Pub Date : 2024-09-01Epub Date: 2024-08-06DOI: 10.1016/j.imj.2024.100126
Tze Shien Lo , Michihiko Goto , Kimberly D.P. Hammer
Background
The Alere PBP2a SA Culture Colony Test is an FDA-cleared in vitro immunochromatographic assay for rapid detection of penicillin-binding protein2a (PBP2a) in Staphylococcus aureus.
Methods
We investigated the performance of the PBP2a SA Culture Colony Test with 78 coagulase-negative Staphylococcus (CoNS) isolates from different body sites, with the Vitek 2 Antimicrobial Susceptibility Test (AST) as a reference standard.
Results
The CoNS species were 62 S. epidermidis; 6 S. lugdenensis; 3 S. hominis; 2 S. capitis; 2 S. haemolyticus; and 1 each of S. simulans, S. auricularis, and S. warneri. Of the 78 CoNS isolates, 68 showed concordance in the PBP2a IC assay and Vitek 2 AST. Discordance was seen for 10 S. epidermidis isolates, which showed negative in the PBP2a assay, despite oxacillin-resistance detection using the Vitek 2 AST (66.7% sensitivity and 100% specificity). All non-S. epidermidis CoNS were identified with 100% concordance using the PBP2a IC assay and Vitek 2 AST.
Conclusion
We demonstrated that, while the PBP2a IC assay has low sensitivity in determining the susceptibility of S. epidermidis to oxacillin, it highly accurately predicted the susceptibility of non-S. epidermidis CoNS to oxacillin. The diagnostic accuracy for non-S. epidermidis CoNS needs further assessment with more isolates to confirm our findings.
{"title":"Evaluating the performance of the Alere PBP2a SA Culture Colony Test with the Vitek 2 Antimicrobial Susceptibility Test Card System as reference standard in coagulase-negative Staphylococcus species","authors":"Tze Shien Lo , Michihiko Goto , Kimberly D.P. Hammer","doi":"10.1016/j.imj.2024.100126","DOIUrl":"10.1016/j.imj.2024.100126","url":null,"abstract":"<div><h3>Background</h3><p>The Alere PBP2a SA Culture Colony Test is an FDA-cleared <em>in vitro</em> immunochromatographic assay for rapid detection of penicillin-binding protein2a (PBP2a) in <em>Staphylococcus aureus</em>.</p></div><div><h3>Methods</h3><p>We investigated the performance of the PBP2a SA Culture Colony Test with 78 coagulase-negative <em>Staphylococcus</em> (CoNS) isolates from different body sites, with the Vitek 2 Antimicrobial Susceptibility Test (AST) as a reference standard.</p></div><div><h3>Results</h3><p>The CoNS species were 62 <em>S. epidermidis</em>; 6 <em>S. lugdenensis</em>; 3 <em>S. hominis</em>; 2 <em>S. capitis</em>; 2 <em>S. haemolyticus</em>; and 1 each of <em>S. simulans, S. auricularis,</em> and <em>S. warneri</em>. Of the 78 CoNS isolates, 68 showed concordance in the PBP2a IC assay and Vitek 2 AST. Discordance was seen for 10 <em>S. epidermidis</em> isolates, which showed negative in the PBP2a assay, despite oxacillin-resistance detection using the Vitek 2 AST (66.7% sensitivity and 100% specificity). All non-<em>S. epidermidis</em> CoNS were identified with 100% concordance using the PBP2a IC assay and Vitek 2 AST.</p></div><div><h3>Conclusion</h3><p>We demonstrated that, while the PBP2a IC assay has low sensitivity in determining the susceptibility of <em>S. epidermidis</em> to oxacillin, it highly accurately predicted the susceptibility of non-<em>S. epidermidis</em> CoNS to oxacillin. The diagnostic accuracy for non-<em>S. epidermidis</em> CoNS needs further assessment with more isolates to confirm our findings.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 3","pages":"Article 100126"},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X24000406/pdfft?md5=5e42b688ea687e5e6b0098af695bcbc1&pid=1-s2.0-S2772431X24000406-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142151847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-08-13DOI: 10.1016/j.imj.2024.100130
Yixin Liu , Xugang Wang , Qi Li , Shuo Zhu , Wenjing Zhu , Huanchun Chen , Youhui Si , Bibo Zhu , Shengbo Cao , Zikai Zhao , Jing Ye
Background
Japanese encephalitis virus (JEV) is a leading cause of viral encephalitis worldwide. JEV exhibits significant neuroinvasiveness and neurotoxicity, resulting in considerable damage to the nervous system. Japanese encephalitis is associated with high morbidity and mortality rate, seriously harming both human health and livestock production. The current lack of specific antiviral drugs means that the development of new therapeutic agents for JEV has become urgent.
