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Recent Developments on the Synthesis of Oxygen- and Sulfur-containing Heterocycles and their Derivatives under Visible Light Induced Reactions. 在可见光诱导反应下合成含氧和含硫杂环及其衍生物的最新进展。
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115680266313243240624071549
Tubai Ghosh, Sougata Santra, Grigory V Zyryanov, Brindaban C Ranu

Visible-light-mediated reactions have recently emerged as a powerful strategy for the synthesis of diverse organic molecules under mild reaction conditions. Usually, the reactions are performed at room temperature and thus sensitive functional groups remain unaffected. Thus, this protocol has received intense interest from academia as well as industries. The heterocycles, in general, are of much interest because of their biological activities and application in therapeutics. The Oxygen- and Sulfur-containing heterocyclic compounds have recently attracted attention as these compounds showed promising activities as anti-cancer drugs, antibiotics, antifungal and anti-inflammatory agents among other applications. The synthesis of this class of compounds by efficient and greener routes has become an important target. This review highlights the various procedures for the synthesis of these compounds and their derivatives under visible light-induced reactions. The green aspects and mechanism of each procedure have been discussed.

近来,以可见光为媒介的反应已成为在温和的反应条件下合成各种有机分子的有力策略。反应通常在室温下进行,因此敏感的官能团不会受到影响。因此,这种方法受到了学术界和工业界的强烈关注。一般来说,杂环化合物因其生物活性和在治疗学中的应用而备受关注。最近,含氧和含硫杂环化合物引起了人们的关注,因为这些化合物在抗癌药物、抗生素、抗真菌剂和抗炎剂等方面的应用前景广阔。通过高效、绿色的路线合成这类化合物已成为一个重要目标。本综述重点介绍了在可见光诱导反应下合成这类化合物及其衍生物的各种方法。文中还讨论了每种方法的绿色方面和机理。
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引用次数: 0
Synthesis of Isatin-derived Heterocycles with Promising Anticancer Activities. 合成具有良好抗癌活性的伊沙廷衍生杂环。
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115680266311332240722065652
Bubun Banerjee, Aditi Sharma, Arvind Singh, Manmeet Kaur, Anu Priya

Isatin or 1H-indole-2,3-dione skeleton has been playing a significant role in drug design and development. Isatin itself and many of its derivatives are widely distributed in naturally occurring bioactive compounds. Various synthetic isatin derivatives were found to possess a broad range of significant pharmacological efficacies especially anti-cancer activity against a wide variety of cancer cell lines. Interestingly, on a few occasions, some isatin-derived scaffolds were reported as more potent than the tested reputed drug molecules. As a result, isatin-derived compounds have been gaining significant attention in cancer-based drug developments. In this review, we have summarized literature reported during the last two decades related to the synthesis of structurally diverse isatin-derived scaffolds with promising anti-cancer activities.

伊沙替丁或 1H-吲哚-2,3-二酮骨架在药物设计和开发中一直发挥着重要作用。伊沙替丁本身及其许多衍生物广泛分布于天然生物活性化合物中。研究发现,各种人工合成的伊沙替丁衍生物具有广泛而显著的药理作用,尤其是对多种癌细胞株具有抗癌活性。有趣的是,据报道,在少数情况下,一些由伊沙替丁衍生的支架比经过测试的知名药物分子更有效。因此,伊沙替丁衍生化合物在基于癌症的药物开发中获得了极大的关注。在这篇综述中,我们总结了过去二十年中有关合成具有抗癌活性的结构多样的伊沙替丁衍生支架的文献。
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引用次数: 0
Role of Plant Materials with Anti-inflammatory Effects in Phytotherapy of Osteoarthritis. 具有抗炎作用的植物材料在骨关节炎植物疗法中的作用
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115680266297662240527105450
Malgorzata Geszke-Moritz, Gerard Nowak, Michał Moritz, Barbara Feist, Jacek E Nycz

