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TRIM52 Protects Against Doxorubicin-Induced Cardiac Inflammation, Oxidative Stress and Cardiac Injury TRIM52可预防阿霉素诱导的心脏炎症、氧化应激和心脏损伤。
IF 4.2 Pub Date : 2026-01-09 DOI: 10.1111/jcmm.71016
Zhaoxia Zhang, Hongzhen Chen, Yingchu Hu, Jiedong Zhou, Yiqi Lu, Tingsha Du, Zhenyu Jia, Jia Su, Weiping Du

Tripartite motif 52 (TRIM52) has been identified as a key regulator of inflammatory responses. However, its involvement in doxorubicin (DOX)-induced cardiotoxicity (DIC) and the underlying molecular mechanisms remain poorly understood. To investigate the functional role of TRIM52, we employed an adeno-associated virus serotype 9 (AAV9) delivery system to achieve cardiac-specific Trim52 knockout via tail-vein injection. C57BL/6 mice received intraperitoneal DOX (5 mg/kg, administered once a week, with a total cumulative dose of 15 mg/kg). Myocardial injury was evaluated by histopathological assessment and molecular profiling of cardiac tissues, complemented by in vitro mechanistic studies using neonatal mouse cardiomyocytes. In vivo and in vitro studies revealed that DOX treatment significantly upregulated TRIM52 expression. Trim52 deficiency effectively mitigated DOX-induced cardiac injury and dysfunction, concomitantly attenuating oxidative stress and inflammatory responses. Mechanistically, Trim52 deletion markedly enhanced PI3K and AKT phosphorylation, indicating that PI3K/AKT pathway activation underlies the cardioprotective effects of TRIM52 deficiency. Our findings demonstrate that TRIM52 deletion activates PI3K/AKT signalling and attenuates DOX-induced oxidative and inflammatory myocardial damage. These data identify TRIM52 as a potential therapeutic target for mitigating DIC.

