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Designing Novel NMDA Receptor Antagonists for Ischemic Stroke: A 3D-QSAR and Molecular Dynamics Simulation Approach. 设计缺血性卒中的新型NMDA受体拮抗剂:3D-QSAR和分子动力学模拟方法。
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-11-28 DOI: 10.2174/0115680266412043251124065339
Zhuangzhuang Wan, Xiaolin Jiang, Chenlon Fan, Boru Hou

Background: Strokes represent a significant global health concern, with ischemic stroke being the most prevalent and deadly form. The pathogenesis of ischemic stroke involves complex mechanisms, including excitotoxicity, oxidative stress, and cell death. This study presents a computational design of novel GluN2B-selective N-Methyl-D-Aspartate receptor antagonists with potential therapeutic applications in neurodegenerative disorders.

Methods: 3D-Quantitative Structure-Activity Relationship (QSAR) model and molecular dynamics simulations were employed to design novel NMDA receptor antagonists. A dataset of 53 derivatives was analyzed using structure-based virtual screening, molecular docking, and pharmacophore modeling.

Results: Molecular docking and dynamics simulations confirmed the binding affinity and dynamic behavior of the designed compounds, providing insights into their potential as therapeutic agents. We identified lead compound 75 with high predicted affinity and selectivity for GluN2Bcontaining receptors. Drug-likeness assessment, synthetic accessibility evaluation, and molecular dynamics simulations confirmed favorable pharmacokinetic properties and target engagement stability.

Conclusion: These findings provide a rational framework for the development of selective NMDA receptor antagonists with improved safety and efficacy profiles.

背景:中风是一个重要的全球健康问题,缺血性中风是最普遍和最致命的形式。缺血性脑卒中的发病机制复杂,包括兴奋毒性、氧化应激和细胞死亡。本研究提出了一种新型glun2b选择性n -甲基- d -天冬氨酸受体拮抗剂的计算设计,该拮抗剂在神经退行性疾病中具有潜在的治疗应用。方法:采用三维定量构效关系(QSAR)模型和分子动力学模拟设计新型NMDA受体拮抗剂。使用基于结构的虚拟筛选、分子对接和药效团建模对53个衍生物的数据集进行了分析。结果:分子对接和动力学模拟证实了所设计化合物的结合亲和力和动力学行为,为其作为治疗药物的潜力提供了见解。我们发现先导化合物75对glun2b受体具有较高的预测亲和力和选择性。药物相似性评估、合成可及性评估和分子动力学模拟证实了良好的药代动力学特性和靶标结合稳定性。结论:这些发现为开发具有更高安全性和有效性的选择性NMDA受体拮抗剂提供了合理的框架。
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引用次数: 0
Chemistry Based on Natural Products for Therapeutic Purposes. 基于治疗目的的天然产物化学。
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-11-18 DOI: 10.2174/0115680266450046251029111243
Parag Jain, Akanksha Jain
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引用次数: 0
Liver Cancer Bone Metastasis: Molecular Mechanisms and Therapeutic Insights. 肝癌骨转移:分子机制和治疗见解。
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-11-04 DOI: 10.2174/0115680266430839251017113122
Jing Sun, Lei Liu, Hanqing Zhang, Litao Huo, Shufeng Zhang, Shibo Huang, Bo Gao, Jigong Wu, Zhiming Chen

