 1999. This is due to security measures and the excellent organisation of assistance to wounded persons. The improvement in protection of pedestrians, even the disabled and elderly persons will soon make Paris the best protected megalopolis of our continent. Pedestrians are involved in 28 % of accidents on public streets with a mortality of 1.2 %, with serious injuries in 12.6 % of the cases. Injuries without collision occur in 57 % of the cases. 18 % of the wounded older than 75 years with 1.8 % of deaths and 66 % of severe injury. Accidents related to public transportation represent a very slight risk of 0.00044 %. By modification of the concept of transportation and its materials over a five year period there is a decrease in the number of the victims (–3.75 %), in spite of the increase of accidents (3.5 %). For lone pedestrian being victims of aggression in public places, after a decrease of 10 % in 1999, there is in 2001 an increase which raises the question of police proximity again. Over a five year period the RATP (subway authority) has noticed  a 14.77 % decrease of thefts and a 54.78 % decrease in attacks… This makes the Parisian railnet (subway mostly) seven times less dangerous than the streets.

根据1999年的统计数据,巴黎行人的事故风险频率降低,严重程度适中(不包括恐怖主义和自然灾害)。这是由于安全措施和对伤员援助的出色组织。在保护行人,甚至残疾人和老年人方面的改进将很快使巴黎成为我们大陆上保护最好的大都市。行人在公共街道上发生的事故中占28%,死亡率为1.2%,严重伤害占12.6%。非碰撞伤害发生率为57%。18%的伤者年龄在75岁以上,1.8%的人死亡,66%的人重伤。与公共交通有关的事故风险非常小,为0.00044%。在五年期间,通过改变运输概念及其材料,尽管事故增加了(3.5%),但受害者人数减少了(- 3.75%)。至于在公共场所受到攻击的独自行人,在一九九九年减少了百分之十后,在二一年又增加了,这又引起了警察是否靠近的问题。在5年的时间里,巴黎地铁管理局(RATP)注意到,盗窃案减少了14.77%,袭击案减少了54.78%,这使得巴黎铁路网(主要是地铁)的危险性比街道低了7倍。
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引用次数: 3
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Comptes Rendus de l'Académie des Sciences - Series III - Sciences de la Vie
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