Tripartite motif 52 (TRIM52)已被确定为炎症反应的关键调节因子。然而,其参与阿霉素(DOX)诱导的心脏毒性(DIC)和潜在的分子机制仍然知之甚少。为了研究TRIM52的功能作用,我们采用腺相关病毒血清型9 (AAV9)递送系统,通过尾静脉注射实现心脏特异性TRIM52敲除。C57BL/6小鼠腹腔注射DOX (5 mg/kg,每周1次,总累积剂量为15 mg/kg)。心肌损伤通过组织病理学评估和心脏组织的分子谱来评估,并辅以使用新生小鼠心肌细胞的体外机制研究。体内和体外研究显示,DOX处理显著上调TRIM52的表达。Trim52缺乏可有效减轻dox诱导的心脏损伤和功能障碍,同时减轻氧化应激和炎症反应。从机制上讲,Trim52缺失显著增强了PI3K和AKT的磷酸化,表明PI3K/AKT通路激活是Trim52缺失的心脏保护作用的基础。我们的研究结果表明,TRIM52缺失激活PI3K/AKT信号传导,减轻dox诱导的氧化和炎症性心肌损伤。这些数据确定TRIM52是缓解DIC的潜在治疗靶点。
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引用次数: 0
dock11 Knockdown in Zebrafish Disrupts Embryogenesis: Insights Into the Genetic Causes of Early Pregnancy Loss 斑马鱼dock11基因敲低会破坏胚胎发生:早期妊娠丢失的遗传原因
IF 4.2 Pub Date : 2026-01-08 DOI: 10.1111/jcmm.71017
Chang Liu, Meng Wang, Feng Chen, Mei Chen, Yonghua Yao, Wei Huang
<p>Recurrent pregnancy loss (RPL), affecting approximately 5% of couples worldwide, represents a major challenge in reproductive medicine and causes psychological distress [<span>1</span>]. While embryonic chromosomal errors account for 40%–65% of early pregnancy losses, a substantial proportion of cases remain unexplained despite extensive clinical evaluation [<span>2</span>]. This diagnostic gap is further highlighted by the observation that pregnancy losses still occur even after the transfer of euploid embryos following preimplantation genetic testing for aneuploidy (PGT-A) in assisted reproduction [<span>3</span>]. This clinical dilemma underscores a critical gap in our understanding of the molecular pathogenesis of early pregnancy loss, particularly the role of embryonic-intrinsic factors [<span>2-4</span>]. While existing research has largely centered on deficits in implantation and placental development, the critical window of early embryogenesis—a period governed by the embryo's autonomous developmental program and fundamental to embryonic survival—has received comparatively less attention [<span>5-7</span>].</p><p>Our previous multi-omics analysis of chorionic villi from euploid pregnancy-loss patients revealed epigenetic silencing of <i>DOCK11 (dedicator of cytokinesis 11)</i> and its consequent transcriptional downregulation in extra-embryonic tissues, implicating DOCK11 as a potential contributor to pregnancy failure (our unpublished data). This finding prompted us to investigate the potential intrinsic role of DOCK11 within the embryo proper.</p><p>To functionally validate the role of DOCK11 in early embryogenesis, we turned to the zebrafish model. This model is uniquely suited for such an investigation, as its external development and optical transparency enable direct visualization of embryogenesis while being free from the confounding influences of the maternal uterine environment and placental function. Morpholino (MO)-mediated knockdown of <i>dock11</i> was confirmed via a significant reduction in its mRNA levels (Figure 1A). <i>Dock11</i>-knockdown embryos exhibited markedly compromised viability, with significantly reduced hatching rates and elevated embryonic mortality compared to wild-type (WT) controls (Figure 1B,C). Detailed morphological assessment revealed a spectrum of severe developmental defects, including pronounced axial curvature, a high incidence of malformations, and reduced overall body length (Figure 1D). To determine the impact on early patterning, we further performed whole-mount in situ hybridization. Although the spatial domains of key lineage markers—including <i>gsc</i> and <i>chd</i> (dorsal mesoderm, assessed at 5 hpf), <i>bmp4</i> and <i>eve1</i> (ventral mesoderm, 5 hpf), <i>ntl</i> (axial mesoderm, assessed 8 hpf), <i>sox17</i> (endoderm, 8 hpf), and <i>gata2a</i> (ectoderm, 8 hpf) —remained largely unaltered in <i>dock11</i> MO embryos compared to WT embryos, their expression levels were markedly a
值得注意的是,虽然之前在小鼠和斑马鱼中使用dock11敲除模型的研究没有报道胚胎致命性,而是侧重于免疫和造血表型[8,9],但我们的研究侧重于dock11在早期胚胎发生中的作用。总之,我们的综合研究结果表明胚胎内在因素在妊娠丢失中的重要性。我们证明dock11在早期脊椎动物胚胎的身体模式和胚层规范中是必不可少的。因此,这项工作扩大了我们对早孕丢失的遗传病因的理解,并确立了DOCK11功能障碍是一个以前未被认识到的早孕丢失病因的机制因素。黄伟:构思、设计、指导研究,修改稿件,处理投稿。刘畅、王b孟:进行实验,收集和分析数据,起草原稿。陈峰、陈美、姚永华:协助实验。国家重点研发计划项目(2023YFC2705502)资助。四川省自然科学基金项目(2025ZNSFSC0742);本研究得到国家重点研发计划项目(2023YFC2705502)和四川省自然科学基金一般项目(2025ZNSFSC0742)的支持。本研究经四川大学华西第二大学医院伦理委员会批准(批准号:2025-51),四川大学动物实验伦理委员会批准(批准号:2025214)。所有参与者在纳入研究之前都提供了书面知情同意书。所有作者都审阅了定稿并同意发表。作者声明无利益冲突。支持本研究结果的数据可根据通讯作者的合理要求提供。
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引用次数: 0
The Effect of Multipoint Injection Strategies of BMSCs on Repairing Cartilage Defects of the Knee Joint 骨髓间充质干细胞多点注射策略在膝关节软骨缺损修复中的作用。
IF 4.2 Pub Date : 2026-01-08 DOI: 10.1111/jcmm.70978
Wang Tang, Jiaqi Li, Yu Dai, Jiaxin Liang, Lei Wan

Bone marrow-derived mesenchymal stem cells (BMSCs) are extensively utilised in tissue engineering and regenerative medicine due to their multipotent differentiation capabilities. However, the therapeutic efficacy of BMSCs is highly dependent on the transplantation route. This study aimed to compare the efficacy of commonly used BMSCs transplantation methods and identify the optimal delivery approach for cartilage repair. Our results demonstrated that all transplantation methods could significantly suppress pro-inflammatory factors, including IL-1β, iNOS, and MMP-9, while enhancing the activity of the key antioxidant enzyme superoxide dismutase (SOD). The intra-articular injection group exhibited the most substantial anti-inflammatory and antioxidant improvements. In vivo tracking experiments revealed that BMSCs from all groups were capable of homing to the cartilage defect site at 4 weeks post-modelling. Notably, the intra-articular injection group recruited the highest number of BMSCs to the defect area. Further histological analysis indicated that the joints treated with intra-articular injection displayed superior cartilage regeneration, characterised by a smooth tissue surface and coloration closely resembling adjacent native cartilage. In conclusion, while all tested BMSCs transplantation approaches contributed to cartilage repair, intra-articular injection demonstrated the most favourable therapeutic outcomes.