Liver cancer is a highly aggressive malignancy, and bone metastasis is a severe complication that negatively affects prognosis and quality of life. However, the molecular mechanisms underlying liver cancer bone metastasis remain poorly understood. This review examined recent advances related to epithelial-mesenchymal transition (EMT), circulating tumor cells (CTCs), and liver cancer stem cells (LCSCs), with a focus on surface markers, interactions within bone marrow (BM) niche, and relevant signaling pathways. Liver cancer bone metastasis is driven by EMT activation, CTC dissemination, and LCSC colonization in BM niches. Surface markers such as CD133, CD44, CD90, CD13, EpCAM, and OV6 contribute to tumor heterogeneity, dormancy, and therapy resistance. Key processes such as BM homing, osteolysis, and immune suppression are regulated through the osteoblast-osteoclast-cancer stem cell (OB-OC-CSC) axis and CXCL12-CXCR4 signaling. Dormancy-regulating molecules, including Annexin II, GAS6, osteopontin, TSP-1, tenascin C, and fibronectin, further determine CSCs' quiescence or reactivation. These insights highlighted the complexity of liver cancer bone metastasis, and suggested potential therapeutic strategies targeting EMT, LCSCs, and OB-OC-CSC crosstalk. Future studies are encouraged to validate marker functions in clinical cohorts, elucidate dormancy-exit mechanisms, and explore immunomodulatory interventions to overcome microenvironment-mediated resistance.

肝癌是一种高度侵袭性的恶性肿瘤,骨转移是影响预后和生活质量的严重并发症。然而,肝癌骨转移的分子机制尚不清楚。本文综述了上皮-间质转化(EMT)、循环肿瘤细胞(ctc)和肝癌干细胞(LCSCs)的最新进展,重点关注表面标志物、骨髓(BM)生态位内的相互作用以及相关的信号通路。肝癌骨转移是由EMT激活、CTC传播和LCSC在骨髓龛中的定殖驱动的。表面标志物如CD133、CD44、CD90、CD13、EpCAM和OV6有助于肿瘤异质性、休眠和治疗耐药。BM归巢、骨溶和免疫抑制等关键过程是通过成骨-破骨-癌干细胞(OB-OC-CSC)轴和CXCL12-CXCR4信号通路调控的。休眠调节分子,包括膜联蛋白II、GAS6、骨桥蛋白、TSP-1、腱蛋白C和纤维连接蛋白,进一步决定了CSCs的静止或再激活。这些发现突出了肝癌骨转移的复杂性,并提出了针对EMT、LCSCs和OB-OC-CSC串扰的潜在治疗策略。鼓励未来的研究在临床队列中验证标志物的功能,阐明休眠退出机制,并探索免疫调节干预来克服微环境介导的耐药性。
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引用次数: 0
Energy Metabolism and Cancer Pain: A Pathway to Innovative Treatment Strategies. 能量代谢和癌症疼痛:创新治疗策略的途径。
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-11-04 DOI: 10.2174/0115680266430740251020110940
Halisa Paerhati, Minhao Zhang, Lianbing Gu

Cancer is a widespread disease that often causes severe pain, significantly reducing patients’ quality of life and increasing the overall burden of the illness. Managing cancer pain effectively remains a major clinical challenge. Metabolism is a fundamental biological process that involves both the breaking down of substances to produce energy (catabolism) and the building of complex molecules (anabolism). Cancer cells exhibit altered energy metabolism, including glycolysis, oxidative phosphorylation, glutaminolysis, and lipid metabolism. Emerging research suggests that these metabolic changes can amplify cancer pain through specific signalling pathways, such as AMPK and PI3K/AKT. Targeting these metabolic pathways offers a promising approach for pain relief. This review explores the link between cancer pain and energy metabolism, highlighting potential new therapeutic strategies aimed at metabolic targets.

癌症是一种广泛存在的疾病,通常会导致严重的疼痛,大大降低了患者的生活质量,增加了疾病的总体负担。有效地管理癌症疼痛仍然是一个重大的临床挑战。代谢是一个基本的生物过程,包括物质的分解产生能量(分解代谢)和复杂分子的形成(合成代谢)。癌细胞表现出能量代谢的改变,包括糖酵解、氧化磷酸化、谷氨酰胺解和脂质代谢。新兴研究表明,这些代谢变化可以通过特定的信号通路(如AMPK和PI3K/AKT)放大癌症疼痛。靶向这些代谢途径为缓解疼痛提供了一种有希望的方法。这篇综述探讨了癌症疼痛和能量代谢之间的联系,强调了针对代谢靶点的潜在新治疗策略。
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引用次数: 0
A Review of The Place of Adipose-Derived Stem Cells among Stem Cell Applications in Neurodegenerative Diseases. 脂肪源性干细胞在神经退行性疾病干细胞应用中的地位综述
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-10-31 DOI: 10.2174/0115680266363649250620113954
Gurkan Yigitturk, Turker Cavusoglu

