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Reconstructing human pancreatic gene networks enhances stem cell-derived β cell induction. 重建人类胰腺基因网络增强干细胞来源的β细胞诱导。
IF 8.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-11 Epub Date: 2025-10-20 DOI: 10.1016/j.devcel.2025.09.018
Xin-Xin Yu, Xin Wang, Liu Yang, Mao-Yang He, Xi Wang, Yi-Ning Wang, Ke-Ran Li, Cheng-Ran Xu

Generating functional β cells from stem cells remains a major challenge in regenerative medicine due to the incomplete recapitulation of human pancreatic development in vitro. By integrating newly generated human single-cell RNA sequencing (RNA-seq) datasets (Carnegie stages 10-15) with existing data, we mapped gene co-expression networks (GCNs) underlying pancreatic lineage progression in humans and mice. We observed significant species-specific differences in GCN robustness and dorsal-ventral propensity for progenitor development. Benchmarking three common differentiation protocols against the in vivo datasets showed that they fail to reproduce human-like GCNs, thereby limiting stem cell-derived insulin-secreting β cell (SC-β cell) induction efficiency. To address this, we developed a protocol that reconstructs human pancreatic GCN dynamics, shortens the induction period to 19 days, and achieves up to ∼70% β cell content. SC-islets generated with this method significantly alleviated diabetic symptoms and maintained mature β cell function after transplantation in mice. These findings bridge in vivo mechanisms and in vitro differentiation, advancing stem cell-based therapies.

由于体外人类胰腺发育的不完整再现,从干细胞中生成功能性β细胞仍然是再生医学的主要挑战。通过整合新生成的人类单细胞RNA测序(RNA-seq)数据集(卡内基阶段10-15)与现有数据,我们绘制了人类和小鼠胰腺谱系进展的基因共表达网络(GCNs)。我们观察到GCN稳健性和祖细胞发育的背-腹侧倾向的显著物种特异性差异。针对体内数据集对三种常见分化方案进行基准测试表明,它们无法复制出类似人类的GCNs,从而限制了干细胞衍生的胰岛素分泌β细胞(SC-β细胞)的诱导效率。为了解决这个问题,我们开发了一种重建人类胰腺GCN动力学的方案,将诱导期缩短至19天,并达到高达70%的β细胞含量。该方法制备的sc -胰岛在移植后可显著缓解糖尿病症状,维持成熟β细胞功能。这些发现在体内机制和体外分化之间架起了桥梁,推动了基于干细胞的治疗。
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引用次数: 0
Organizers in a dish: Modeling human CNS morphogenesis. 培养皿中的组织者:模拟人类中枢神经系统的形态发生。
IF 8.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-11 Epub Date: 2026-02-04 DOI: 10.1016/j.devcel.2026.01.003
Georgina Miller, Daniel J Lloyd-Davies Sánchez, José González Martínez, Alexander W Justin, Madeline A Lancaster, Luca Guglielmi

The human brain stands out for the scale of cellular and morphological complexity across anterior-posterior domains. Modeling the entire neuraxis is therefore essential to comprehend human neural development and disease. Brain organoids commonly recapitulate anterior regions due to the propensity of neural progenitors to acquire telencephalic identities and self-organize into cortical layers. In the embryo, posterior brain patterning is orchestrated by organizers, signaling centers positioned at anterior-posterior locations that are rarely induced in vitro. Several strategies have been developed to reproduce organizer signals, employing small molecules and recombinant morphogens, thereby expanding the in vitro repertoire of human neural identities. Despite this, posterior models do not yet reproduce the morphological complexity of their in vivo counterparts. In this review, we discuss how this discrepancy may stem from the inability to recapitulate the spatiotemporal dynamics of organizer activity and how recent technologies can balance guided differentiation and self-organization, enhancing the fidelity of human brain organoid models.