骨髓间充质干细胞(BMSCs)因其多能分化能力而广泛应用于组织工程和再生医学。然而,骨髓间充质干细胞的治疗效果高度依赖于移植途径。本研究旨在比较常用的骨髓间充质干细胞移植方法的疗效,并确定软骨修复的最佳递送途径。结果表明,所有移植方法均能显著抑制IL-1β、iNOS和MMP-9等促炎因子,同时增强关键抗氧化酶超氧化物歧化酶(SOD)的活性。关节内注射组表现出最显著的抗炎和抗氧化改善。体内跟踪实验显示,在造模后4周,所有组的骨髓间充质干细胞都能够归巢到软骨缺损部位。值得注意的是,关节内注射组向缺损区募集的骨髓间充质干细胞数量最多。进一步的组织学分析表明,关节内注射治疗的关节表现出良好的软骨再生,其特征是组织表面光滑,颜色与邻近的天然软骨非常相似。总之,虽然所有测试的骨髓间充质干细胞移植方法都有助于软骨修复,但关节内注射显示出最有利的治疗结果。
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引用次数: 0
ITGA2B/ITGB3-Related Macrothrombocytopenia Associated With Gain-of-Function Mutations in ITGA2B or ITGB3 Genes ITGA2B/ITGB3相关的巨血小板减少症与ITGA2B或ITGB3基因的功能获得性突变相关。
IF 4.2 Pub Date : 2026-01-08 DOI: 10.1111/jcmm.70988
Jiao Wu, Han Yan, Zijian Li, Yilin Zhu, Ruonan Shao, Honglei Xin, Tongyu Jia, Mengyu Ge, Lu Zhang, Suyu Jiang, Jianhua Mao, Jiansong Huang, Chao Fang, Xiaodong Xi, Xiaofeng Shi

Glanzmann thrombasthenia (GT) is an inherited hemorrhagic disorder characterised by impaired platelet functions, manifested clinically as spontaneous bleeding. It is usually inherited in an autosomal recessive manner. Platelet dysfunction in patients with GT is caused by quantitative and/or qualitative deficiencies in αIIbβ3, which result from mutations in the genes encoding αIIbβ3. These genetic alterations lead to platelet dysfunction characterised by impaired fibrinogen binding capacity upon agonist stimulation, defective aggregation and spreading. While classical GT typically exhibits normal platelet counts and morphology, very rare mutations in ITGA2B (encoding αIIb) and/or ITGB3 (encoding β3) cause macrothrombocytopenia or increased platelet anisotropy (heterogeneity of platelet size and morphology). This type of mutation mainly localises in the membrane-proximal region of αIIbβ3 and is inherited in an autosomal dominant manner. This particular type of disorder is called ITGA2B/ITGB3-related macrothrombocytopenia and has been considered a subset of congenital macrothrombocytopenia. Current research suggests that gain-of-function mutations in ITGA2B or ITGB3 underlie the pathogenesis of most ITGA2B/ITGB3-related macrothrombocytopenia and mechanistically distinguish it from classical GT. However, recent reports have documented non-activating ITGB3 mutations that also cause macrothrombocytopenia, presenting a profound challenge to the mechanistic understanding of ITGA2B/ITGB3-related macrothrombocytopenia. This review summarises the reported cases of gain-of-function mutations in ITGA2B and ITGB3 associated with ITGA2B/ITGB3-related macrothrombocytopenia hitherto and discusses the potential molecular pathways contributing to the unique phenotypes in ITGA2B/ITGB3-related macrothrombocytopenia.

格兰兹曼血栓减少症(GT)是一种以血小板功能受损为特征的遗传性出血性疾病,临床表现为自发性出血。它通常以常染色体隐性遗传方式遗传。GT患者血小板功能障碍是由α ib β3编码基因突变导致的α ib β3数量和/或质量缺陷引起的。这些基因改变导致血小板功能障碍,其特征是在激动剂刺激下纤维蛋白原结合能力受损,聚集和扩散缺陷。虽然经典GT通常表现出正常的血小板计数和形态,但ITGA2B(编码αIIb)和/或ITGB3(编码β3)非常罕见的突变会导致大量血小板减少症或血小板各向异性增加(血小板大小和形态的异质性)。这种类型的突变主要发生在αIIbβ3的膜近端区域,并以常染色体显性方式遗传。这种特殊类型的疾病被称为ITGA2B/ itgb3相关的巨血小板减少症,被认为是先天性巨血小板减少症的一个子集。目前的研究表明,ITGA2B或ITGB3的功能获得性突变是大多数ITGA2B/ITGB3相关大血小板减少症的发病机制的基础,并在机制上将其与经典GT区分。然而,最近的报道表明,非激活性ITGB3突变也会导致大血小板减少症,这对ITGA2B/ITGB3相关大血小板减少症的机制理解提出了深刻的挑战。本文综述了ITGA2B和ITGB3中与ITGA2B/ITGB3相关的巨血小板减少症相关的ITGA2B和ITGB3中功能获得性突变的报道病例,并讨论了ITGA2B/ITGB3相关巨血小板减少症独特表型的潜在分子途径。
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引用次数: 0
Disrupting Viral Persistence: CRISPR/Cas9-Based Strategies for Hepatitis B and C Treatment, and Challenges 破坏病毒持久性:基于CRISPR/ cas9的乙肝和丙肝治疗策略和挑战。
IF 4.2 Pub Date : 2026-01-08 DOI: 10.1111/jcmm.70986
Meng-Fan Li, Akmal Zubair, Safa Wdidi, Shan He