Treatment of neurodegenerative diseases aims to slow disease progression, alleviate symptoms, and improve life quality. Adipose-Derived Stem Cells (ADSCs) have emerged as a promising treatment for neurodegenerative diseases that can be easily obtained from adipose tissues. Their abundance, accessibility, and potential for multilinear differentiation make them an attractive candidate for regenerative medicine. ADSCs can release neurotrophic factors, modulate neuroinflammation, and potentially differentiate into neurons, giving hope for neuronal repair and replacement. Preclinical studies have shown the efficacy of several neurodegenerative diseases, such as Alzheimer's disease, Parkinson's disease, multiple sclerosis, and spinal cord injuries. ADSC has demonstrated the potential to improve functional results, promote neurogenesis, induce tissue integrity, and reduce neuron loss. Clinical trials are still underway, but evidence of the effectiveness of ADSC in neurodegeneration is still being developed. The first clinical studies focused on safety and feasibility and achieved promising results. Optimizing cell transmission, controlling tumor growth, standardizing treatment protocols and such challenges remain. Current research is aimed at addressing these obstacles and transforming ADSC therapy into a widespread clinical practice. This review focuses on the characteristics, problems, and future approaches of ADSC in the context of neurodegenerative diseases and therapeutic processes.

神经退行性疾病的治疗旨在减缓疾病进展,减轻症状,提高生活质量。脂肪源性干细胞(ADSCs)是一种很有前景的神经退行性疾病的治疗方法,可以很容易地从脂肪组织中获得。它们的丰富性、可及性和多线性分化的潜力使它们成为再生医学的有吸引力的候选者。ADSCs可以释放神经营养因子,调节神经炎症,并可能分化为神经元,为神经元修复和替代带来希望。临床前研究已经显示了几种神经退行性疾病的疗效,如阿尔茨海默病、帕金森病、多发性硬化症和脊髓损伤。ADSC已被证明具有改善功能结果、促进神经发生、诱导组织完整性和减少神经元损失的潜力。临床试验仍在进行中,但ADSC治疗神经退行性疾病有效性的证据仍在开发中。第一次临床研究着重于安全性和可行性,并取得了可喜的结果。优化细胞传递、控制肿瘤生长、标准化治疗方案等挑战依然存在。目前的研究旨在解决这些障碍,并将ADSC治疗转化为广泛的临床实践。本文综述了ADSC在神经退行性疾病和治疗过程中的特点、问题和未来的发展方向。
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引用次数: 0
PREFACE. 前言。
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-10-30 DOI: 10.2174/0115680266451523251019184031
Jia Zhou
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引用次数: 0
1,3,4-Thiadiazole as a Structural Motif: Advances in SAR, and Drug Discovery Applications. 1,3,4-噻二唑作为结构基序:SAR研究进展及药物发现应用。
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-10-30 DOI: 10.2174/0115680266394288251007083351
Pranshul Awasthi, Amit Mittal, Swati, Mohan Singh, Shivani Sharma

1,3,4-Thiadiazole is a multiform heterocyclic compound whose expansion in the field of medicinal chemistry is due to its unique structure and a variety of biological activities. The fivemembered ring system which contains sulfur and nitrogen atoms and is a hallmark scaffold for the manufacture of pioneering therapeutic agents, is the basic element of this compound. The 1,3,4- thiadiazole group exhibits a wide range of pharmacological activities, including antimicrobials, anti-inflammatories, anticonvulsants, antivirals, and antioxidants. This compound is a great candidate for drug discovery as it is a simple molecule subject to synthesis and interact with many different targets found in organisms. This paper aims to review recent research findings on this nucleus, highlighting the structural modifications of various thiadiazole derivatives for diverse pharmacological activities. Furthermore, this review also examines patents from 2019 to 2024 on thiadiazole derivatives for their applications in various diseases. Through the explication of the latest advancements and the comment on new trends, this study spotlights the capability of 1,3,4- thiadiazole as a core ring for the advancement of next-generation drugs.