人类大脑突出的细胞和形态的复杂性的规模跨越前后域。因此,对整个神经轴进行建模对于理解人类神经发育和疾病至关重要。由于神经祖细胞倾向于获得端脑区身份并自组织成皮层,脑类器官通常概括前区。在胚胎中,后脑模式是由组织者精心安排的,位于前后位置的信号中心很少在体外诱导。已经开发了几种策略来复制组织者信号,使用小分子和重组形态因子,从而扩大了体外人类神经身份的库。尽管如此,后验模型还不能再现其体内同类的形态复杂性。在这篇综述中,我们讨论了这种差异可能源于无法概括组织者活动的时空动态,以及最近的技术如何平衡引导分化和自组织,提高人类大脑类器官模型的保真度。
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引用次数: 0
Benchmarking in vivo and in vitro gene co-expression networks enables efficient β-like cell differentiation 体内和体外基因共表达网络的标杆化使β样细胞分化高效
IF 11.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-11 DOI: 10.1016/j.devcel.2026.01.004
Jifeng Liu, Anne Grapin-Botton
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引用次数: 0
Sensitive matters: Sensory nerve regulation of skeletal stem cells in bone marrow 敏感事项:骨髓中骨骼干细胞的感觉神经调节
IF 11.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-11 DOI: 10.1016/j.devcel.2025.12.010
Noriaki Ono
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引用次数: 0
Taking the pulse of RNA polymerase II in intact tissue with PReCIS-seq 用PReCIS-seq测定完整组织中RNA聚合酶II的脉冲
IF 11.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-11 DOI: 10.1016/j.devcel.2026.01.008
Sarah Platt, Peggy Myung
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引用次数: 0
Degradation of detrimental microRNAs safeguards the fertilized egg cells to establish an ECS-dependent polytubey block in Arabidopsis. 有害microrna的降解保护受精卵细胞在拟南芥中建立ecs依赖性多管阻滞。
IF 8.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-11 Epub Date: 2025-12-16 DOI: 10.1016/j.devcel.2025.12.002
Kun Shen, Mengxue Qu, Xuemei Zhou, Yingying Guo, Yicheng Zhong, Meng-Xiang Sun, Peng Zhao
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引用次数: 0
Tissue-scale mapping reveals a central role of hepatoblasts in the regulation of fetal liver hematopoiesis and stem cell maintenance 组织尺度的制图揭示了肝母细胞在调节胎儿肝脏造血和干细胞维持中的核心作用
IF 11.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-11 DOI: 10.1016/j.devcel.2026.01.011
Anjali Vijaykumar, Patrick M. Helbling, Flavian Thelen, Serena Fazio, YeVin Mun, Ana Luisa Pereira, Karolina A. Zielińska, Paul Büschl, Thomas Zerjatke, Kathrin Loosli, Stephan Isringhausen, Bjoern Menze, Takashi Nagasawa, Ingo Roeder, Alvaro Gomariz, Markus G. Manz, Tomomasa Yokomizo, César Nombela-Arrieta
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引用次数: 0
Noncanonical open reading frames from lncRNAs encode functional micropeptides that help shape agronomic traits in rice 来自lncrna的非规范开放阅读框编码有助于形成水稻农艺性状的功能微肽
IF 11.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-10 DOI: 10.1016/j.devcel.2026.01.010
Yu Cheng, Rui-Rui He, Jie Jiang, Lu Yang, Chao Yuan, Yi-Chao Qin, Wen-Long Zhao, Wan-Ting Mo, Yu-Hong Liao, Zheng-Tong Chen, Jun-Jie Feng, Hui-Yin Pang, Ye -Cheng, Meng-Qi Lei, Yan-Fei Zhou, Jian-Ping Lian, Yu-Chan Zhang, Yue-Qin Chen
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引用次数: 0
Bmp9 regulates Notch signaling and the temporal dynamics of angiogenesis via Lunatic Fringe. Bmp9通过Lunatic Fringe调控Notch信号和血管生成的时间动态。
IF 8.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-05 DOI: 10.1016/j.devcel.2026.01.006
Tommaso Ristori, Raphael Thuret, Erika Hooker, Peter Quicke, Sami Sanlidag, Kevin Lanthier, Kalonji Ntumba, Irene M Aspalter, Marina Uroz, Cecilia M Sahlgren, Shane P Herbert, Christopher S Chen, Bruno Larrivée, Katie Bentley

Sprouting angiogenesis and blood vessel stabilization require precise coordination between endothelial cells (ECs) and pericytes. Bone Morphogenic Protein 9 (Bmp9), whose signaling through activin receptor-like kinase 1 (Alk1) is dysregulated in several diseases, was thought to regulate these processes by independently activating Notch target genes in an additive fashion with canonical Notch signaling. Here, through predictive computational modeling validated in mice, zebrafish, and human cell lines, we uncover that Bmp9 enhances Notch activity synergistically by upregulating Lunatic Fringe (Lfng) in ECs. Specifically, Bmp9-induced Lfng enhances Notch receptor activation, most strongly when Delta-like ligand 4 (Dll4) is also present. This Lfng regulation alters vessel branching by modulating the timing of EC phenotype selection and rearrangement during angiogenesis. Lfng also contributes to pericyte-driven vessel stabilization by mediating Jagged1 upregulation in Bmp9-stimulated ECs. In summary, Bmp9-upregulated Lfng enhances Dll4-Notch1 signaling in ECs and Jag1-Notch3 activation in pericytes, shaping angiogenic sprouting and stabilization outcomes.