Methods
Anti-JEV drugs were screened from 111 inhibitors of neurotransmitter receptor-related molecules by high content technology. The antiviral effects of clomipramine HCl were evaluated through plaque assay, real-time quantitative PCR, immunofluorescence assay and western blotting assay. Bioinformatic tools were utilized to cluster the altered signaling pathway members after clomipramine HCl treatment. Finally, the anti-JEV mechanism was deeply resolved in vivo via such molecular biology and virological detection techniques.
Results
In this study, we screened nine compounds with significant anti-JEV activity, of which clomipramine HCl demonstrated the most potent antiviral effect and exhibited dose-dependent activity. Mechanistically, clomipramine HCl may activate endoplasmic reticulum stress and modulate the unfolded protein response, thus inhibiting the assembly stage of JEV infection.
Conclusion
This study highlights the importance of clomipramine HCl as a promising approach for JEV infection protection, which may lead to new host-directed antiviral approaches to such mosquito-borne viruses.
{"title":"Screening a neurotransmitter-receptor-related inhibitor library identifies clomipramine HCl as a potential antiviral compound against Japanese encephalitis virus","authors":"Yixin Liu , Xugang Wang , Qi Li , Shuo Zhu , Wenjing Zhu , Huanchun Chen , Youhui Si , Bibo Zhu , Shengbo Cao , Zikai Zhao , Jing Ye","doi":"10.1016/j.imj.2024.100130","DOIUrl":"10.1016/j.imj.2024.100130","url":null,"abstract":"<div><h3>Background</h3><p>Japanese encephalitis virus (JEV) is a leading cause of viral encephalitis worldwide. JEV exhibits significant neuroinvasiveness and neurotoxicity, resulting in considerable damage to the nervous system. Japanese encephalitis is associated with high morbidity and mortality rate, seriously harming both human health and livestock production. The current lack of specific antiviral drugs means that the development of new therapeutic agents for JEV has become urgent.</p></div><div><h3>Methods</h3><p>Anti-JEV drugs were screened from 111 inhibitors of neurotransmitter receptor-related molecules by high content technology. The antiviral effects of clomipramine HCl were evaluated through plaque assay, real-time quantitative PCR, immunofluorescence assay and western blotting assay. Bioinformatic tools were utilized to cluster the altered signaling pathway members after clomipramine HCl treatment. Finally, the anti-JEV mechanism was deeply resolved in <em>vivo</em> via such molecular biology and virological detection techniques.</p></div><div><h3>Results</h3><p>In this study, we screened nine compounds with significant anti-JEV activity, of which clomipramine HCl demonstrated the most potent antiviral effect and exhibited dose-dependent activity. Mechanistically, clomipramine HCl may activate endoplasmic reticulum stress and modulate the unfolded protein response, thus inhibiting the assembly stage of JEV infection.</p></div><div><h3>Conclusion</h3><p>This study highlights the importance of clomipramine HCl as a promising approach for JEV infection protection, which may lead to new host-directed antiviral approaches to such mosquito-borne viruses.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 3","pages":"Article 100130"},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X24000443/pdfft?md5=aaef6a2889ea4983ae1d9f28bfc46d0d&pid=1-s2.0-S2772431X24000443-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142171850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01Epub Date: 2024-03-30DOI: 10.1016/j.imj.2024.100103
Tianyi Zhang , Li Yan , Shan Wang , Ming Chen , Yunda Jiao , Zhuoqi Sheng , Jianchao Liu , Lihua Liu
Background
Given the preventable nature of most healthcare-associated infections (HAIs), it is crucial to understand their characteristics and temporal patterns to reduce their occurrence.
Methods
A retrospective analysis of medical record cover pages from a Chinese hospital information system was conducted for surgery inpatients from 2010 to 2019. Association rules mining (ARM) was employed to explore the association between disease, procedure, and HAIs. Joinpoint models were used to estimate the annual HAI trend. The time series of each type of HAI was decomposed to analyze the temporal patterns of HAIs.
Results
The study included data from 623,290 surgery inpatients over 10 years, and a significant decline in the HAI rate was observed. Compared with patients without HAIs, those with HAIs had a longer length of stay (29 days vs. 9 days), higher medical costs (96226.57 CNY vs. 22351.98 CNY), and an increased risk of death (6.42% vs. 0.18%). The most common diseases for each type of HAI differed, although bone marrow and spleen operations were the most frequent procedures for most HAI types. ARM detected that some uncommon diagnoses could strongly associate with HAIs. The time series pattern varied for each type of HAI, with the peak occurring in January for respiratory system infections, and in August and July for surgical site and bloodstream infections, respectively.
Conclusions
Our findings demonstrate that HAIs impose a significant burden on surgery patients. The differing time series patterns for each type of HAI highlight the importance of tailored surveillance strategies for specific types of HAI.