1,3,4-噻二唑是一种多形式的杂环化合物,由于其独特的结构和多种生物活性,在药物化学领域得到了广泛的应用。含有硫和氮原子的五元环系统是制造开拓性治疗剂的标志性支架,是该化合物的基本元素。1,3,4-噻二唑具有广泛的药理活性,包括抗菌剂、抗炎药、抗惊厥药、抗病毒药和抗氧化剂。这种化合物是一种很好的候选药物,因为它是一种简单的分子,可以合成并与生物体中发现的许多不同的靶标相互作用。本文综述了该核的最新研究成果,重点介绍了各种噻二唑衍生物的结构修饰,以达到不同的药理活性。此外,本综述还审查了2019年至2024年噻二唑衍生物在各种疾病中的应用专利。本研究通过对最新进展的阐述和对新趋势的评论,强调了1,3,4-噻二唑作为新一代药物开发的核心环的能力。
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引用次数: 0
Role of Oxidative Stress in Human Neurodegenerative Pathologies: Lessons from the Drosophila Model. 氧化应激在人类神经退行性病理中的作用:来自果蝇模型的教训。
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-10-29 DOI: 10.2174/0115680266356916250729040245
Olga I Bolshakova, Ilya M Golomidov, Evgenia M Latypova, Elena V Ryabova, Svetlana V Sarantseva

Oxidative stress plays a critical role in many diseases, making it essential to study its impact on disease progression. However, clinical trials have many limitations and, in some cases, may not be possible at all. In this case, the development of in vivo models is highly anticipated. This is especially relevant for neurodegenerative diseases. Drosophila melanogaster models have a number of advantages over many other animal models, including the availability and costeffectiveness of breeding, the accumulated knowledge of the Drosophila genome, and the ability to manipulate a large number of individuals. The latter allows for rapid screening and in-depth studies of potential therapeutic agents, including natural compounds with antioxidant activity. This review describes genetic models of such pathologies as Parkinson's disease, Huntington's disease, Alzheimer's disease and hereditary spastic paraplegia created on Drosophila melanogaster. Studies conducted on such models are presented with an emphasis on the role of oxidative stress analysis. Oxidative stress is proven to be a link between neurodegenerative and metabolic diseases. In addition, studies on Drosophila melanogaster have been analyzed, in which the prospects of natural compounds as therapeutic agents for neurodegenerative and metabolic diseases have been demonstrated.

氧化应激在许多疾病中起着至关重要的作用,因此研究其对疾病进展的影响至关重要。然而,临床试验有许多局限性,在某些情况下,可能根本不可能。在这种情况下,体内模型的发展备受期待。这与神经退行性疾病尤其相关。与许多其他动物模型相比,黑腹果蝇模型具有许多优势,包括繁殖的可用性和成本效益,果蝇基因组知识的积累以及操纵大量个体的能力。后者允许快速筛选和深入研究潜在的治疗剂,包括具有抗氧化活性的天然化合物。本文综述了黑腹果蝇帕金森病、亨廷顿病、阿尔茨海默病和遗传性痉挛性截瘫等疾病的遗传模型。对这些模型进行的研究强调氧化应激分析的作用。氧化应激被证明是神经退行性疾病和代谢性疾病之间的联系。此外,对黑腹果蝇的研究进行了分析,证明了天然化合物作为神经退行性和代谢性疾病治疗剂的前景。
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引用次数: 0
Schizophrenia Pathophysiology: Neurotransmitter Dysfunctions and Biomarker Frontiers. 精神分裂症病理生理学:神经递质功能障碍和生物标志物前沿。
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-10-28 DOI: 10.2174/0115680266389476250818112814
Acharya Balkrishna, Sumit Kumar Singh, Sonam Verma, Pratha Bora, Vidhi Dobhal, Vedpriya Arya

