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Using a demographic model to project the long-term effects of fire management on tree biomass in Australian savannas 利用人口统计学模型预测火灾管理对澳大利亚热带稀树草原树木生物量的长期影响
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2023-01-24 DOI: 10.1002/ecm.1564
Brett P. Murphy, Peter J. Whitehead, Jay Evans, Cameron P. Yates, Andrew C. Edwards, Harry J. MacDermott, Dominique C. Lynch, Jeremy Russell-Smith

Tropical savannas are characterized by high primary productivity and high fire frequency, such that much of the carbon captured by vegetation is rapidly returned to the atmosphere. Hence, there have been suggestions that management-driven reductions in savanna fire frequency and/or severity could significantly reduce greenhouse gas emissions and sequester carbon in tree biomass. However, a key knowledge gap is the extent to which savanna tree biomass will respond to modest shifts in fire regimes due to plausible, large-scale management interventions. Here, we: (1) characterize relationships between the frequency and severity of fires and key demographic rates of savanna trees, based on long-term observations in vegetation monitoring plots across northern Australia; (2) use these relationships to develop a process-explicit demographic model describing the effects of fire on savanna tree populations; and (3) use the demographic model to address the question: to what extent is it feasible, through the strategic application of prescribed burning, to increase tree biomass in Australian tropical savannas? Our long-term tree monitoring dataset included observations of 12,344 tagged trees in 236 plots, monitored for between 3 and 24 years. Analysis of this dataset showed that frequent high-severity fires significantly reduced savanna tree recruitment, survival, and growth. Our demographic model suggested that: (1) despite the negative effects of frequent high-severity fires on demographic rates, savanna tree biomass appears to be suppressed by only a relatively small amount by contemporary fire regimes, characterized by a mix of low- to high-severity fires; and (2) plausible, management-driven reductions in the frequency of high-severity fires are likely to lead to increases in tree biomass of about 11.0 t DM ha−1 (95% CI: −1.2–20.8) over a century. Accounting for this increase in carbon storage could generate significant carbon credits, worth, on average, three times those generated annually by current greenhouse gas (methane and nitrous oxide) abatement projects, and has the potential to significantly increase the economic viability of fire/carbon projects, thereby promoting ecologically sustainable management of tropical savannas in Australia and elsewhere. This growing industry has the potential to bring much-needed economic activity to savanna landscapes, without compromising important natural and cultural values.

热带稀树草原的特点是初级生产力高,火灾频率高,因此植被捕获的大部分碳迅速返回到大气中。因此,有人建议,管理驱动的稀树草原火灾频率和/或严重程度的减少可以显著减少温室气体排放,并将碳封存在树木生物量中。然而,一个关键的知识差距是,热带草原树木生物量将在多大程度上对由于合理的大规模管理干预而导致的火灾制度的适度变化作出反应。在这里,我们:(1)基于对澳大利亚北部植被监测地块的长期观测,描述了火灾频率和严重程度与热带草原树木关键人口比率之间的关系;(2)利用这些关系建立了描述火灾对稀树草原树木种群影响的过程显式人口模型;(3)使用人口统计学模型来解决以下问题:通过战略性地应用规定燃烧,在多大程度上是可行的,以增加澳大利亚热带稀树草原的树木生物量?我们的长期树木监测数据集包括对236个地块的12,344棵标记树木的观测,监测时间为3至24年。对该数据集的分析表明,频繁的高严重性火灾显著减少了稀树草原树木的补充、存活和生长。我们的人口统计模型表明:(1)尽管频繁的高严重性火灾对人口统计率有负面影响,但热带稀树草原树木生物量似乎只受到当代火灾制度的相对较少的抑制,其特征是低到高严重性火灾的混合;(2)在一个世纪内,管理驱动的高严重性火灾频率的减少可能导致树木生物量增加约11.0 t DM / ha (95% CI: - 1.2-20.8)。考虑到碳储量的增加,可以产生大量的碳信用额,平均价值是目前温室气体(甲烷和一氧化二氮)减排项目每年产生的碳信用额的三倍,并有可能大大提高火/碳项目的经济可行性,从而促进澳大利亚和其他地方热带稀树草原的生态可持续管理。这个不断发展的产业有潜力为稀树草原带来急需的经济活动,而不会损害重要的自然和文化价值。
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引用次数: 2
Tree symbioses sustain nitrogen fixation despite excess nitrogen supply 尽管氮供应过多,树木共生体仍能维持固氮
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2022-12-29 DOI: 10.1002/ecm.1562
Duncan N. L. Menge, Amelia A. Wolf, Jennifer L. Funk, Steven S. Perakis, Palani R. Akana, Rachel Arkebauer, Thomas A. Bytnerowicz, K. A. Carreras Pereira, Alexandra M. Huddell, Sian Kou-Giesbrecht, Sarah K. Ortiz