背景鉴于大多数医疗相关感染(HAIs)都是可以预防的,因此了解其特征和时间模式对减少其发生至关重要。方法对一家中国医院信息系统中2010年至2019年外科住院患者的病历封面进行了回顾性分析。采用关联规则挖掘(ARM)来探索疾病、手术和 HAIs 之间的关联。连接点模型用于估计每年的 HAI 趋势。研究纳入了10年间623,290名手术住院患者的数据,观察到HAI率显著下降。与未发生 HAI 的患者相比,发生 HAI 的患者住院时间更长(29 天对 9 天),医疗费用更高(96226.57 元对 22351.98 元),死亡风险更高(6.42% 对 0.18%)。虽然骨髓和脾脏手术是大多数 HAI 类型中最常见的手术,但每种 HAI 类型中最常见的疾病各不相同。ARM 发现,一些不常见的诊断可能与 HAI 密切相关。每种 HAI 的时间序列模式各不相同,呼吸系统感染的高峰期出现在 1 月份,手术部位感染和血流感染的高峰期分别出现在 8 月和 7 月。每种 HAI 的时间序列模式各不相同,这凸显了针对特定类型的 HAI 采取有针对性的监控策略的重要性。
{"title":"Temporal patterns and clinical characteristics of healthcare-associated infections in surgery patients: A retrospective study in a major Chinese tertiary hospital","authors":"Tianyi Zhang , Li Yan , Shan Wang , Ming Chen , Yunda Jiao , Zhuoqi Sheng , Jianchao Liu , Lihua Liu","doi":"10.1016/j.imj.2024.100103","DOIUrl":"10.1016/j.imj.2024.100103","url":null,"abstract":"<div><h3>Background</h3><p>Given the preventable nature of most healthcare-associated infections (HAIs), it is crucial to understand their characteristics and temporal patterns to reduce their occurrence.</p></div><div><h3>Methods</h3><p>A retrospective analysis of medical record cover pages from a Chinese hospital information system was conducted for surgery inpatients from 2010 to 2019. Association rules mining (ARM) was employed to explore the association between disease, procedure, and HAIs. Joinpoint models were used to estimate the annual HAI trend. The time series of each type of HAI was decomposed to analyze the temporal patterns of HAIs.</p></div><div><h3>Results</h3><p>The study included data from 623,290 surgery inpatients over 10 years, and a significant decline in the HAI rate was observed. Compared with patients without HAIs, those with HAIs had a longer length of stay (29 days vs. 9 days), higher medical costs (96226.57 CNY vs. 22351.98 CNY), and an increased risk of death (6.42% vs. 0.18%). The most common diseases for each type of HAI differed, although bone marrow and spleen operations were the most frequent procedures for most HAI types. ARM detected that some uncommon diagnoses could strongly associate with HAIs. The time series pattern varied for each type of HAI, with the peak occurring in January for respiratory system infections, and in August and July for surgical site and bloodstream infections, respectively.</p></div><div><h3>Conclusions</h3><p>Our findings demonstrate that HAIs impose a significant burden on surgery patients. The differing time series patterns for each type of HAI highlight the importance of tailored surveillance strategies for specific types of HAI.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 2","pages":"Article 100103"},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X24000170/pdfft?md5=0f63f57f8419c21f6bc25a081e9aee3e&pid=1-s2.0-S2772431X24000170-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140407129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01Epub Date: 2024-04-19DOI: 10.1016/j.imj.2024.100113
Avishek Ghosh
Background
Vibrio cholerae N-acetylglucosamine-binding protein (GbpA) is a four-domain, secretory colonization factor which is essential for chitin utilization in the environment, as well as in adherence to intestinal cells. GbpA is also involved in inducing intestinal inflammation by enhancing mucin and interleukin-8 secretion. The underlying cell signaling mechanism involved in the induction of the pro-inflammatory response and IL-8 secretion has yet to be deciphered in detail.
Methods
Herein, the process through which GbpA triggers the induction of IL-8 in intestinal cells was investigated by examining the role of GbpA in intestinal cell line HT 29.
Results
GbpA, specifically through the fourth domain, forms a binding connection with Toll-like receptor 2 (TLR2) and additionally, recruits TLR1 along with CD14 within a lipid raft micro-domain to initiate the signaling pathway. Notably, disruption of this micro-domain complex resulted in a reduction in IL-8 secretion. The lipid raft association served as the catalyst that invoked a downstream cellular inflammatory signaling pathway. This cascade involved the activation of various MAP kinases and NFκB and assembly of the AP-1 complex. This coordinated activation of signaling molecules eventually leads to enhanced IL-8 transcription via increased promoter activity. These findings suggested that GbpA is a crucial protein in V. cholerae, capable of inciting a pro-inflammatory response during infection by orchestrating the formation of the GbpA-TLR1/2-CD14 lipid raft complex. Activation of AP-1 and NFκB in the nucleus eventually enhanced IL-8 transcription through increased promoter activity.
Conclusion
Collectively, these findings indicated that GbpA plays a pivotal role within V. cholerae by triggering a pro-inflammatory response during infection. This response is instrumented by the formation of the GbpA-TLR1/2-CD14 lipid raft complex.