Osteoarthritis (OA) is a common chronic articular degenerative disease characterized by articular cartilage degradation, synovial inflammation/immunity, and subchondral bone lesions. Recently, increasing interest has been devoted to treating or preventing OA with herbal medicines. The mechanism of action of plant raw materials used in osteoarthrosis treatment is well documented. They are sought after because of the high frequency of inflammation of the knee joint among both elderly and young people engaged in sports in which their knee joints are often exposed to high-stress conditions. The purpose of this work was to present some most effective and safe plant medicines with proven mechanisms of action that can help to alleviate the growing social problem of osteoarthrosis caused in recent years. A review of the available literature based primarily on the latest editions of ESCOP and EMA monographs and the latest scientific papers has made it possible to select and propose medical management of osteoarthrosis by ranking plant medicines according to their effectiveness. Clinical studies of raw plant materials, such as Harpagophyti radix, Olibanum indicum, and Urticae foliumet herba have indicated that these drugs should be considered the first choice in osteoarthrosis treatment. The efficacy of Rosae pseudo-fructus, Salicis cortex, Filipendulae ulmariae flos et herba, Ribis nigri folium, and externally applied Capsici fructus and Symphyti radix, has also been proven by pharmacological studies. All the plant medicines mentioned in the paper have been studied in detail in terms of their phytochemistry, which can help doctors in their decisionmaking in the treatment of osteoarthrosis.

骨关节炎(OA)是一种常见的慢性关节退行性疾病,以关节软骨退化、滑膜炎症/免疫和软骨下骨病变为特征。最近,人们越来越关注用中草药治疗或预防 OA。用于骨关节病治疗的植物原料的作用机理已得到充分证实。由于从事体育运动的老年人和年轻人膝关节经常处于高应力状态下,因此膝关节炎症的发病率很高,植物原料也因此受到追捧。这项工作的目的是介绍一些最有效、最安全的植物药,它们的作用机制已得到证实,有助于缓解近年来日益严重的骨关节病社会问题。主要根据最新版的 ESCOP 和 EMA 专论以及最新的科学论文,对现有文献进行了审查,从而根据植物药的有效性进行排序,选择并提出了骨关节病的医疗管理建议。对 Harpagophyti radix、Olibanum indicum 和 Urticae foliumet herba 等植物原料的临床研究表明,这些药物应被视为骨关节病治疗的首选。Rosae pseudo-fructus、Salicis cortex、Filipendulae ulmariae flos et herba、Ribis nigri folium 以及外敷的 Capsici fructus 和 Symphyti radix 的疗效也已通过药理学研究得到证实。本文提到的所有植物药都经过了详细的植物化学研究,可以帮助医生在治疗骨关节病时做出决策。
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引用次数: 0
Recent Advances in Nanocatalyzed One-Pot Sustainable Synthesis of Bioactive N, N-Heterocycles with Anticancer Activities: An Outlook of Medicinal Chemistry. 纳米催化一锅可持续合成具有抗癌活性的生物活性 N, N-杂环的最新进展:药物化学展望》。
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115680266311149240822111827
Sasadhar Majhi

N-heterocycles represent a predominant and unique class of organic chemistry. They have received a lot of attention due to their important chemical, biomedical, and industrial uses. Food and Drug Administration (FDA) approved about 75% of drugs containing N-based heterocycles, which are currently available in the market. N-Heterocyclic compounds exist as the backbone of numerous natural products and act as crucial intermediates for the construction of pharmaceuticals, veterinary items, and agrochemicals frequently. Among N-based heterocyclic compounds, bioactive N,N-heterocycles constitute a broad spectrum of applications in modern drug discovery and development processes. Cefozopran (antibiotic), omeprazole (antiulcer), enviradine (antiviral), liarozole (anticancer), etc., are important drugs containing N,N-heterocycles. The synthesis of N,N-heterocyclic compounds under sustainable conditions is one of the most active fields because of their significant physiological and biological properties as well as synthetic utility. Current research is demanding the development of greener, cheaper, and milder protocols for the synthesis of N,N-heterocyclic compounds to save mother nature by avoiding toxic metal catalysts, extensive application of energy, and the excessive use of hazardous materials. Nanocatalysts play a profound role in sustainable synthesis because of their larger surface area, tiny size, and minimum energy; they are eco-friendly and safe, and they provide higher yields with selectivity in comparison to conventional catalysts. It is increasingly demanding research to design and synthesize novel bioactive compounds that may help to combat cancer since the major causes of death worldwide are due to cancer. Hence, the important uses of nanocatalysts for the one-pot synthesis of biologically potent N,N-heterocycles with anticancer activities have been presented in this review.