Symbiotic nitrogen fixation (SNF) is a key ecological process whose impact depends on the strategy of SNF regulation—the degree to which rates of SNF change in response to limitation by N versus other resources. SNF that is obligate or exhibits incomplete downregulation can result in excess N fixation, whereas a facultative SNF strategy does not. We hypothesized that tree-based SNF strategies differed by latitude (tropical vs. temperate) and symbiotic type (actinorhizal vs. rhizobial). Specifically, we expected tropical rhizobial symbioses to display strongly facultative SNF as an explanation of their success in low-latitude forests. In this study we used 15N isotope dilution field experiments in New York, Oregon, and Hawaii to determine SNF strategies in six N-fixing tree symbioses. Nitrogen fertilization with +10 and +15 g N m−2 year−1 for 4–5 years alleviated N limitation in all taxa, paving the way to determine SNF strategies. Contrary to our hypothesis, all six of the symbioses we studied sustained SNF even at high N. Robinia pseudoacacia (temperate rhizobial) fixed 91% of its N (%Ndfa) in controls, compared to 64% and 59% in the +10 and +15 g N m−2 year−1 treatments. For Alnus rubra (temperate actinorhizal), %Ndfa was 95%, 70%, and 60%. For the tropical species, %Ndfa was 86%, 80%, and 82% for Gliricidia sepium (rhizobial); 79%, 69%, and 67% for Casuarina equisetifolia (actinorhizal); 91%, 42%, and 67% for Acacia koa (rhizobial); and 60%, 51%, and 19% for Morella faya (actinorhizal). Fertilization with phosphorus did not stimulate tree growth or SNF. These results suggest that the latitudinal abundance distribution of N-fixing trees is not caused by a shift in SNF strategy. They also help explain the excess N in many forests where N fixers are common.

共生固氮(SNF)是一个关键的生态过程,其影响取决于SNF调控策略,即SNF速率在响应氮和其他资源限制时的变化程度。专性SNF或表现不完全下调的SNF可导致过度的氮固定,而兼性SNF策略则不会。我们假设基于树木的SNF策略因纬度(热带vs温带)和共生类型(放线菌vs根瘤菌)而异。具体来说,我们期望热带根瘤菌共生表现出强烈的兼性SNF,作为它们在低纬度森林中成功的解释。在这项研究中,我们在纽约、俄勒冈和夏威夷进行了15N同位素稀释田间试验,以确定6种固氮树木共生体的SNF策略。4 ~ 5年+10和+15 g N m−2 - 1年的氮肥处理缓解了各类群的氮素限制,为确定SNF策略奠定了基础。与我们的假设相反,我们研究的所有6个共生体即使在高氮条件下也能维持SNF,而对照中刺槐(温带根瘤菌)的N (%Ndfa)固定率为91%,而在+10和+15 g N m - 2的1年处理中,这一比例分别为64%和59%。对红桤木(温带放线根),Ndfa分别为95%、70%和60%。热带种中根瘤菌的Ndfa分别为86%、80%和82%;木麻黄(放射线根)含量分别为79%、69%和67%;金合欢(根瘤菌)91%、42%和67%;Morella faya(放线菌)为60%、51%和19%。磷肥对树木生长和SNF没有刺激作用。这些结果表明,固氮树的纬向丰度分布不是由SNF策略的转变引起的。它们也有助于解释在许多固定氮素普遍存在的森林中过量的氮。
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引用次数: 8
Abiotic and biotic drivers of tree trait effects on soil microbial biomass and soil carbon concentration 树木性状的非生物和生物驱动因素对土壤微生物生物量和土壤碳浓度的影响
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2022-12-29 DOI: 10.1002/ecm.1563
Rémy Beugnon, Wensheng Bu, Helge Bruelheide, Andréa Davrinche, Jianqing Du, Sylvia Haider, Matthias Kunz, Goddert von Oheimb, Maria D. Perles-Garcia, Mariem Saadani, Thomas Scholten, Steffen Seitz, Bala Singavarapu, Stefan Trogisch, Yanfen Wang, Tesfaye Wubet, Kai Xue, Bo Yang, Simone Cesarz, Nico Eisenhauer