{"title":"Elucidation of cellular signaling mechanism involved in Vibrio cholerae chitin-binding protein GbpA mediated IL-8 secretion in the intestinal cells","authors":"Avishek Ghosh","doi":"10.1016/j.imj.2024.100113","DOIUrl":"10.1016/j.imj.2024.100113","url":null,"abstract":"<div><h3>Background</h3><p><em>Vibrio cholerae N</em>-acetylglucosamine-binding protein (GbpA) is a four-domain, secretory colonization factor which is essential for chitin utilization in the environment, as well as in adherence to intestinal cells. GbpA is also involved in inducing intestinal inflammation by enhancing mucin and interleukin-8 secretion. The underlying cell signaling mechanism involved in the induction of the pro-inflammatory response and IL-8 secretion has yet to be deciphered in detail.</p></div><div><h3>Methods</h3><p>Herein, the process through which GbpA triggers the induction of IL-8 in intestinal cells was investigated by examining the role of GbpA in intestinal cell line HT 29.</p></div><div><h3>Results</h3><p>GbpA, specifically through the fourth domain, forms a binding connection with Toll-like receptor 2 (TLR2) and additionally, recruits TLR1 along with CD14 within a lipid raft micro-domain to initiate the signaling pathway. Notably, disruption of this micro-domain complex resulted in a reduction in IL-8 secretion. The lipid raft association served as the catalyst that invoked a downstream cellular inflammatory signaling pathway. This cascade involved the activation of various MAP kinases and NFκB and assembly of the AP-1 complex. This coordinated activation of signaling molecules eventually leads to enhanced IL-8 transcription via increased promoter activity. These findings suggested that GbpA is a crucial protein in <em>V. cholerae</em>, capable of inciting a pro-inflammatory response during infection by orchestrating the formation of the GbpA-TLR1/2-CD14 lipid raft complex. Activation of AP-1 and NFκB in the nucleus eventually enhanced IL-8 transcription through increased promoter activity.</p></div><div><h3>Conclusion</h3><p>Collectively, these findings indicated that GbpA plays a pivotal role within <em>V. cholerae</em> by triggering a pro-inflammatory response during infection. This response is instrumented by the formation of the GbpA-TLR1/2-CD14 lipid raft complex.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 2","pages":"Article 100113"},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X24000273/pdfft?md5=7703ec4ea7b38276f1055ffee7fb4b62&pid=1-s2.0-S2772431X24000273-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140774608","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In 2022, just before the COVID-19 pandemic ended, many countries noticed a viral monkeypox outbreak. Monkeypox virus, a zoonotic pathogen, causes a febrile illness in humans and resembles smallpox. Prevention strategies encompass vaccination, strict infection control measures, and avoiding contact with infected persons. As monkeypox and related poxviruses continue to pose challenges, ongoing surveillance, early diagnosis, prompt isolation, and effective control measures are crucial for limiting transmission and mitigating the impact of outbreaks on public health. This review provides valuable insights into the evolution of the monkeypox virus and its various modes of transmission, including postmortem transmission, and offers an overall perspective on the guidelines issued by the Government of India to prevent and effectively control the spread of this disease.
{"title":"Insights into the emergence and evolution of monkeypox virus: Historical perspectives, epidemiology, genetic diversity, transmission, and preventative measures","authors":"Smriti Krishna , Chhaya Kurrey , Manisha Yadav , Shakuntala Mahilkar , Subash Chandra Sonkar , Naveen Kumar Vishvakarma , Anand Sonkar , Lal Chandra , Bidhan Chandra Koner","doi":"10.1016/j.imj.2024.100105","DOIUrl":"10.1016/j.imj.2024.100105","url":null,"abstract":"<div><p>In 2022, just before the COVID-19 pandemic ended, many countries noticed a viral monkeypox outbreak. Monkeypox virus, a zoonotic pathogen, causes a febrile illness in humans and resembles smallpox. Prevention strategies encompass vaccination, strict infection control measures, and avoiding contact with infected persons. As monkeypox and related poxviruses continue to pose challenges, ongoing surveillance, early diagnosis, prompt isolation, and effective control measures are crucial for limiting transmission and mitigating the impact of outbreaks on public health. This review provides valuable insights into the evolution of the monkeypox virus and its various modes of transmission, including postmortem transmission, and offers an overall perspective on the guidelines issued by the Government of India to prevent and effectively control the spread of this disease.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 2","pages":"Article 100105"},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X24000194/pdfft?md5=5f6a35848bf4308c4aba538ba1c47380&pid=1-s2.0-S2772431X24000194-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140780587","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Fujian Province has one of the highest reported incidences of hepatitis B virus infection in China. This study aimed to provide a theoretical framework for preventing and controlling hepatitis B in Fujian Province, and to assess the trends and the spatial-temporal distribution patterns of hepatitis B in this region.