N-heterocycles 是有机化学中最主要、最独特的一类化合物。由于其重要的化学、生物医学和工业用途,它们受到了广泛关注。美国食品和药物管理局(FDA)批准了约 75% 含有 N 型杂环的药物,这些药物目前已在市场上销售。N 型杂环化合物是众多天然产物的骨架,也是制造药品、兽药和农用化学品的重要中间体。在 N 基杂环化合物中,具有生物活性的 N,N-杂环化合物在现代药物发现和开发过程中有着广泛的应用。头孢唑喃(抗生素)、奥美拉唑(抗溃疡)、恩维拉定(抗病毒)、利阿罗唑(抗癌)等都是含有 N,N-杂环的重要药物。在可持续条件下合成 N,N-三环化合物是最活跃的领域之一,因为它们具有重要的生理和生物特性以及合成用途。目前的研究要求开发更环保、更便宜、更温和的 N,N-杂环化合物合成方案,以避免使用有毒金属催化剂、大量使用能源和过量使用有害物质,从而拯救大自然。纳米催化剂在可持续合成中发挥着深远的作用,因为它们具有更大的表面积、极小的尺寸和最低的能耗;与传统催化剂相比,它们既环保又安全,还能提供更高的产率和选择性。由于癌症是导致全球死亡的主要原因,因此设计和合成有助于抗癌的新型生物活性化合物的研究要求越来越高。因此,本综述介绍了纳米催化剂在一锅合成具有抗癌活性的生物强效 N,N-杂环方面的重要用途。
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引用次数: 0
Hydroxamic Acids Derivatives: Greener Synthesis, Antiureolytic Properties and Potential Medicinal Chemistry Applications - A Concise Review. 羟肟酸衍生物:更绿色的合成、抗利尿特性和潜在的药物化学应用--简明综述。
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115680266322401241021073138
Luciana P S Viana, Luan R Pinheiro, Lorenzo W Petrillo, Isabela G Medeiros, Taina G Rizo, Luzia V Modolo, Cleiton M da Silva, Ângelo de Fatima

Hydroxamic acids (HAs) are chemical compounds characterized by the general structure RCONR'OH, where R and R' can denote hydrogen, aryl, or alkyl groups. Recognized for their exceptional chelating capabilities, HAs can form mono or bidentate complexes through oxygen and nitrogen atoms, rendering them remarkably versatile. These distinctive structural attributes have paved the way for a broad spectrum of medicinal applications for HAs, among which their pivotal role as inhibitors of essential Ni(II) and Zn(II)-containing metalloenzymes. In 1962, a significant breakthrough occurred when Kobashi and colleagues identified hydroxamic acids (HAs) as potent urease inhibitors. Subsequent research has increasingly underscored their capability in combatting infections induced by ureolytic microorganisms, including Helicobacter pylori and Proteus mirabilis. However, comprehensive reviews exploring their potential applications in treating infections caused by ureolytic microorganisms remain scarce in the scientific literature. Thus, this minireview aims to bridge this gap by offering a systematic exploration of the subject. Furthermore, it seeks to explore the significant advancements in obtaining hydroxamic acid derivatives through environmentally sustainable methodologies.