Forests are ecosystems critical to understanding the global carbon budget, due to their carbon sequestration potential in both aboveground and belowground compartments, especially in species-rich forests. Soil carbon sequestration is strongly linked to soil microbial communities, and this link is mediated by the tree community, likely due to modifications of microenvironmental conditions (i.e., biotic conditions, soil properties, and microclimate). We studied soil carbon concentration and the soil microbial biomass of 180 local neighborhoods along a gradient of tree species richness ranging from 1 to 16 tree species per plot in a Chinese subtropical forest experiment (BEF-China). Tree productivity and different tree functional traits were measured at the neighborhood level. We tested the effects of tree productivity, functional trait identity, and dissimilarity on soil carbon concentrations, and their mediation by the soil microbial biomass and microenvironmental conditions. Our analyses showed a strong positive correlation between soil microbial biomass and soil carbon concentrations. In addition, soil carbon concentration increased with tree productivity and tree root diameter, while it decreased with litterfall C:N content. Moreover, tree productivity and tree functional traits (e.g., fungal root association and litterfall C:N ratio) modulated microenvironmental conditions with substantial consequences for soil microbial biomass. We also showed that soil history and topography should be considered in future experiments and tree plantations, as soil carbon concentrations were higher at sites where historical (i.e., at the beginning of the experiment) carbon concentrations were high, themselves being strongly affected by the topography. Altogether, these results implied that the quantification of the different soil carbon pools is critical for understanding microbial community–soil carbon stock relationships and their dependence on tree diversity and microenvironmental conditions.

森林是了解全球碳收支至关重要的生态系统,因为它们在地上和地下都具有固碳潜力,特别是在物种丰富的森林中。土壤固碳与土壤微生物群落有着密切的联系,而这种联系是由树木群落介导的,可能是由于微环境条件(即生物条件、土壤性质和小气候)的改变。在中国亚热带森林试验(BEF-China)中,以每样地1 ~ 16种树种丰富度为梯度,研究了180个群落的土壤碳浓度和土壤微生物生物量。在邻域水平上测定树木生产力和不同功能性状。研究了树木生产力、功能性状同一性和差异性对土壤碳浓度的影响,以及土壤微生物量和微环境条件对土壤碳浓度的调节作用。我们的分析表明,土壤微生物生物量与土壤碳浓度呈正相关。土壤碳浓度随树木生产力和根径的增加而增加,随凋落物C:N含量的增加而降低。此外,树木生产力和树木功能性状(如真菌根系关联和凋落物C:N比)调节微环境条件,对土壤微生物生物量产生实质性影响。我们还表明,在未来的实验和树木种植中应考虑土壤历史和地形,因为在历史(即实验开始时)碳浓度较高的地点,土壤碳浓度较高,其本身受地形的强烈影响。总之,这些结果表明,不同土壤碳库的量化对于理解微生物群落-土壤碳储量关系及其对树木多样性和微环境条件的依赖至关重要。
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引用次数: 4
Interspecific differences in microhabitat use expose insects to contrasting thermal mortality 微生境使用的种间差异使昆虫面临截然不同的热死亡率
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2022-12-09 DOI: 10.1002/ecm.1561
Maria Vives-Ingla, Javier Sala-Garcia, Constantí Stefanescu, Armand Casadó-Tortosa, Meritxell Garcia, Josep Peñuelas, Jofre Carnicer

Ecotones linking open and forested habitats contain multiple microhabitats with varying vegetal structures and microclimatic regimes. Ecotones host many insect species whose development is intimately linked to the microclimatic conditions where they grow (e.g., the leaves of their host plants and the surrounding air). Yet microclimatic heterogeneity at these fine scales and its effects on insects remain poorly quantified for most species. Here we studied how interspecific differences in the use of microhabitats across ecotones lead to contrasting thermal exposure and survival costs between two closely-related butterflies (Pieris napi and P. rapae). We first assessed whether butterflies selected different microhabitats to oviposit and quantified the thermal conditions at the microhabitat and foliar scales. We also assessed concurrent changes in the quality and availability of host plants. Finally, we quantified larval time of death under different experimental temperatures (thermal death time [TDT] curves) to predict their thermal mortality considering both the intensity and the duration of the microclimatic heat challenges in the field. We identified six processes determining larval thermal exposure at fine scales associated with butterfly oviposition behavior, canopy shading, and heat and water fluxes at the soil and foliar levels. Leaves in open microhabitats could reach temperatures 3–10°C warmer than the surrounding air while more closed microhabitats presented more buffered and homogeneous temperatures. Interspecific differences in microhabitat use matched the TDT curves and the thermal mortality in the field. Open microhabitats posed acute heat challenges that were better withstood by the thermotolerant butterfly, P. rapae, where the species mainly laid their eggs. Despite being more thermosensitive, P. napi was predicted to present higher survivals than P. rapae due to the thermal buffering provided by their selected microhabitats. However, its offspring could be more vulnerable to host-plant scarcity during summer drought periods. Overall, the different interaction of the butterflies with microclimatic and host-plant variation emerging at fine scales and their different thermal sensitivity posed them contrasting heat and resource challenges. Our results contribute to setting a new framework that predicts insect vulnerability to climate change based on their thermal sensitivity and the intensity, duration, and accumulation of their heat exposure.