Hepatitis B and C viruses (HBV and HCV) remain among the leading causes of liver disease worldwide. Current antiviral drugs, such as nucleotide analogues (NAs), can reduce the replication of new HBV and HCV infections but cannot completely eliminate chronic infections. This is primarily because a stable form of viral DNA, known as covalently closed circular DNA (cccDNA), persists in liver cells and continues to sustain the infection. In recent years, the CRISPR/Cas9 gene-editing system has emerged as a powerful tool for precisely cutting and inactivating specific DNA sequences. Due to its efficiency and ease of use, researchers have applied CRISPR/Cas9 in numerous studies to directly target and disrupt the HBV genome, demonstrating promising antiviral effects in both cell cultures and animal models. Targeting multiple sites within the HBV genome has been shown to further enhance its effectiveness, paving the way for potential combination therapies aimed at disabling both cccDNA and HBV and HCV DNA integrated into the host genome. Despite its potential, CRISPR/Cas9 still faces significant challenges before clinical application, most notably the risk of off-target effects—unintended cleavage of non-target DNA sequences—and the difficulty of delivering the system efficiently into liver cells in vivo. Future progress will depend on improving the tool's precision, efficiency, flexibility and delivery methods. In this review, we explore recent advances in designing guide RNAs (gRNAs) for targeting HBV and HCV, as well as the delivery systems used to transport CRISPR/Cas9 into cells. We also discuss the remaining challenges and potential strategies for advancing CRISPR/Cas9 from the laboratory toward a viable clinical cure for HBV and HCV.

乙型和丙型肝炎病毒(HBV和HCV)仍然是世界范围内肝脏疾病的主要原因之一。目前的抗病毒药物,如核苷酸类似物(NAs),可以减少新的HBV和HCV感染的复制,但不能完全消除慢性感染。这主要是因为一种稳定形式的病毒DNA,被称为共价闭合环状DNA (cccDNA),持续存在于肝细胞中并继续维持感染。近年来,CRISPR/Cas9基因编辑系统已经成为精确切割和灭活特定DNA序列的强大工具。由于其效率和易用性,研究人员在许多研究中应用CRISPR/Cas9直接靶向和破坏HBV基因组,在细胞培养和动物模型中都显示出有希望的抗病毒效果。靶向HBV基因组内的多个位点已被证明可以进一步增强其有效性,为潜在的联合治疗铺平了道路,旨在使cccDNA和HBV和HCV DNA整合到宿主基因组中。尽管具有潜力,CRISPR/Cas9在临床应用之前仍然面临着重大挑战,最明显的是脱靶效应的风险——非靶DNA序列的意外切割——以及在体内将系统有效地输送到肝细胞中的困难。未来的进展将取决于提高工具的精度、效率、灵活性和交付方法。在这篇综述中,我们探讨了设计靶向HBV和HCV的引导rna (grna)以及用于将CRISPR/Cas9转运到细胞中的递送系统的最新进展。我们还讨论了将CRISPR/Cas9从实验室推进到HBV和HCV的可行临床治疗的剩余挑战和潜在策略。
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引用次数: 0
Causal Association Between Gut Microbiota and Sleep Apnoea Identified by Bayesian Weighted Mendelian Randomisation 通过贝叶斯加权孟德尔随机化确定肠道微生物群与睡眠呼吸暂停之间的因果关系。
IF 4.2 Pub Date : 2026-01-07 DOI: 10.1111/jcmm.70976
Chenguang Zhang, Yicong Wang, Guanghao Yue, Bin Guo

This study investigated the potential causal relationship between gut microbiota (GM) and sleep apnoea using Mendelian randomisation (MR) analysis. Summary-level genome-wide association (GWAS) data for 473 GM and sleep apnoea were obtained from the IEU Open GWAS database. A two-sample MR framework was applied to assess the potential causal effects of GM on sleep apnoea. The primary analysis was conducted using the inverse variance–weighted (IVW) method, complemented by MR-Egger regression, weighted median, weighted mode and simple mode approaches to ensure robustness. To further account for horizontal pleiotropy and weak instrument bias, Bayesian Weighted Mendelian Randomisation (BWMR) analysis was performed as a key sensitivity model. Sensitivity analyses, including heterogeneity tests and pleiotropy assessments, were conducted to evaluate the stability and reliability of the results. IVW identified 33 GM associated with sleep apnoea (p < 0.05); BWMR confirmed 24 with significant causal effects, including 10 showing negative (protective) and 14 showing positive (risk) associations. Sensitivity analyses supported robustness: MR-PRESSO indicated outlier signals in 3 GM, Cochran's Q detected heterogeneity in 5 GM, and MR-Egger intercept suggested directional pleiotropy in 3 GM; all remaining GM showed non-significant sensitivity metrics. Leave-one-out analyses showed no single SNP disproportionately influenced the estimates, reinforcing the stability of the findings. This MR study provides genetic evidence supporting a potential causal association between GM and sleep apnoea. These findings provide new insights that may inform future research and prevention strategies.