羟肟酸(HAs)是一种化合物,其一般结构为 RCONR'OH,其中 R 和 R'可表示氢、芳基或烷基。羟肟酸具有出色的螯合能力,可以通过氧原子和氮原子形成单齿或双齿络合物,因此用途非常广泛。这些与众不同的结构特性为 HAs 的广泛医药应用铺平了道路,其中 HAs 作为含 Ni(II)和 Zn(II)金属酶的重要抑制剂发挥了关键作用。1962 年,小桥及其同事发现羟肟酸 (HAs) 是一种有效的尿素酶抑制剂,这是一项重大突破。随后的研究越来越多地强调了羟肟酸在对抗幽门螺旋杆菌和奇异变形杆菌等尿素分解微生物诱导的感染方面的能力。然而,在科学文献中,探讨它们在治疗尿解微生物引起的感染中的潜在应用的全面综述仍然很少。因此,本微型综述旨在通过对这一主题的系统探讨来弥补这一空白。此外,它还试图探讨通过环境可持续方法获得羟肟酸衍生物的重大进展。
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引用次数: 0
Green Synthesis of Biorelevant Scaffolds through Organocatalytic/ Enzymatic Dynamic Kinetic Resolution. 通过有机催化/酶动态动力学解析绿色合成生物相关支架。
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115680266294434240322043536
Helene Pellissier

This review highlights major developments in the application of green organocatalytic and enzymatic dynamic kinetic resolutions (DKRs) in the total synthesis of biorelevant scaffolds. It illustrates the diversity of useful bioactive products and intermediates that can be synthesized under greener and more economic conditions through the combination of the powerful concept of DKR, which allows the resolution of racemic compounds with up to 100% yield, with either asymmetric organocatalysis or enzymatic catalysis, avoiding the use of toxic and expensive metals. With the need for more ecologic synthetic technologies, this field will undoubtedly expand its scope in the future with the employment of other organocatalysts/enzymes to even more types of transformations, thus allowing powerful greener and more economic strategies to reach other biologically important molecules.

本综述重点介绍了在生物相关支架的全合成中应用绿色有机催化和酶动态动力学解析(DKR)的主要进展。它说明了通过结合 DKR 这一强大的概念,可以在更绿色、更经济的条件下合成出多种有用的生物活性产品和中间体。DKR 可以通过不对称有机催化或酶催化解决外消旋化合物,收率高达 100%,同时避免使用有毒和昂贵的金属。随着人们对更生态的合成技术的需求,这一领域无疑将在未来扩大其范围,利用其他有机催化剂/酶进行更多类型的转化,从而以更环保、更经济的策略获得其他重要的生物分子。
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引用次数: 0
Neuroactive Phytoconstituents of Glycyrrhiza glabra for the Treatment of Alzheimer's Disease. 甘草神经活性成分对阿尔茨海默病的治疗作用。
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-12-26 DOI: 10.2174/0115680266357793241223100307
Mansi Verma, Mohd Usman Ms, Niraj Kumar Singh

Alzheimer's Disease (AD), a prevalent neurodegenerative disorder, poses a significant global health challenge with complicated pathogenesis. Pathological characteristics of AD include increasing loss of cholinergic neurons, oxidative stress, mitochondrial dysfunction, and amyloid beta accumulation. Due to the limited availability of effective therapeutic options with only symptomatic relief and their severe adverse effects, there is a significant need to search and explore new agents for the management of AD. Recently, natural products and/or phytoconstituents of plants have gained notable attention as potential sources of neuroprotective agents due to their diverse chemical constituents, mechanism of action, and relatively safe profiles. In view of this, Glycyrrhiza glabra has been recognized for its several therapeutic properties in traditional medicine systems for centuries. Further, neuroactive phytoconstituents of this plant, including glycyrrhizin, liquiritigenin, isoliquiritigenin, glabridin, and glycyrrhizic acid, exhibit significant pharmacological advantages along with potential neuroprotective effects against AD. Glycyrrhiza glabra and its phytoconstituents have gained significant interest due to its ability to exert a neuroprotective impact by influencing multiple signaling pathways, inhibiting AChE and BACE1 activity, reducing Aβ accumulation, plaque formation, and tau phosphorylation, and quenching the free radical in experimentally-induced AD-like brain. The present review summarizes available in vitro and in vivo preclinical studies that have been performed to evaluate the beneficial neuroprotective effect of Glycyrrhiza glabra and its phytoconstituents against AD-like pathology. Based on available facts, it can be concluded that neuroactive phytoconstituents of Glycyrrhiza glabra could be significant lead molecules for the drug discovery of anti-AD medicines in the future.