Methods
Data on hepatitis B cases were extracted from the National Notifiable Infectious Disease Surveillance System. Spatial autocorrelation analysis, trend surface analysis, and spatial-temporal scanning statistics were used to identify the spatial and aggregation patterns at the county level. The Joinpoint was used to assess the reported incidence trends.
Results
The average reported incidence of hepatitis B in Fujian from 2012 to 2021 was 14.46/10,000 population, with 583,262 notified cases. The age-adjusted reported incidence of hepatitis B decreased from 17.44/10,000 population in 2012 to 11.88/10,000 population in 2021, with an average reduction in the annual percentage change of 4.5%. There were obvious spatial-temporal aggregation characteristics in hepatitis B cases, and a high-incidence area was located in eastern Fujian. Spatio-temporal scanning statistics revealed four levels of aggregation of hepatitis B reporting rates. The first level of aggregation area included Minhou, Gulou, Jin'an, Taijiang, and nine other districts and counties.
Conclusion
The incidence of hepatitis B is declining in Fujian Province. Spatial clusters of hepatitis B cases in Fujian Province were identified, and high-risk areas in eastern Fujian still exist. Closely monitoring the general patterns in the occurrence of hepatitis B and implementing focused control and preventative strategies are important.
{"title":"Spatial-temporal analysis of hepatitis B in Fujian Province, China in 2012–2021","authors":"Shuo Yin , Shenggen Wu , Jingru Huang , Shutong Ren , Weijiang Xie , Xian'e Peng","doi":"10.1016/j.imj.2024.100110","DOIUrl":"10.1016/j.imj.2024.100110","url":null,"abstract":"<div><h3>Background</h3><p>Fujian Province has one of the highest reported incidences of hepatitis B virus infection in China. This study aimed to provide a theoretical framework for preventing and controlling hepatitis B in Fujian Province, and to assess the trends and the spatial-temporal distribution patterns of hepatitis B in this region.</p></div><div><h3>Methods</h3><p>Data on hepatitis B cases were extracted from the National Notifiable Infectious Disease Surveillance System. Spatial autocorrelation analysis, trend surface analysis, and spatial-temporal scanning statistics were used to identify the spatial and aggregation patterns at the county level. The Joinpoint was used to assess the reported incidence trends.</p></div><div><h3>Results</h3><p>The average reported incidence of hepatitis B in Fujian from 2012 to 2021 was 14.46/10,000 population, with 583,262 notified cases. The age-adjusted reported incidence of hepatitis B decreased from 17.44/10,000 population in 2012 to 11.88/10,000 population in 2021, with an average reduction in the annual percentage change of 4.5%. There were obvious spatial-temporal aggregation characteristics in hepatitis B cases, and a high-incidence area was located in eastern Fujian. Spatio-temporal scanning statistics revealed four levels of aggregation of hepatitis B reporting rates. The first level of aggregation area included Minhou, Gulou, Jin'an, Taijiang, and nine other districts and counties.</p></div><div><h3>Conclusion</h3><p>The incidence of hepatitis B is declining in Fujian Province. Spatial clusters of hepatitis B cases in Fujian Province were identified, and high-risk areas in eastern Fujian still exist. Closely monitoring the general patterns in the occurrence of hepatitis B and implementing focused control and preventative strategies are important.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 2","pages":"Article 100110"},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X24000248/pdfft?md5=20edb4c83f4c3552c72d4ed11a967f20&pid=1-s2.0-S2772431X24000248-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140786363","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01Epub Date: 2024-04-16DOI: 10.1016/j.imj.2024.100111
Yachao Hou , Xinping Liu , Ya'nan Wang , Liang Guo , Lvying Wu , Wenrong Xia , Yongqi Zhao , Weiwei Xing , Jin Chen , Changguo Chen
Background
Swift and accurate detection of Vibrio parahaemolyticus, which is a prominent causative pathogen associated with seafood contamination, is required to effectively combat foodborne disease and wound infections. The toxR gene is relatively conserved within V. parahaemolyticus and is primarily involved in the expression and regulation of virulence genes with a notable degree of specificity. The aim of this study was to develop a rapid, simple, and constant temperature detection method for V. parahaemolyticus in clinical and nonspecialized laboratory settings.
Methods
In this study, specific primers and CRISPR RNA were used to target the toxR gene to construct a reaction system that combines recombinase polymerase amplification (RPA) with CRISPR‒Cas13a. The whole-genome DNA of the sample was extracted by self-prepared sodium dodecyl sulphate (SDS) nucleic acid rapid extraction reagent, and visual interpretation of the detection results was performed by lateral flow dipsticks (LFDs).