本研究使用孟德尔随机化(MR)分析调查了肠道微生物群(GM)与睡眠呼吸暂停之间的潜在因果关系。从IEU Open GWAS数据库中获得473例GM与睡眠呼吸暂停的汇总级全基因组关联(GWAS)数据。采用双样本MR框架评估转基因对睡眠呼吸暂停的潜在因果影响。初步分析采用逆方差加权(IVW)方法,辅以MR-Egger回归、加权中位数、加权众数和简单众数方法,以确保稳健性。为了进一步解释水平多效性和弱仪器偏差,贝叶斯加权孟德尔随机化(BWMR)分析作为关键敏感性模型。进行敏感性分析,包括异质性检验和多效性评估,以评估结果的稳定性和可靠性。IVW鉴定出33例与睡眠呼吸暂停相关的GM (p
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引用次数: 0
Circadian Clock Dysfunction Exacerbate Autistic-Like Behaviour and Wnt/β-Catenin Signalling Dysregulation in ASD Mice and Treatment of Melatonin ASD小鼠的生物钟功能障碍加剧自闭症样行为和Wnt/β-Catenin信号失调以及褪黑激素的治疗
IF 4.2 Pub Date : 2026-01-07 DOI: 10.1111/jcmm.70991
Yuxing Zhang, Yinan Chen, Wu Li, Liya Tang, Guangyu Wang, Jiangshan Li, Xiang Feng

Between 50% and 80% of children diagnosed with Autism Spectrum Disorder (ASD) are estimated to experience sleep disturbances, highlighting the importance of exploring the role of the circadian clock in ASD development. Previous studies have identified a potential link between Bmal1 deficiency and ASD in mouse models. In this study, we first characterise the expression patterns of circadian proteins. Subsequent behavioural tests and western blot analyses revealed that mice exposed to valproic acid (VPA) displayed autistic-like behaviours, along with altered circadian protein expression and disruption in Wnt signalling protein levels. Further studies showed that Bmal1 knockout exacerbates these behavioural changes and further impaired Wnt signalling and downstream protein expression in VPA-exposed mice. Notably, treatment with the circadian biomarker melatonin reversed Wnt downregulation and improved the behaviour deficit in VPA-exposed mice. The therapeutic effect of melatonin appears to be mediated by its regulation of the Wnt/β-catenin signalling pathway, which is linked to Bmal1-mediated circadian dysfunction. Together, our findings provide experimental evidence supporting the role of circadian dysregulation in ASD pathogenesis, highlight the therapeutic potential of melatonin in VPA-exposed mice, and suggest that Bmal1 may act as a co-activator in the Wnt-β-catenin signalling pathway.