连接开放生境和森林生境的过渡带包含多种具有不同植被结构和小气候制度的微生境。过渡带是许多昆虫的宿主,它们的发育与它们生长的小气候条件密切相关(例如,寄主植物的叶子和周围的空气)。然而,在这些细微尺度上的小气候异质性及其对昆虫的影响,对大多数物种的量化仍然很差。在这里,我们研究了跨过渡带的微生境利用的种间差异如何导致两种密切相关的蝴蝶(Pieris napi和P. rapae)之间热暴露和生存成本的对比。我们首先评估了蝴蝶是否选择了不同的微栖息地进行产卵,并量化了微栖息地和叶面尺度的热条件。我们还评估了寄主植物的质量和可用性的同步变化。最后,我们量化了不同实验温度下幼虫的死亡时间(热死亡时间[TDT]曲线),以预测其热死亡率,同时考虑了田间小气候热挑战的强度和持续时间。我们确定了六个决定幼虫热暴露的过程,这些过程与蝴蝶产卵行为、树冠遮荫以及土壤和叶面上的热量和水通量有关。开放微生境的叶片温度比周围空气温度高3 ~ 10℃,而封闭微生境的叶片温度更为缓冲均匀。微生境利用的种间差异与田间热死亡率和TDT曲线吻合。开放的微生境带来了严重的热挑战,而耐热蝴蝶P. rapae则能更好地抵御这种挑战,该物种主要在这里产卵。尽管napi对温度更敏感,但由于其所选择的微生境提供了热缓冲,预计其存活率高于油菜。然而,在夏季干旱期间,其后代可能更容易受到寄主植物稀缺的影响。综上所述,蝴蝶与小气候和寄主植物变化的不同相互作用以及它们不同的热敏性使它们面临着不同的热量和资源挑战。我们的研究结果有助于建立一个基于昆虫热敏感性和热暴露强度、持续时间和积累的气候变化脆弱性预测的新框架。
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引用次数: 2
Partner fidelity and environmental filtering preserve stage-specific turtle ant gut symbioses for over 40 million years 合作伙伴的忠诚度和环境过滤将特定阶段的龟蚁肠道共生体保存了4000多万年
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2022-12-07 DOI: 10.1002/ecm.1560
Yi Hu, Catherine L. D'Amelio, Benoît Béchade, Christian S. Cabuslay, Piotr Łukasik, Jon G. Sanders, Shauna Price, Emily Fanwick, Scott Powell, Corrie S. Moreau, Jacob A. Russell
Sustaining beneficial gut symbioses presents a major challenge for animals, including holometabolous insects. Social insects may meet such challenges through partner fidelity, aided by behavioral symbiont transfer and transgenerational inheritance through colony founders. We address such potential through colony-wide explorations across 13 eusocial, holometabolous insect species in the ant genus Cephalotes . Through amplicon sequencing, we show that previously characterized worker microbiomes are conserved in sol-dier castes, that adult microbiomes exhibit trends of phylosymbiosis
维持有益的肠道共生体对包括全代谢组昆虫在内的动物来说是一个重大挑战。群居昆虫可能会通过伴侣忠诚、行为共生体转移和群体创始人的转基因遗传来应对这些挑战。我们通过对头蚁属13种真社会、全代谢组昆虫进行群体范围的探索来解决这一潜力。通过扩增子测序,我们发现先前表征的工人微生物群在士兵种姓中是保守的,成年微生物群表现出系统性共生的趋势,头足类与其最丰富的成年富集共生体共特异性。我们还发现,有翼女王在群体建立之前就有类似工蚁的微生物群,这表明垂直遗传是伴侣忠诚的一种手段。尽管一些数量丰富的成虫共生体定居在幼虫身上,但幼虫肠道微生物群的独特特征是来自肠杆菌目、乳杆菌目和放线菌属的环境细菌。头足类幼虫的分布表明,有4000多万年的保守环境过滤,因此,这是一种古老的、发育分区的共生关系背后的第二种维持机制。
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引用次数: 10
Climate-mediated population dynamics of a migratory songbird differ between the trailing edge and range core 气候对迁徙鸣禽尾缘和范围核心种群动态的影响
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2022-11-18 DOI: 10.1002/ecm.1559
William B. Lewis, Robert J. Cooper, Richard B. Chandler, Ryan W. Chitwood, Mason H. Cline, Michael T. Hallworth, Joanna L. Hatt, Jeff Hepinstall-Cymerman, Sara A. Kaiser, Nicholas L. Rodenhouse, T. Scott Sillett, Kirk W. Stodola, Michael S. Webster, Richard T. Holmes