Results
The specificity of the RPA-CRISPR/Cas13a-LFD method was validated using V. parahaemolyticus strain ATCC-17802 and six other non-parahaemolytic Vibrio species. The results demonstrated a specificity of 100%. Additionally, the genomic DNA of V. parahaemolyticus was serially diluted and analysed, with a minimum detectable limit of 1 copy/µL for this method, which was greater than that of the TaqMan-qPCR method (102 copies/µL). The established methods were successfully applied to detect wild-type V. parahaemolyticus, yielding results consistent with those of TaqMan-qPCR and MALDI-TOF MS mass spectrometry identification. Finally, the established RPA-CRISPR/Cas13a-LFD method was applied to whole blood specimens from mice infected with V. parahaemolyticus, and the detection rate of V. parahaemolyticus by this method was consistent with that of the conventional PCR method.
Conclusions
In this study, we describe an RPA-CRISPR/Cas13a detection method that specifically targets the toxR gene and offers advantages such as simplicity, rapidity, high specificity, and visual interpretation. This method serves as a valuable tool for the prompt detection of V. parahaemolyticus in nonspecialized laboratory settings.
{"title":"Establishment and application of a rapid visualization method for detecting Vibrio parahaemolyticus nucleic acid","authors":"Yachao Hou , Xinping Liu , Ya'nan Wang , Liang Guo , Lvying Wu , Wenrong Xia , Yongqi Zhao , Weiwei Xing , Jin Chen , Changguo Chen","doi":"10.1016/j.imj.2024.100111","DOIUrl":"10.1016/j.imj.2024.100111","url":null,"abstract":"<div><h3>Background</h3><p>Swift and accurate detection of <em>Vibrio parahaemolyticus</em>, which is a prominent causative pathogen associated with seafood contamination, is required to effectively combat foodborne disease and wound infections. The <em>toxR</em> gene is relatively conserved within <em>V. parahaemolyticus</em> and is primarily involved in the expression and regulation of virulence genes with a notable degree of specificity. The aim of this study was to develop a rapid, simple, and constant temperature detection method for <em>V. parahaemolyticus</em> in clinical and nonspecialized laboratory settings.</p></div><div><h3>Methods</h3><p>In this study, specific primers and CRISPR RNA were used to target the <em>toxR</em> gene to construct a reaction system that combines recombinase polymerase amplification (RPA) with CRISPR‒Cas13a. The whole-genome DNA of the sample was extracted by self-prepared sodium dodecyl sulphate (SDS) nucleic acid rapid extraction reagent, and visual interpretation of the detection results was performed by lateral flow dipsticks (LFDs).</p></div><div><h3>Results</h3><p>The specificity of the RPA-CRISPR/Cas13a-LFD method was validated using <em>V. parahaemolyticus</em> strain ATCC-17802 and six other non-parahaemolytic <em>Vibrio</em> species. The results demonstrated a specificity of 100%. Additionally, the genomic DNA of <em>V. parahaemolyticus</em> was serially diluted and analysed, with a minimum detectable limit of 1 copy/µL for this method, which was greater than that of the TaqMan-qPCR method (10<sup>2</sup> copies/µL). The established methods were successfully applied to detect wild-type <em>V. parahaemolyticus</em>, yielding results consistent with those of TaqMan-qPCR and MALDI-TOF MS mass spectrometry identification. Finally, the established RPA-CRISPR/Cas13a-LFD method was applied to whole blood specimens from mice infected with <em>V. parahaemolyticus</em>, and the detection rate of <em>V. parahaemolyticus</em> by this method was consistent with that of the conventional PCR method.</p></div><div><h3>Conclusions</h3><p>In this study, we describe an RPA-CRISPR/Cas13a detection method that specifically targets the <em>toxR</em> gene and offers advantages such as simplicity, rapidity, high specificity, and visual interpretation. This method serves as a valuable tool for the prompt detection of <em>V. parahaemolyticus</em> in nonspecialized laboratory settings.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 2","pages":"Article 100111"},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X2400025X/pdfft?md5=0efd833aa0c30f7f59c3a181b970263f&pid=1-s2.0-S2772431X2400025X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140758951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tuberculosis is a chronic infectious disease, caused by Mycobacterium tuberculosis, that seriously endangers human health. Skeletal tuberculosis is the most common type of extrapulmonary tuberculosis and tuberculous arthritis is the second most common type of skeletal tuberculosis. We report a case series of patients with tuberculous arthritis, two of whom had no joint disease in the past and presented as monoarthritis. The final patient had a history of rheumatoid arthritis, with polyarthritis that was aggravated during treatment with glucocorticoids and immunosuppressive drugs. This series of cases can contribute to early diagnosis and treatment with appropriate infection control measures.