阿尔茨海默病(AD)是一种常见的神经退行性疾病,发病机制复杂,对全球健康构成重大挑战。阿尔茨海默病的病理特征包括胆碱能神经元的日益丧失、氧化应激、线粒体功能障碍和淀粉样蛋白 beta 的积累。由于有效的治疗方案有限,只能缓解症状,且不良反应严重,因此亟需寻找和探索治疗 AD 的新药物。最近,天然产品和/或植物中的植物成分因其化学成分的多样性、作用机制和相对安全的特性,作为神经保护剂的潜在来源受到了广泛关注。有鉴于此,几个世纪以来,甘草在传统医学体系中的多种治疗特性已得到认可。此外,这种植物的神经活性植物成分,包括甘草苷、liquiritigenin、isisiquiritigenin、glabridin 和甘草酸,具有显著的药理优势和潜在的神经保护作用,可预防注意力缺失症。甘草及其植物成分能够通过影响多种信号通路、抑制 AChE 和 BACE1 活性、减少 Aβ 积累、斑块形成和 tau 磷酸化,以及淬灭实验诱导的 AD 样脑中的自由基来发挥神经保护作用,因而备受关注。本综述总结了现有的体外和体内临床前研究,这些研究评估了甘草及其植物成分对类似 AD 病理学的有益神经保护作用。根据现有的事实,可以得出结论,甘草中具有神经活性的植物成分可能是未来抗注意力缺失症药物研发的重要先导分子。
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引用次数: 0
Thymol-Loaded Zinc Ferrite Nanoparticles: A Novel Carrier for Enhanced Antimicrobial and Antibiofilm Activity against M. smegmatis through ROS-Mediated Mechanism. 胸腺酚负载锌铁氧体纳米粒子:一种通过 ROS 媒介机制增强对 M. smegmatis 抗菌和抗生物膜活性的新型载体。
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-12-16 DOI: 10.2174/0115680266348684241211072446
Bhabani Shankar Das, Ashirbad Saragi, Lipsa Leena Panigrahi, Sunita Nayak, Manoranjan Arakha, Debapriya Bhattacharya

Introduction/objective: Tuberculosis (TB) remains a persistent global health challenge, with an increasing incidence of cases and limitations in current treatment strategies. Traditional therapy involves long drug treatments that can cause side effects and lead to drug-resistant strains, making treatment less effective. This study aimed to explore the therapeutic potential of a novel nanoparticle-based delivery system for Thymol (THY), a natural antibacterial bioactive molecule, to combat Mycobacterium smegmatis, a model organism for Mycobacterium tuberculosis.

Methods: A nanoparticle-based delivery system was developed using biocompatible Thymolconjugated Chitosan Zinc Ferrite Nanoparticles (THY-CH-ZnFe2O4 NPs). The nanoconjugates were characterized for their morphological and chemical properties.

Results: The characterization of synthesised nanoparticles showed THY-CH-ZnFe2O4 NPs to exhibit enhanced biocompatibility and antibacterial activity against M. smegmatis compared to THY alone. The nanoconjugates induced Reactive Oxygen Species (ROS)-mediated damage to the bacterial cell membrane, effectively inhibiting bacterial replication, dormancy, and biofilm formation. Additionally, the nanoconjugates demonstrated low cytotoxicity towards the human kidney cell line.