据估计,50%至80%被诊断为自闭症谱系障碍(ASD)的儿童患有睡眠障碍,这凸显了探索生物钟在ASD发展中的作用的重要性。先前的研究已经在小鼠模型中发现了Bmal1缺陷和ASD之间的潜在联系。在这项研究中,我们首先描述了昼夜节律蛋白的表达模式。随后的行为测试和western blot分析显示,暴露于丙戊酸(VPA)的小鼠表现出自闭症样行为,同时昼夜节律蛋白表达改变和Wnt信号蛋白水平中断。进一步的研究表明,Bmal1敲除加剧了vpa暴露小鼠的这些行为变化,并进一步损害了Wnt信号传导和下游蛋白表达。值得注意的是,使用昼夜节律生物标志物褪黑激素治疗可以逆转Wnt下调,并改善vpa暴露小鼠的行为缺陷。褪黑素的治疗效果似乎是通过其对Wnt/β-catenin信号通路的调节而介导的,而Wnt/β-catenin信号通路与bmal1介导的昼夜节律障碍有关。总之,我们的研究结果为支持昼夜节律失调在ASD发病机制中的作用提供了实验证据,突出了褪黑激素在vpa暴露小鼠中的治疗潜力,并表明Bmal1可能在Wnt-β-catenin信号通路中起共同激活作用。
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引用次数: 0
Multiomics Unravelling the Mechanisms of Intratumoral Microbiota Influencing Tumorigenesis and Progression in Renal Clear Cell Carcinoma 多组学揭示肿瘤内微生物群影响肾透明细胞癌肿瘤发生和进展的机制。
IF 4.2 Pub Date : 2026-01-07 DOI: 10.1111/jcmm.71020
Keyuan Lou, Jiankun Zhang, Yuanshan Cui
<p>Renal cell carcinoma (RCC) is among the top ten most commonly diagnosed cancers globally, with clear cell renal cell carcinoma (ccRCC) accounting for the majority (70%) of RCC-related deaths [<span>1</span>]. Recent research has confirmed that the progression of ccRCC is associated with cellular metabolism within the tumour immune microenvironment [<span>2</span>]. Additionally, the intratumoral microbiota plays a pivotal role in gene regulation, oncogenesis, progression and treatment of various cancers, including ccRCC [<span>3</span>]. However, there remains a gap in academic research regarding the presence of intratumoral microbiota in ccRCC and their potential impact on tumorigenesis and progression through the regulation of certain key genes or production of specific metabolites. Therefore, based on existing surgical and immunotherapeutic approaches, exploring the fundamental mechanisms of the interaction between intratumoral microbiota and the tumour microenvironment and identifying key microbiota as potential therapeutic targets, could provide a unique therapeutic strategy for ccRCC.</p><p>This study selected 30 pairs (60 samples) of ccRCC tissues and their adjacent normal tissues for microbiota sequencing by 2bRAD-M. Among these, 20 samples were selected for transcriptome sequencing and 22 samples were subjected to metabolome sequencing. The samples were obtained from 30 patients diagnosed with ccRCC and underwent laparoscopic radical nephrectomy or laparoscopic partial nephrectomy at Yantai Yuhuangding Hospital between February 2022 and December 2023, including 23 males and 7 females. The age range of the male patients was 42 to 70 years, and that of the female patients was 37 to 71 years. The sample donors had no history of infection or antibiotic use within 4 weeks prior to surgery. Samples were rapidly frozen using liquid nitrogen and stored at −80°C until subjected to omics analysis. During the surgical procedure, the sampling, preservation and transportation were strictly conducted under sterile conditions. The tumour staging, grading and immunohistochemical results reported for the samples used in this study were all provided by the Clinical Laboratory of Yantai Yuhuangding Hospital. The sequencing and data analysis in this study were provided by OE Biotech Inc., Shanghai, China. The present study has obtained voluntarily signed informed consent forms from the participants. The protocol of this study was approved by the Ethics Committee of Yantai Yuhuangding Hospital (No. 2024-194).</p><p>The results of microbiota sequencing revealed significant differences in α and β diversity of microorganisms between cancer tissues and adjacent non-cancer tissues in 23 male and 7 female samples, demonstrating variations in the abundance and distribution of microbial communities between males and females. Postoperative pathological results indicated a notable distinction in α diversity of microbial communities within cancer tissues between 3 s
肾细胞癌(RCC)是全球十大最常诊断的癌症之一,透明细胞肾细胞癌(ccRCC)占肾癌相关死亡的大多数(70%)。最近的研究证实,ccRCC的进展与肿瘤免疫微环境[2]内的细胞代谢有关。此外,肿瘤内微生物群在包括ccRCC[3]在内的各种癌症的基因调控、肿瘤发生、进展和治疗中起着关键作用。然而,关于肿瘤内微生物群在ccRCC中的存在,以及它们通过调节某些关键基因或产生特定代谢物对肿瘤发生和进展的潜在影响,学术研究仍然存在空白。因此,在现有的手术和免疫治疗方法的基础上,探索肿瘤内微生物群与肿瘤微环境相互作用的基本机制,并确定关键微生物群作为潜在的治疗靶点,可以为ccRCC提供独特的治疗策略。本研究选取30对(60个样本)ccRCC组织及其邻近正常组织,采用2bRAD-M进行微生物群测序。其中选取20份样本进行转录组测序,22份样本进行代谢组测序。样本来自于烟台市玉皇顶医院于2022年2月至2023年12月期间诊断为ccRCC并行腹腔镜肾根治术或腹腔镜肾部分切除术的30例患者,其中男性23例,女性7例。男性42 ~ 70岁,女性37 ~ 71岁。样本供者术前4周内无感染史或抗生素使用史。样品用液氮快速冷冻,保存在- 80°C,直到进行组学分析。在手术过程中,取样、保存和运输都严格在无菌条件下进行。本研究所用样本的肿瘤分期、分级及免疫组化结果均由烟台市玉皇顶医院检验科提供。本研究的测序和数据分析由中国上海OE生物科技有限公司提供。本研究获得了参与者自愿签署的知情同意书。本研究方案经烟台玉皇顶医院伦理委员会批准(No. 2024-194)。微生物群测序结果显示,23例男性和7例女性样本的癌组织和邻近非癌组织之间的α和β微生物多样性存在显著差异,表明男性和女性之间微生物群落的丰度和分布存在差异。术后病理结果显示,3例血管肿瘤血栓与其余27例肿瘤组织内微生物群落α多样性有显著差异。肿瘤分期、血清不饱和铁结合能力以及ki67、PAX-8、vim、P504S和SDHB在肿瘤组织中的阳性率均影响肿瘤组织内微生物的β多样性。我们还通过基因本体和京都基因与基因组百科全书的功能分析,对不同群体中差异丰富的微生物进行了表征,研究了它们的相互作用网络,并预测了已知微生物基因的功能组成。对22个样本进行代谢组学测序,揭示了肿瘤组织与邻近组织之间代谢物主成分分析(PCA)结果的分离,以及肿瘤分期、分级、性别、是否存在血管肿瘤血栓和ki67阳性分组。这些发现表明在比较组之间代谢物存在差异。此外,我们筛选了不同群体的差异代谢物,确定了代谢物相关的信号通路,并对代谢物浓度随时间的变化进行了趋势分析。对20个样本进行转录组测序,研究癌组织与邻近非癌组织之间的基因表达差异,以及按肿瘤分期、分级、性别和ki67阳性程度分层的组内基因表达差异。我们在这些组内和组间寻找独特和共同的差异基因,并预测其相关的信号传导途径。此外,我们还进行了转录因子和靶基因预测分析,以及蛋白-蛋白相互作用网络分析,以系统地探索这些差异基因的功能(图1)。本研究旨在探讨不同性别肾脏微生物群落的差异,探讨特定微生物是否通过产生某些代谢物影响基因表达,从而影响ccRCC的发生和进展。
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引用次数: 0
Integrative Bioinformatics Reveals Novel Molecular Mechanisms and Therapeutic Targets in Acute Myeloid Leukaemia 综合生物信息学揭示急性髓性白血病的新分子机制和治疗靶点。
IF 4.2 Pub Date : 2026-01-06 DOI: 10.1111/jcmm.71007
Muteb Muyey Daniel, Gradel Holel Andwey