Introduction: Schizophrenia is a heterogeneous chronic brain disorder driven by multiple pathophysiological processes. While dopaminergic theories dominate current therapies, emerging evidence highlights glutamatergic dysregulation, particularly N-methyl-D-aspartate receptor (NMDAR) hypofunction, as a key mechanism alongside dopaminergic, serotonergic, and neurodevelopmental pathways. This article synthesizes mechanistic insights, focusing on neurotransmitter disruptions, oxidative stress, neuroinflammation, and Wnt signaling, to elucidate the clinical diversity of schizophrenia and identify biomarkers for precise diagnostics and therapeutics.

Methods: A comprehensive literature search was conducted using Web of Science, Scopus, Google Scholar, and PubMed, with keywords including "schizophrenia," "psychosis," "pathophysiology," "mechanism," and "biomarker." Studies were selected to explore NMDAR hypofunction, glutamatergic dysregulation, and associated signaling pathways, integrating preclinical and human data to map circuit-based interactions and biomarker profiles.

Results: We present a novel circuit-based model of schizophrenia pathophysiology, centered on NMDAR hypofunction and glutamatergic dysregulation, integrating dopaminergic, GABAergic, and inflammatory pathways. Key biomarkers, including inflammatory (e.g., high-sensitivity Creactive protein [hs-CRP], interleukin-6 [IL-6]), neurochemical (e.g., brain-derived neurotrophic factor [BDNF]), and functional (e.g., mismatch negativity [MMN]), are categorized by symptomatic domains and clinical stages, providing diagnostic and prognostic insights.

Discussions: The findings underscore NMDAR hypofunction's role in driving schizophrenia's symptomatic spectrum, though its interplay with other pathways highlights the disorder's complexity. Neuronal loss, although not universal, is context-specific (e.g., hippocampal interneurons), complementing functional biomarkers such as MMN. Limitations include the need for robust human validation of biomarkers and broader exploration of non-glutamatergic mechanisms.

Conclusion: Considering the multifaceted nature of the disorder, our emphasis on the NMDAR hypofunction model can help explain many of the synergies involved among the seemingly independent dysregulated events.

精神分裂症是一种由多种病理生理过程驱动的异质性慢性脑疾病。虽然多巴胺能理论主导着当前的治疗,但新出现的证据强调谷氨酸能失调,特别是n -甲基- d -天冬氨酸受体(NMDAR)功能低下,与多巴胺能、血清素能和神经发育途径一起是一个关键机制。本文综合机制见解,重点关注神经递质破坏,氧化应激,神经炎症和Wnt信号,以阐明精神分裂症的临床多样性,并确定精确诊断和治疗的生物标志物。方法:综合检索Web of Science、Scopus、谷歌Scholar、PubMed等相关文献,检索关键词为“schizophrenia”、“psychosis”、“pathphysiology”、“mechanism”、“biomarker”。我们选择研究来探索NMDAR功能减退、谷氨酸能失调和相关的信号通路,整合临床前和人类数据来绘制基于电路的相互作用和生物标志物图谱。结果:我们提出了一种新的基于神经回路的精神分裂症病理生理模型,以NMDAR功能减退和谷氨酸能失调为中心,整合了多巴胺能、gaba能和炎症途径。关键的生物标志物,包括炎症(如高敏活性蛋白[hs-CRP]、白细胞介素-6 [IL-6])、神经化学(如脑源性神经营养因子[BDNF])和功能(如错配阴性[MMN]),根据症状领域和临床阶段进行分类,提供诊断和预后见解。讨论:研究结果强调了NMDAR功能障碍在驱动精神分裂症症状谱中的作用,尽管它与其他途径的相互作用突出了该疾病的复杂性。神经元损失,虽然不是普遍的,但是特定环境的(例如,海马中间神经元),补充功能性生物标志物,如MMN。局限性包括需要对生物标志物进行强有力的人体验证和对非谷氨酸能机制的更广泛探索。结论:考虑到该疾病的多面性,我们对NMDAR功能障碍模型的强调可以帮助解释许多看似独立的失调事件之间的协同作用。
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引用次数: 0
Antiviral Potential of Brown Algal Metabolites Against A179L Anti-apoptotic Protein: A Computational Strategy for African Swine Fever Treatment. 褐藻代谢物对A179L抗凋亡蛋白的抗病毒潜力:非洲猪瘟治疗的计算策略
IF 3.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-10-27 DOI: 10.2174/0115680266393922251005173927
Mark Andrian B Macalalad, Fredmoore L Orosco