Understanding the demographic drivers of range contractions is important for predicting species' responses to climate change; however, few studies have examined the effects of climate change on survival and recruitment across species' ranges. We show that climate change can drive trailing edge range contractions through the effects on apparent survival, and potentially recruitment, in a migratory songbird. We assessed the demographic drivers of trailing edge range contractions using a long-term demography dataset for the black-throated blue warbler (Setophaga caerulescens) collected across elevational climate gradients at the trailing edge and core of the breeding range. We used a Bayesian hierarchical model to estimate the effect of climate change on apparent survival and recruitment and to forecast population viability at study plots through 2040. The trailing edge population at the low-elevation plot became locally extinct by 2017. The local population at the mid-elevation plot at the trailing edge gradually declined and is predicted to become extirpated by 2040. Population declines were associated with warming temperatures at the mid-elevation plot, although results were more equivocal at the low-elevation plot where we had fewer years of data. Population density was stable or increasing at the range core, although warming temperatures are predicted to cause population declines by 2040 at the low-elevation plot. This result suggests that even populations within the geographic core of the range are vulnerable to climate change. The demographic drivers of local population declines varied between study plots, but warming temperatures were frequently associated with declining rates of population growth and apparent survival. Declining apparent survival in our study system is likely to be associated with increased adult emigration away from poor-quality habitats. Our results suggest that demographic responses to warming temperatures are complex and dependent on local conditions and geographic range position, but spatial variation in population declines is consistent with the climate-mediated range shift hypothesis. Local populations of black-throated blue warblers near the warm-edge range boundary at low latitudes and low elevations are likely to be the most vulnerable to climate change, potentially leading to local extirpation and range contractions.

了解范围缩小的人口驱动因素对于预测物种对气候变化的反应非常重要;然而,很少有研究考察气候变化对跨物种生存和繁殖的影响。我们表明,气候变化可以通过影响候鸟的明显生存和潜在的招募来驱动后缘范围的收缩。本文利用黑喉蓝莺(Setophaga caerulescens)的长期人口统计数据,在繁殖范围的后缘和核心的海拔梯度上收集数据,评估了后缘范围收缩的人口统计学驱动因素。我们使用贝叶斯层次模型来估计气候变化对表观生存和招募的影响,并预测到2040年研究地块的种群生存能力。2017年低海拔样地后缘种群局部灭绝。尾缘中高样地种群数量逐渐减少,预计到2040年将完全消失。人口下降与中高海拔地区的变暖有关,尽管在低海拔地区的结果更加模棱两可,因为我们有更少的数据。低海拔样地的人口密度到2040年将出现下降,但其核心区域的人口密度保持稳定或增加。这一结果表明,即使是处于该范围地理核心的种群也容易受到气候变化的影响。当地人口减少的人口驱动因素因研究地块而异,但变暖的温度通常与人口增长率和表观存活率的下降有关。在我们的研究系统中,表观存活率的下降很可能与越来越多的成年人从低质量的栖息地移民出去有关。我们的研究结果表明,人口对变暖的响应是复杂的,并且依赖于当地条件和地理范围位置,但人口下降的空间变化与气候介导的范围转移假设一致。在低纬度和低海拔地区,靠近温暖边缘范围边界的黑喉蓝莺的当地种群可能最容易受到气候变化的影响,可能导致当地灭绝和范围缩小。
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引用次数: 1
The geographic footprint of mutualism: How mutualists influence species' range limits 共生的地理足迹:共生者如何影响物种的范围限制
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2022-11-18 DOI: 10.1002/ecm.1558
Joshua C. Fowler, Marion L. Donald, Judith L. Bronstein, Tom E. X. Miller