Acute myeloid leukaemia (AML) is a genetically heterogeneous malignancy associated with poor prognosis and limited treatment options. To identify molecular programs conserved across AML subtypes and perturbations, we analysed three RNA sequencing datasets that captured venetoclax treatment under metabolic stress and the knockdown of chromatin regulators (PSPC1, JMJD1C, and RUNX1). Differential expression analysis was performed using DESeq2, followed by functional enrichment and network analyses. An independent AML cell line dataset was used to validate results. We identified a conserved 73-gene transcriptional signature that is consistently dysregulated across perturbations, characterised by the overexpression of CDKN1A, PHGDH, and ALDH1L2, and the downregulation of MYC and E2F targets. Functional analyses implicated cell cycle arrest, metabolic reprogramming, oxidative stress responses, and suppression of proliferative and biosynthetic pathways. PSPC1 emerged as a central hub linking chromatin remodelling to metabolic adaptation. Translational validation in the TCGA-LAML cohort revealed that higher 73-gene enrichment scores were associated with inferior overall survival, and stratification by hub gene expression recapitulated adverse prognostic trends. Collectively, these findings define a stress-adaptive transcriptional program conserved across diverse AML perturbations, providing mechanistic insights into the coupling of metabolism and the cell cycle, and potential therapeutic vulnerabilities. Incorporation of this 73-gene program into patient stratification frameworks may guide biomarker-driven therapies and combination strategies targeting metabolic and apoptotic stress responses.

急性髓性白血病(AML)是一种遗传异质性恶性肿瘤,预后差,治疗选择有限。为了确定跨AML亚型和扰动保守的分子程序,我们分析了三个RNA测序数据集,这些数据集捕获了代谢应激和染色质调节因子(PSPC1, JMJD1C和RUNX1)敲低下venetoclax治疗的情况。使用DESeq2进行差异表达分析,然后进行功能富集和网络分析。使用独立的AML细胞系数据集来验证结果。我们发现了一个保守的73个基因转录特征,该特征在各种扰动中持续失调,其特征是CDKN1A、PHGDH和ALDH1L2的过表达,以及MYC和E2F靶点的下调。功能分析涉及细胞周期阻滞、代谢重编程、氧化应激反应以及增殖和生物合成途径的抑制。PSPC1是连接染色质重塑与代谢适应的中心枢纽。在TCGA-LAML队列中的翻译验证显示,较高的73基因富集评分与较差的总生存期相关,hub基因表达分层重现了不良预后趋势。总的来说,这些发现定义了在不同AML扰动中保守的应激适应性转录程序,为代谢和细胞周期耦合以及潜在的治疗脆弱性提供了机制见解。将这73个基因程序纳入患者分层框架可以指导生物标志物驱动的治疗和针对代谢和凋亡应激反应的联合策略。
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引用次数: 0
First LDLRAP1 and Recurrent LDLR Mutations in Tunisian Families With Familial Hypercholesterolemia 突尼斯家族性高胆固醇血症家族的首次LDLRAP1和复发性LDLR突变
IF 4.2 Pub Date : 2026-01-05 DOI: 10.1111/jcmm.70997
Wirath Ben Ncir, Afif Ben-Mahmoud, Hamdi Frikha, Fatma Abdelhedi, Faten Hadj Kacem, Nabila Majdoub, Mouna Mnif, Hyung-Goo Kim, Leila Ammar Keskes, Jouke-Jan Hottenga