{"title":"Mycobacterium tuberculosis joint infections: A case series","authors":"Gui Luo, Jinshui Yang, Qianqian Zhao, Jian Zhu, Jianglin Zhang, Zheng Zhao","doi":"10.1016/j.imj.2024.100107","DOIUrl":"10.1016/j.imj.2024.100107","url":null,"abstract":"<div><p>Tuberculosis is a chronic infectious disease, caused by <em>Mycobacterium tuberculosis</em>, that seriously endangers human health. Skeletal tuberculosis is the most common type of extrapulmonary tuberculosis and tuberculous arthritis is the second most common type of skeletal tuberculosis. We report a case series of patients with tuberculous arthritis, two of whom had no joint disease in the past and presented as monoarthritis. The final patient had a history of rheumatoid arthritis, with polyarthritis that was aggravated during treatment with glucocorticoids and immunosuppressive drugs. This series of cases can contribute to early diagnosis and treatment with appropriate infection control measures.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 2","pages":"Article 100107"},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X24000212/pdfft?md5=eb90e1029a7c070059c6186679c72eb3&pid=1-s2.0-S2772431X24000212-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140794552","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01Epub Date: 2024-04-06DOI: 10.1016/j.imj.2024.100106
Yanpeng Cheng , Zhen Zhang , Yuelong Shu , Lili Ren , Min Kang , Dongfeng Kong , Xiaolu Shi , Qiuying Lv , Zhigao Chen , Yinghui Li , Renli Zhang , Puxuan Lu , Yan Lu , Tingting Liu , Nixuan Chen , Huawei Xiong , Chen Du , Jun Yuan , Liang Wang , Rongqi Liu , Tiejian Feng
China has been continuously improving its monitoring methods and strategies to address key infectious diseases (KIDs). After the severe acute respiratory syndrome epidemic in 2003, China established a comprehensive reporting system for infectious diseases (IDs) and public health emergencies. The relatively lagging warning thresholds, limited warning information, and outdated warning technology are insufficient to meet the needs of comprehensive monitoring for modern KIDs. Strengthening early monitoring and warning capabilities to enhance the public health system has become a top priority, with increasing demand for early warning thresholds, information, and techniques, thanks to constant innovation and development in molecular biology, bioinformatics, artificial intelligence, and other identification and analysis technologies. A panel of 31 experts has recommended a fourth-generation comprehensive surveillance system targeting KIDs (41 notifiable diseases and emerging IDs). The aim of this surveillance system is to systematically monitor the epidemiology and causal pathogens of KIDs in hosts such as humans, animals, and vectors, along with associated environmental pathogens. By integrating factors influencing epidemic spread and risk assessment, the surveillance system can serve to detect, predict, and provide early warnings for the occurrence, development, variation, and spread of known or novel KIDs. Moreover, we recommend comprehensive ID monitoring based on the fourth-generation surveillance system, along with a data-integrated monitoring and early warning platform and a consortium pathogen detection technology system. This series of considerations is based on systematic and comprehensive monitoring across multiple sectors, dimensions, factors, and pathogens that is supported by data integration and connectivity. This expert consensus will provides an opportunity for collaboration in various fields and relies on interdisciplinary application to enhance comprehensive monitoring, prediction, and early warning capabilities for the next generation of ID surveillance. This expert consensus will serve as a reference for ID prevention and control as well as other related activities.
中国一直在不断改进重点传染病(KIDs)的监测方法和策略。2003 年严重急性呼吸系统综合征疫情发生后,中国建立了传染病(ID)和突发公共卫生事件综合报告制度。相对滞后的预警阈值、有限的预警信息、落后的预警技术,不足以满足现代 KID 全面监测的需要。随着分子生物学、生物信息学、人工智能等识别和分析技术的不断创新和发展,对预警阈值、预警信息和预警技术的要求也越来越高,加强早期监测和预警能力,提升公共卫生体系的水平已成为当务之急。一个由 31 位专家组成的小组建议针对 KID(41 种应呈报疾病和新出现的 ID)建立第四代综合监测系统。该监测系统旨在系统监测 KIDs 在人类、动物和病媒等宿主体内的流行病学和致病病原体,以及相关的环境病原体。通过整合影响流行病传播的因素和风险评估,该监测系统可用于检测、预测已知或新型 KID 的发生、发展、变异和传播,并提供预警。此外,我们还建议在第四代监测系统的基础上进行全面的 ID 监测,同时建立数据集成监测和预警平台以及病原体联合检测技术系统。这一系列考虑的基础是在数据集成和连接的支持下,对多个部门、多个维度、多个因素和病原体进行系统和全面的监测。本专家共识将为各领域的合作提供机会,并依靠跨学科应用来增强下一代 ID 监测的全面监测、预测和预警能力。本专家共识将为 ID 防控及其他相关活动提供参考。
{"title":"Expert consensus on One Health for establishing an enhanced and integrated surveillance system for key infectious diseases","authors":"Yanpeng Cheng , Zhen Zhang , Yuelong Shu , Lili Ren , Min Kang , Dongfeng Kong , Xiaolu Shi , Qiuying Lv , Zhigao Chen , Yinghui Li , Renli Zhang , Puxuan Lu , Yan Lu , Tingting Liu , Nixuan Chen , Huawei Xiong , Chen Du , Jun Yuan , Liang Wang , Rongqi Liu , Tiejian Feng","doi":"10.1016/j.imj.2024.100106","DOIUrl":"10.1016/j.imj.2024.100106","url":null,"abstract":"<div><p>China has been continuously improving its monitoring methods and strategies to address key infectious diseases (KIDs). After the severe acute respiratory syndrome epidemic in 2003, China established a comprehensive reporting system for infectious diseases (IDs) and public health emergencies. The relatively lagging warning thresholds, limited warning information, and outdated warning technology are insufficient to meet the needs of comprehensive