Understanding mechanisms that generate range limits is central to knowing why species are found where they are and how they will respond to environmental change. There is growing awareness that biotic interactions play an important role in generating range limits. However, current theory and data overwhelmingly focus on abiotic drivers and antagonistic interactions. Here we explore the effect that mutualists have on their partner's range limits: the geographic “footprint” of mutualism. This footprint arises from two general processes: modification of a partner's niche through environment-dependent fitness effects and, for a subset of mutualisms, dispersal opportunities that lead suitable habitats to be filled. We developed a conceptual framework that organizes different footprints of mutualism and the underlying mechanisms that shape them, and evaluated supporting empirical evidence from the primary literature. In the available literature, we found that the fitness benefits and dispersal opportunities provided by mutualism can extend species' ranges; conversely, the absence of mutualism can constrain species from otherwise suitable regions of their range. Most studies found that the footprint of mutualism is driven by changes in the frequency of mutualist partners from range core to range edge, whereas fewer found changes in interaction outcomes, the diversity of partners, or varying sensitivities of fitness to the effects of mutualists. We discuss these findings with respect to specialization, dependence, and intimacy of mutualism. Much remains unknown about the geographic footprint of mutualisms, leaving fruitful areas for future work. A particularly important future direction is to explore the role of mutualism during range shifts under global change, including the promotion of shifts at leading edges and persistence at trailing edges.

了解产生范围限制的机制对于了解物种为什么会在哪里被发现以及它们将如何应对环境变化至关重要。越来越多的人认识到生物相互作用在产生范围限制方面起着重要作用。然而,目前的理论和数据绝大多数集中在非生物驱动和拮抗相互作用。在这里,我们探讨互惠主义者对其合作伙伴的范围限制的影响:互惠主义的地理“足迹”。这种足迹产生于两个一般的过程:通过环境依赖的适应度效应改变伴侣的生态位;对于共生关系的一个子集来说,分散机会导致合适的栖息地被填满。我们开发了一个概念框架,组织了互惠主义的不同足迹和形成它们的潜在机制,并评估了来自主要文献的支持性经验证据。在现有文献中,我们发现共生提供的适应度利益和扩散机会可以扩大物种的范围;相反,如果没有共生关系,物种就会被限制在合适的范围内。大多数研究发现,互惠关系的足迹是由互惠伙伴从范围核心到范围边缘的频率变化驱动的,而很少发现互动结果、合作伙伴的多样性或适合度对互惠者影响的不同敏感性的变化。我们将这些发现与互惠主义的专业化、依赖性和亲密性进行讨论。关于互惠主义的地理足迹还有很多未知之处,为未来的工作留下了富有成效的领域。未来一个特别重要的方向是探索互惠共生在全球变化下范围转移中的作用,包括促进前沿转移和后缘持续转移。
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引用次数: 6
Cross validation for model selection: A review with examples from ecology 模型选择的交叉验证:生态学实例综述
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2022-11-13 DOI: 10.1002/ecm.1557
Luke A. Yates, Zach Aandahl, Shane A. Richards, Barry W. Brook

Specifying, assessing, and selecting among candidate statistical models is fundamental to ecological research. Commonly used approaches to model selection are based on predictive scores and include information criteria such as Akaike's information criterion, and cross validation. Based on data splitting, cross validation is particularly versatile because it can be used even when it is not possible to derive a likelihood (e.g., many forms of machine learning) or count parameters precisely (e.g., mixed-effects models). However, much of the literature on cross validation is technical and spread across statistical journals, making it difficult for ecological analysts to assess and choose among the wide range of options. Here we provide a comprehensive, accessible review that explains important—but often overlooked—technical aspects of cross validation for model selection, such as: bias correction, estimation uncertainty, choice of scores, and selection rules to mitigate overfitting. We synthesize the relevant statistical advances to make recommendations for the choice of cross-validation technique and we present two ecological case studies to illustrate their application. In most instances, we recommend using exact or approximate leave-one-out cross validation to minimize bias, or otherwise k-fold with bias correction if k < 10. To mitigate overfitting when using cross validation, we recommend calibrated selection via our recently introduced modified one-standard-error rule. We advocate for the use of predictive scores in model selection across a range of typical modeling goals, such as exploration, hypothesis testing, and prediction, provided that models are specified in accordance with the stated goal. We also emphasize, as others have done, that inference on parameter estimates is biased if preceded by model selection and instead requires a carefully specified single model or further technical adjustments.