Conclusion: The study's findings highlighted a new direction for developing nanoparticle-based antimycobacterial agents with a wide application in treating TB and other bacterial diseases. The THY-CH-ZnFe2O4 NPs show promise as a safe and effective therapeutic agent, offering a potential solution to the limitations of current TB treatment strategies.

前言/目标:结核病(TB)仍然是一个持续存在的全球健康挑战,病例发病率不断上升,目前的治疗策略存在局限性。传统的治疗方法包括长期的药物治疗,这可能会产生副作用,并导致耐药菌株,使治疗效果降低。本研究旨在探索一种基于纳米粒子的新型百里香酚(THY)递送系统的治疗潜力,Thymol是一种天然抗菌生物活性分子,可以对抗耻垢分枝杆菌(Mycobacterium耻垢分枝杆菌),一种结核分枝杆菌的模式生物。方法:采用生物相容性胸腺缀合壳聚糖铁酸锌纳米粒子(THY-CH-ZnFe2O4 NPs)制备了一种基于纳米粒子的递送系统。对纳米缀合物的形态和化学性质进行了表征。结果:合成的纳米粒子表征表明,与单独使用THY相比,THY- ch - znfe2o4纳米粒子具有更强的生物相容性和抗菌活性。纳米缀合物诱导活性氧(ROS)介导的细菌细胞膜损伤,有效抑制细菌的复制、休眠和生物膜的形成。此外,纳米缀合物对人肾细胞系显示出低的细胞毒性。结论:本研究结果为开发基于纳米颗粒的抗细菌药物提供了新的方向,可广泛应用于结核病和其他细菌性疾病的治疗。THY-CH-ZnFe2O4 NPs有望成为一种安全有效的治疗剂,为当前结核病治疗策略的局限性提供了潜在的解决方案。
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引用次数: 0
Strategies in Parkinson's Disease Therapeutics - A Need for Synergy of Ayurveda, Small Molecules and Nanoparticles aided Approaches. 帕金森病治疗策略--需要阿育吠陀、小分子和纳米颗粒辅助疗法的协同作用。
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-11-27 DOI: 10.2174/0115680266314877241105051752
Shatabdi Choudhury, Archi Garg, Lakshmi Anand, Muchukunte Mukunda Srinivas Bharath, Ravi Yadav, Phalguni Anand Alladi

Despite extensive research, there is an unmet need for developing disease-modifying therapies for Parkinson's disease (PD). Failure of certain landmark clinical trials has highlighted the need for a better understanding of the disease pathogenesis as well as identifying the hurdles in developing drug candidates and designing clinical trials. While adhering to these needs, several promising trials are currently underway with the hope of developing reliable targets. There is also a need to conduct research on plant-based natural products and use them as therapeutic candidates for PD. In this context, many studies have demonstrated the efficacy of medicinal plants and their principal phytochemicals. This review provides an update on the presently underway clinical trials with a small emphasis on the disease modifying therapies that target small molecules, mitochondria, and oligodendrocytes. The role of ethnopharmacology-based approaches for treatment of PD has also been discussed. The third aspect of the article considers the importance of nanomedicine in this area, including the use of liposomes and nanoparticles to provide a novel approach for the treatment of PD.

尽管开展了大量研究,但开发帕金森病(PD)疾病改变疗法的需求仍未得到满足。某些具有里程碑意义的临床试验的失败突出表明,我们需要更好地了解疾病的发病机制,并找出开发候选药物和设计临床试验的障碍。在坚持这些需求的同时,目前正在进行几项前景看好的试验,希望能开发出可靠的靶点。此外,还需要对植物性天然产品进行研究,并将其作为治疗帕金森病的候选药物。在这方面,许多研究已经证明了药用植物及其主要植物化学物质的疗效。本综述介绍了目前正在进行的临床试验的最新情况,并重点介绍了以小分子、线粒体和少突胶质细胞为靶点的疾病调节疗法。文章还讨论了基于民族药理学的方法在治疗帕金森病中的作用。文章的第三个方面探讨了纳米医学在这一领域的重要性,包括利用脂质体和纳米颗粒提供治疗帕金森病的新方法。
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引用次数: 0
The Computational Tools to Identify DNA Repeats and Motifs: A Systematic Review. 识别 DNA 重复序列和基元的计算工具:系统综述》(The Computational Tools to Identify DNA Repeats and Motifs: A Systematic Review.
IF 2.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-11-21 DOI: 10.2174/0115680266331305241113172257
Kavya Singh, Shreya Srivastava, Ashish Prabhu, Navjeet Kaur