monitoring for modern KIDs. Strengthening early monitoring and warning capabilities to enhance the public health system has become a top priority, with increasing demand for early warning thresholds, information, and techniques, thanks to constant innovation and development in molecular biology, bioinformatics, artificial intelligence, and other identification and analysis technologies. A panel of 31 experts has recommended a fourth-generation comprehensive surveillance system targeting KIDs (41 notifiable diseases and emerging IDs). The aim of this surveillance system is to systematically monitor the epidemiology and causal pathogens of KIDs in hosts such as humans, animals, and vectors, along with associated environmental pathogens. By integrating factors influencing epidemic spread and risk assessment, the surveillance system can serve to detect, predict, and provide early warnings for the occurrence, development, variation, and spread of known or novel KIDs. Moreover, we recommend comprehensive ID monitoring based on the fourth-generation surveillance system, along with a data-integrated monitoring and early warning platform and a consortium pathogen detection technology system. This series of considerations is based on systematic and comprehensive monitoring across multiple sectors, dimensions, factors, and pathogens that is supported by data integration and connectivity. This expert consensus will provides an opportunity for collaboration in various fields and relies on interdisciplinary application to enhance comprehensive monitoring, prediction, and early warning capabilities for the next generation of ID surveillance. This expert consensus will serve as a reference for ID prevention and control as well as other related activities.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 2","pages":"Article 100106"},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X24000200/pdfft?md5=ca12c7ec5fb0dd197437dde782d43ce5&pid=1-s2.0-S2772431X24000200-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140782936","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01Epub Date: 2024-05-01DOI: 10.1016/j.imj.2024.100115
Zequn Wang , Hongling Wen
Hand, foot, and mouth disease (HFMD) is one of the most common class C infectious diseases, posing a serious threat to public health worldwide. Enterovirus A71 (EV-A71) and coxsackievirus A16 (CV-A16) have been regarded as the major pathogenic agents of HFMD; however, since an outbreak caused by coxsackievirus A6 (CV-A6) in France in 2008, CV-A6 has gradually become the predominant pathogen in many regions. CV-A6 infects not only children but also adults, and causes atypical clinical symptoms such as a more generalized rash, eczema herpeticum, high fever, and onychomadesis, which are different from the symptoms associated with EV-A71 and CV-A16. Importantly, the rate of genetic recombination of CV-A6 is high, which can lead to changes in virulence and the rapid evolution of other characteristics, thus posing a serious threat to public health. To date, no specific vaccines or therapeutics have been approved for CV-A6 prevention or treatment, hence it is essential to fully understand the relationship between recombination and evolution of this virus. Here, we systematically review the genetic recombination events of CV-A6 that have occurred worldwide and explore how these events have promoted virus evolution, thus providing important information regarding future HFMD surveillance and prevention.
{"title":"A review of the recombination events, mechanisms and consequences of Coxsackievirus A6","authors":"Zequn Wang , Hongling Wen","doi":"10.1016/j.imj.2024.100115","DOIUrl":"10.1016/j.imj.2024.100115","url":null,"abstract":"<div><p>Hand, foot, and mouth disease (HFMD) is one of the most common class C infectious diseases, posing a serious threat to public health worldwide. Enterovirus A71 (EV-A71) and coxsackievirus A16 (CV-A16) have been regarded as the major pathogenic agents of HFMD; however, since an outbreak caused by coxsackievirus A6 (CV-A6) in France in 2008, CV-A6 has gradually become the predominant pathogen in many regions. CV-A6 infects not only children but also adults, and causes atypical clinical symptoms such as a more generalized rash, eczema herpeticum, high fever, and onychomadesis, which are different from the symptoms associated with EV-A71 and CV-A16. Importantly, the rate of genetic recombination of CV-A6 is high, which can lead to changes in virulence and the rapid evolution of other characteristics, thus posing a serious threat to public health. To date, no specific vaccines or therapeutics have been approved for CV-A6 prevention or treatment, hence it is essential to fully understand the relationship between recombination and evolution of this virus. Here, we systematically review the genetic recombination events of CV-A6 that have occurred worldwide and explore how these events have promoted virus evolution, thus providing important information regarding future HFMD surveillance and prevention.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 2","pages":"Article 100115"},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X24000297/pdfft?md5=c55b20e7169853252373ef4b99b3d656&pid=1-s2.0-S2772431X24000297-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141023205","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}