指定、评估和选择候选统计模型是生态学研究的基础。常用的模型选择方法是基于预测分数,包括信息标准,如赤池信息标准和交叉验证。基于数据分割,交叉验证是特别通用的,因为它甚至可以在不可能导出可能性(例如,许多形式的机器学习)或精确计数参数(例如,混合效应模型)时使用。然而,许多关于交叉验证的文献都是技术性的,并且分布在统计期刊上,这使得生态分析师很难在广泛的选择中进行评估和选择。在这里,我们提供了一个全面的,易于理解的回顾,解释了交叉验证模型选择的重要但经常被忽视的技术方面,如:偏差校正,估计不确定性,分数的选择和选择规则,以减轻过拟合。我们综合了相关的统计进展,对交叉验证技术的选择提出了建议,并提出了两个生态案例研究来说明它们的应用。在大多数情况下,我们建议使用精确或近似的留一交叉验证来最小化偏差,或者如果k < 10,则使用k倍的偏差校正。为了减轻交叉验证时的过拟合,我们建议通过我们最近引入的修改后的单标准误差规则进行校准选择。我们提倡在跨一系列典型建模目标的模型选择中使用预测分数,例如探索、假设检验和预测,只要模型是按照既定目标指定的。我们还强调,正如其他人所做的那样,如果在模型选择之前对参数估计进行推断是有偏差的,而是需要仔细指定单个模型或进一步的技术调整。
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引用次数: 22
Scientists' warning on climate change and insects 科学家对气候变化和昆虫的警告
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2022-11-07 DOI: 10.1002/ecm.1553
Jeffrey A. Harvey, Kévin Tougeron, Rieta Gols, Robin Heinen, Mariana Abarca, Paul K. Abram, Yves Basset, Matty Berg, Carol Boggs, Jacques Brodeur, Pedro Cardoso, Jetske G. de Boer, Geert R. De Snoo, Charl Deacon, Jane E. Dell, Nicolas Desneux, Michael E. Dillon, Grant A. Duffy, Lee A. Dyer, Jacintha Ellers, Anahí Espíndola, James Fordyce, Matthew L. Forister, Caroline Fukushima, Matthew J. G. Gage, Carlos García-Robledo, Claire Gely, Mauro Gobbi, Caspar Hallmann, Thierry Hance, John Harte, Axel Hochkirch, Christian Hof, Ary A. Hoffmann, Joel G. Kingsolver, Greg P. A. Lamarre, William F. Laurance, Blas Lavandero, Simon R. Leather, Philipp Lehmann, Cécile Le Lann, Margarita M. López-Uribe, Chun-Sen Ma, Gang Ma, Joffrey Moiroux, Lucie Monticelli, Chris Nice, Paul J. Ode, Sylvain Pincebourde, William J. Ripple, Melissah Rowe, Michael J. Samways, Arnaud Sentis, Alisha A. Shah, Nigel Stork, John S. Terblanche, Madhav P. Thakur, Matthew B. Thomas, Jason M. Tylianakis, Joan Van Baaren, Martijn Van de Pol, Wim H. Van der Putten, Hans Van Dyck, Wilco C. E. P. Verberk, David L. Wagner, Wolfgang W. Weisser, William C. Wetzel, H. Arthur Woods, Kris A. G. Wyckhuys, Steven L. Chown

Climate warming is considered to be among the most serious of anthropogenic stresses to the environment, because it not only has direct effects on biodiversity, but it also exacerbates the harmful effects of other human-mediated threats. The associated consequences are potentially severe, particularly in terms of threats to species preservation, as well as in the preservation of an array of ecosystem services provided by biodiversity. Among the most affected groups of animals are insects—central components of many ecosystems—for which climate change has pervasive effects from individuals to communities. In this contribution to the scientists' warning series, we summarize the effect of the gradual global surface temperature increase on insects, in terms of physiology, behavior, phenology, distribution, and species interactions, as well as the effect of increased frequency and duration of extreme events such as hot and cold spells, fires, droughts, and floods on these parameters. We warn that, if no action is taken to better understand and reduce the action of climate change on insects, we will drastically reduce our ability to build a sustainable future based on healthy, functional ecosystems. We discuss perspectives on relevant ways to conserve insects in the face of climate change, and we offer several key recommendations on management approaches that can be adopted, on policies that should be pursued, and on the involvement of the general public in the protection effort.