血管新生和血管稳定需要内皮细胞(ECs)和周细胞之间的精确协调。骨形态发生蛋白9 (Bone Morphogenic Protein 9, Bmp9)通过激活素受体样激酶1 (activin receptor-like kinase 1, Alk1)发出的信号在几种疾病中被失调,被认为通过以典型Notch信号的加性方式独立激活Notch靶基因来调节这些过程。在这里,通过在小鼠、斑马鱼和人类细胞系中验证的预测计算模型,我们发现Bmp9通过上调ECs中的Lunatic Fringe (lng)来协同增强Notch活性。具体来说,bmp9诱导的Lfng增强了Notch受体的激活,当δ样配体4 (Dll4)也存在时,这种激活最为强烈。这种lng调节通过调节EC表型选择的时间和血管生成过程中的重排来改变血管分支。lfg还通过介导bmp9刺激的内皮细胞中Jagged1的上调来促进周细胞驱动的血管稳定。综上所述,bmp9上调的Lfng增强了ECs中的Dll4-Notch1信号和周细胞中Jag1-Notch3的激活,形成了血管生成发芽和稳定结果。
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引用次数: 0
AVP1-mediated pyrophosphate homeostasis coordinates calcium-dependent cellulose synthesis and autoimmunity during leaf growth. avp1介导的焦磷酸盐稳态协调叶片生长过程中钙依赖的纤维素合成和自身免疫。
IF 8.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-05 DOI: 10.1016/j.devcel.2026.01.005
Chen Fu, Zhihang Feng, Xu Teng, Yusuke Shikanai, Shuichi Hashimoto, Takehiro Kamiya, Zhiyi Jia, Wenjian Song, Yihui Xiao, Huiting Chen, Mutsumi Yamagami, Shinichiro Sawa, Yan Liang, Xiaobo Zhao, Xianyong Lin, Weiming Shi, Wolfgang Busch, Toru Fujiwara, Baohai Li

Calcium (Ca) availability is vital for optimal plant growth and immune signaling, yet the underlying mechanisms remain elusive. Here, we reveal that Arabidopsis vacuolar H⁺-pyrophosphatase (AVP1)-regulated cytosolic inorganic pyrophosphate (PPi) homeostasis governs leaf growth by maintaining cellulose synthesis to suppress autoimmune activation upon Ca deficiency. Ca deficiency reduces the AVP1 abundance, while AVP1 eliminates excess cytosolic PPi, which impairs guanosine triphosphate-dependent microtubule assembly and reduces cellulose synthase 3-mediated cellulose synthesis. This cell-wall disruption activates isochorismate synthase 1-mediated salicylic acid production, triggering autoimmune responses and inhibiting new leaf growth. Enhancing PPi hydrolysis genetically improves plant growth tolerance to low Ca availability (low-Ca). The link between Ca-dependent PPi metabolic regulation, autoimmunity, and leaf growth is conserved in tomato, highlighting the broad relevance of AVP1 and PPi homeostasis in plant resilience. Our findings offer potential strategies for improving crop tolerance to nutrient-limited environments.

钙(Ca)的可用性对于最佳植物生长和免疫信号至关重要,但潜在的机制仍然难以捉摸。在这里,我们揭示了拟南芥液泡H + -焦磷酸酶(AVP1)调节的细胞质无机焦磷酸盐(PPi)稳态通过维持纤维素合成来抑制钙缺乏时的自身免疫激活来控制叶片生长。钙缺乏降低了AVP1的丰度,而AVP1消除了过量的胞质PPi,这损害了鸟苷三磷酸依赖的微管组装,并减少了纤维素合酶3介导的纤维素合成。这种细胞壁破坏激活了异丙酸合成酶1介导的水杨酸产生,引发自身免疫反应并抑制新叶生长。增强PPi水解可从基因上提高植物对低钙有效性(low-Ca)的生长耐受性。在番茄中,钙依赖性PPi代谢调节、自身免疫和叶片生长之间的联系是保守的,这突出了AVP1和PPi稳态在植物抗逆性中的广泛相关性。我们的发现为提高作物对营养有限环境的耐受性提供了潜在的策略。
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Developmental cell
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