Introduction/objective: African swine fever virus poses a persistent threat to the global pork industry owing to its severe impact on animal welfare, the economy, and food security. Currently, no antiviral medicines are available, and biosecurity measures, such as quarantine and culling, have proven insufficient, often resulting in further economic losses. Given the widespread impact of ASFV, there is an urgent need to explore and develop new treatment strategies to mitigate its spread.

Methods: 1,212 secondary metabolites from brown algae were screened using ADMET profiling. Compounds with favorable properties were selected for molecular docking against A179L, an antiapoptotic protein of ASFV. The top-scoring metabolites were further analyzed through molecular dynamics simulations, principal component analysis (PCA), and binding energy calculations.

Results: ADMET profiling identified compounds with drug-like pharmacokinetic properties. Consensus molecular docking using two docking programs predicted the binding poses of the metabolites, and the top ten candidate ligands with the strongest docking scores were selected. We then performed 300 ns molecular dynamics simulations to assess the stability of the protein-ligand complexes, which were further validated through Principal Component Analysis (PCA). Finally, binding energies were estimated using both MMPBSA and MMGBSA approaches, and the key residues involved during binding were identified. All ten final candidate ligands demonstrated stability and favorable binding affinity (-27.78 kcal/mol to -38.58 kcal/mol).

Conclusion: Five compounds (CID: 24796376, sargachromanol G, strictaepoxide, CID: 163107957, and saringosterone) with the strongest binding energies are recommended for in vitro and in vivo testing to validate their potential as therapeutic agents against ASFV.

前言/目的:非洲猪瘟病毒对动物福利、经济和粮食安全造成严重影响,对全球猪肉产业构成持续威胁。目前,没有抗病毒药物可用,而检疫和扑杀等生物安全措施已被证明是不够的,往往造成进一步的经济损失。鉴于非洲猪瘟的广泛影响,迫切需要探索和制定新的治疗策略以减轻其传播。方法:利用ADMET谱法从褐藻中筛选1212种次生代谢物。选择具有良好性质的化合物与ASFV抗凋亡蛋白A179L进行分子对接。通过分子动力学模拟、主成分分析(PCA)和结合能计算进一步分析得分最高的代谢物。结果:ADMET分析鉴定出具有药物样药代动力学性质的化合物。采用两种对接方案进行共识分子对接,预测代谢物的结合姿态,并选出对接得分最高的前10位候选配体。然后,我们进行了300 ns的分子动力学模拟,以评估蛋白质-配体复合物的稳定性,并通过主成分分析(PCA)进一步验证。最后,利用MMPBSA和MMGBSA方法估计结合能,并确定结合能过程中涉及的关键残基。所有候选配体均表现出良好的结合亲和力和稳定性(-27.78 kcal/mol ~ -38.58 kcal/mol)。结论:5个结合能最强的化合物(CID: 24796376、sargachromanol G、strictaepoxide、CID: 163107957和saringosterone)可用于体外和体内试验,验证其作为ASFV治疗药物的潜力。
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