气候变暖被认为是人类对环境最严重的压力之一,因为它不仅对生物多样性有直接影响
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引用次数: 62
Quantitative biogeography: Decreasing and more variable dynamics of critical species in an iconic meta-ecosystem 定量生物地理学:标志性元生态系统中关键物种的减少和变化更大的动力学
IF 6.1 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2022-10-25 DOI: 10.1002/ecm.1556
Bruce A. Menge, Jonathan W. Robinson, Brittany N. Poirson, Sarah A. Gravem

Ecosystem stability has intrigued ecologists for decades, and the realization that the global climate was changing has sharpened and focused this interest. One possible early warning signal of decreasing stability is increasing variability in ecosystems over time with increasing climate variability. Determining climate change effects on community stability, however, requires long-term studies of structure and underlying dynamics, including bottom-up and top-down effects in natural ecosystems. Although relevant datasets were rare in the early years of community ecology, such information has increased in recent decades. We investigated spatiotemporal changes in mean and variability of ecological subsidies (nutrients, phytoplankton, prey colonization), performance metrics of a dominant space occupier (mussels) and its primary predator (sea stars), and sea star predation rates on mussels in relation to climatic oscillations, temperature, and disease on rocky shores. The research involved annually repeated multiyear (~1999–2018), multisite (13 sites nested within five regions along ~260 km of the Oregon coast) observations, measurements, and experiments. We analyzed associations between environmental variables and ecological performance of key elements of the sea star-mussel-dominated mid intertidal system. We found that upwelling declined in some regions, but became more variable across all study regions. Air and water temperatures oscillated, but their mean and variation increased through time, with peak values coinciding with the 2014–2016 combined El Niño and Marine Heat Wave. Ecological subsidies generally declined during the study period but increased in variability. Excepting growth rate, mussel (Mytilus californianus) performance (condition index, reproductive output) generally decreased and became more variable. Primarily due to a sea star wasting epidemic, reproductive output of the top predator Pisaster ochraceus decreased and became more variable, and predation rate on mussels decreased. Analyses indicated that the primary drivers of these changes were temperature-related environmental factors. As declining means and increasing variability of ecological performances can typify destabilizing ecosystems, and environmental trends are toward ever more stressful conditions, the outlook for this iconic ecosystem is discouraging. Immediate and rapid action to mitigate and ultimately reverse climate change likely is the only option available to prevent an irreversible shift in the future of this, and most other ecosystems.

几十年来,生态系统的稳定性一直引起生态学家的兴趣,而全球气候变化的认识使这种兴趣更加强烈和集中。稳定性下降的一个可能的早期预警信号是,随着时间的推移,生态系统的变异性随着气候变异性的增加而增加。然而,要确定气候变化对群落稳定性的影响,需要对自然生态系统的结构和潜在动力学进行长期研究,包括自下而上和自上而下的影响。尽管在群落生态学的早期,相关数据集很少,但近几十年来,这类信息有所增加。我们研究了生态补贴(营养、浮游植物、猎物定殖)的平均值和变异度的时空变化,主要空间占有者(贻贝)及其主要捕食者(海星)的性能指标,以及海星对贻贝的捕食率与岩石海岸气候振荡、温度和疾病的关系。该研究涉及每年重复多年(~ 1999-2018),多地点(沿俄勒冈海岸约260公里的五个区域内的13个地点)观察,测量和实验。我们分析了以海星贻贝为主的中潮间带系统中环境变量与关键要素生态性能之间的关系。我们发现上升流在一些地区有所下降,但在所有研究地区都变得更加多变。空气和水温振荡,但它们的平均值和变化随着时间的推移而增加,峰值与2014-2016年El Niño和海洋热浪相吻合。生态补贴在研究期间总体下降,但变异性增加。除生长率外,贻贝(Mytilus californianus)的各项性能(状态指数、繁殖产量)普遍下降,变化较大。主要是由于海星消耗流行,顶级捕食者Pisaster ochraceus的繁殖产量下降,变得更加可变,对贻贝的捕食率下降。分析表明,这些变化的主要驱动因素是与温度相关的环境因子。由于生态性能的下降和增加的可变性可以作为不稳定生态系统的典型特征,并且环境趋势正朝着更加紧张的条件发展,这一标志性生态系统的前景令人沮丧。立即采取迅速行动,减缓并最终扭转气候变化,可能是防止这一生态系统和大多数其他生态系统未来发生不可逆转转变的唯一选择。
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引用次数: 1
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