Introduction: DNA repeats and motifs are specific nucleotide patterns/DNA sequences frequently present in the genomes of prokaryotes and eukaryotes. Computational identification of these discrete patterns is of considerable importance since they are associated with gene regulation, genomic instability, and genetic diversity and result in a variety of diseases/disorders.

Objective: In this article, the myriad of computational tools/algorithms and databases (~200 distinct resources) implicated in the detection of DNA repeats and motifs have been enlisted. This article will not only provide guidance to the users regarding the accuracy, reliability, and popularity (reflected by the citation index) of currently available tools but also enable them to select the best tool(s) to carry out a desired task.

Methods: The structured literature review, with its dependable and reproducible research process, allowed us to acquire 200 peer-reviewed publications from indexing databases, such as Scopus, ScienceDirect, Web of Science (WoS), PubMed, and EMBASE, by utilizing PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analysis) regulations. Numerous keyword combinations regarding DNA repeats and motifs were used to create the query syntax.

Results: Initially, 3,233 research publications were retrieved, and 200 of them that satisfied the eligibility criteria for the detection and identification of DNA repeats and motifs by computational tools were chosen. A total of 200 research publications were recovered, of which 99 dealt with repeat prediction tools, 12 with repetitive sequence databases, 19 with specialized regulatory element databases, and 69 with motif prediction tools.

Conclusion: This article lists numerous databases and computational tools/algorithms (~ 200 different resources) that are involved in the identification of DNA repeats and motifs. It will help users choose the appropriate tool(s) for carrying out a particular task in addition to offering guidance on the reliability, dependability, and popularity (as indicated by the citation index) of currently available tools.

引言DNA 重复序列和图案是原核生物和真核生物基因组中经常出现的特定核苷酸模式/DNA 序列。计算识别这些离散模式相当重要,因为它们与基因调控、基因组不稳定性和遗传多样性有关,并导致多种疾病/失调:本文列举了与检测 DNA 重复序列和图案有关的大量计算工具/算法和数据库(约 200 种不同资源)。本文不仅将为用户提供有关当前可用工具的准确性、可靠性和流行度(通过引用指数反映)的指导,还将使他们能够选择最佳工具来完成所需的任务:结构化文献综述具有可靠、可重复的研究过程,我们利用 PRISMA(系统综述和元分析首选报告项)规定,从 Scopus、ScienceDirect、Web of Science (WoS)、PubMed 和 EMBASE 等索引数据库中获取了 200 篇同行评审出版物。在创建查询语法时使用了大量有关 DNA 重复序列和图案的关键词组合:初步检索了 3,233 篇研究论文,并选择了其中 200 篇符合通过计算工具检测和识别 DNA 重复序列和主题的资格标准的论文。共检索到 200 篇研究论文,其中 99 篇涉及重复预测工具,12 篇涉及重复序列数据库,19 篇涉及专门的调控元件数据库,69 篇涉及主题预测工具:本文列举了大量涉及 DNA 重复序列和主题的数据库和计算工具/算法(约 200 种不同资源)。除了就当前可用工具的可靠性、可信度和流行度(如引文索引所示)提供指导外,它还将帮助用户选择执行特定任务的适当工具。
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引用次数: 0
期刊
Current topics in medicinal chemistry
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