Familial hypercholesterolemia (FH) is a genetic disorder characterised by elevated plasma LDL-cholesterol, predisposing to premature atherosclerotic cardiovascular disease. Most cases follow an autosomal dominant pattern (ADH) caused by pathogenic variants in LDLR, APOB or PCSK9. In contrast, the rare autosomal recessive form (ARH) results from biallelic mutations in LDLRAP1, leading to defective LDL receptor-mediated endocytosis. Despite the high rate of consanguinity in Tunisia, LDLRAP1 variants have not yet been reported in this population. In this study, Whole Exome Sequencing of two consanguineous Tunisian families, identified distinct pathogenic variants. In the first family (FH-A), a recurrent LDLR splice-site variant (c.1845+1G>A) was detected in both heterozygous and homozygous states, consistent with an autosomal dominant inheritance pattern. In the second family (FH-B), a novel homozygous LDLRAP1 missense variant (c.161G>A; p.Gly54Asp) was identified, confirming autosomal recessive inheritance. In silico analyses using MutationTaster, DynaMut2, MUpro, DDGun, NetSurfP-2.0, ConSurf and PyMOL predicted that the p.Gly54Asp substitution destabilises the PTB domain of LDLRAP1 by disrupting key hydrogen bonds and hydrophobic interactions, thereby likely impairing LDLR internalisation. According to ACMG guidelines, this variant is classified as likely pathogenic. Clinically, ARH patients exhibited early-onset xanthomas and an unusual quadricuspid aortic valve (QAV). Targeted analysis of valvulogenesis genes (NOTCH1, GATA4, NKX2-5, TBX5, AGTR1, BMP2) revealed no co-segregating pathogenic variants, suggesting that QAV may result from embryonic LDL accumulation disrupting Notch1 signalling rather than a monogenic defect. Comparison with other ADH Tunisian families carrying the same LDLR mutation showed phenotypic variability, likely influenced by genetic modifiers, treatment response and environmental factors. These findings provide the first evidence of LDLRAP1-associated ARH in Tunisia and highlight the genetic heterogeneity of FH, emphasising the importance of integrating molecular, structural and functional analyses for accurate diagnosis, personalised management and early prevention.

家族性高胆固醇血症(FH)是一种以血浆ldl -胆固醇升高为特征的遗传性疾病,易导致过早的动脉粥样硬化性心血管疾病。大多数病例遵循由LDLR、APOB或PCSK9致病变异引起的常染色体显性模式(ADH)。相反,罕见的常染色体隐性形式(ARH)是由LDLRAP1的双等位基因突变引起的,导致LDL受体介导的内吞作用缺陷。尽管在突尼斯有很高的血缘关系,但LDLRAP1变异尚未在该人群中报道。在这项研究中,两个突尼斯近亲家庭的全外显子组测序,确定了不同的致病变异。在第一家族(FH-A)中,在杂合和纯合状态下均检测到复发性LDLR剪接位点变异(c.1845+1G> a),符合常染色体显性遗传模式。在第二个家族(FH-B)中,发现了一种新的纯合子LDLRAP1错义变异(c.161G> a; p.Gly54Asp),证实了常染色体隐性遗传。利用MutationTaster、DynaMut2、MUpro、DDGun、NetSurfP-2.0、ConSurf和PyMOL进行的硅分析预测,p.Gly54Asp取代通过破坏关键氢键和疏水相互作用破坏LDLRAP1的PTB结构域的稳定性,从而可能损害LDLR的内化。根据ACMG指南,这种变异被归类为可能致病。临床上,ARH患者表现为早发性黄瘤和不寻常的四尖瓣主动脉瓣(QAV)。对瓣膜发生基因(NOTCH1, GATA4, NKX2-5, TBX5, AGTR1, BMP2)的靶向分析显示,没有共分离的致病变异,这表明QAV可能是由胚胎LDL积累破坏NOTCH1信号而不是单基因缺陷引起的。与携带相同LDLR突变的其他ADH突尼斯家庭相比,显示出表型变异,可能受到遗传修饰剂、治疗反应和环境因素的影响。这些发现提供了突尼斯ldlrap1相关ARH的第一个证据,并强调了FH的遗传异质性,强调了整合分子、结构和功能分析对准确诊断、个性化管理和早期预防的重要性。
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