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Stakeholders' Perspectives on the Current State and Transition to Sustainable Soil Management Across Europe 利益相关者对欧洲可持续土壤管理现状和转型的看法
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-10-20 DOI: 10.1111/ejss.70214
Mansonia Pulido-Moncada, Tiffanie Faye Stone, Jonna Løvlund Bach, Martin Hvarregaard Thorsøe, Lars J. Munkholm, Valentina Baratella, Silvia Vanino, Roberta Farina, Claire Chenu, Sophie Cornu, Eloïse Mason, Saskia Keesstra, Anke M. Herrmann, Jennie Barron, Bo Stenberg, Klaus A. Jarosch, Rok Mihelič, Sara Mavsar, Maria da Conceição Gonçalves, Nádia Luísa Castanheira, Tove Ortman, Péter László, David Ramler, Sevinc Madenoglu, Hesna Ozcan, Johanna Leppälä, Greet Ruysschaert, Benjamin S. Gimeno, Bruno Huyghebaert, Raimonds Kasparinskis, Grzegorz Siebielec, Karolina Swiatek

Implementing sustainable soil management practices to enhance soil health is a priority in research and policymaking across Europe. There is a need to identify the main soil challenges faced by different European stakeholders and the critical threats limiting the adoption of sustainable management of agricultural soils. The present study analyses stakeholders' perspectives on key soil challenges, knowledge gaps, and priorities for agricultural soil research across partner countries that participated in the European Joint Programme on Soil (EJP SOIL) 2020–2025. Two complementary stakeholder activities—a survey and a workshop—were conducted across 24 partner countries (divided into four regions: Central, Northern, Southern, and Western Europe) of the EJP SOIL consortium in 2024. Among 10 pre-identified soil challenges, the findings highlight that maintaining or increasing soil organic carbon, avoiding soil sealing, and avoiding soil erosion are the top three priorities across Europe. However, the perceived prioritisation of soil challenges differed both between and within regions, reflecting each country's specific soil health context. Divergences in perceptions between practitioners and other stakeholder groups underscore the need to develop actions aimed at better understanding the rationale behind such discrepancies and how to overcome them. In addition, other key challenges for achieving sustainable soil management across Europe include limited funding, policy incoherencies, poor knowledge dissemination and co-creation, and insufficient soil monitoring. Environmental factors influencing soil health, including climate change, together with governance and economic models, were perceived to be critical limitations to the adoption of sustainable management of agricultural soils. This study also emphasises the need for a diversity of engagement methods, policies, and system approaches to support a transition towards sustainable soil management. These findings underscore the need for future research agendas that focus on integrated knowledge and participatory approaches, and strategies involving societal awareness and policy alignment—key elements that have also informed broader strategies involving societal awareness and engagement towards sustainable soil management in Europe.

实施可持续土壤管理做法以增进土壤健康是整个欧洲研究和决策的优先事项。有必要确定欧洲不同利益相关者面临的主要土壤挑战,以及限制采用农业土壤可持续管理的关键威胁。本研究分析了参与欧洲土壤联合计划(EJP soil) 2020-2025的伙伴国的利益相关者对关键土壤挑战、知识缺口和农业土壤研究优先事项的看法。2024年,在EJP SOIL联盟的24个伙伴国家(分为中欧、北欧、南欧和西欧四个地区)开展了两项互补的利益相关者活动——一项调查和一次研讨会。在预先确定的10项土壤挑战中,研究结果强调,保持或增加土壤有机碳、避免土壤密封和避免土壤侵蚀是整个欧洲的三大优先事项。然而,对土壤挑战的优先次序的认识在区域之间和区域内都有所不同,这反映了每个国家具体的土壤健康背景。从业人员和其他利益相关者群体之间的观念分歧强调需要制定旨在更好地理解这些差异背后的基本原理以及如何克服这些差异的行动。此外,在整个欧洲实现可持续土壤管理的其他关键挑战包括资金有限、政策不连贯、知识传播和共同创造不力以及土壤监测不足。影响土壤健康的环境因素,包括气候变化,以及治理和经济模式,被认为是采用可持续农业土壤管理的关键限制因素。本研究还强调需要多样化的参与方法、政策和系统方法,以支持向可持续土壤管理的过渡。这些发现强调了未来研究议程的必要性,重点是综合知识和参与性方法,以及涉及社会意识和政策协调的战略——这些关键要素也为欧洲可持续土壤管理的社会意识和参与的更广泛战略提供了信息。
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引用次数: 0
Organic Carbon Storage Capacity by Association With Minerals in Tropical Alkaline Soils 热带碱性土壤有机碳储量与矿物质的关系
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-10-14 DOI: 10.1111/ejss.70213
Mayuko Seki, Eito Nonomura, Hidetoshi Miyazaki, Muniandi Jegadeesan, Pandian Kannan, Haruo Tanaka, Soh Sugihara

Soil organic carbon (SOC) is essential for maintaining soil functioning as well as for mitigating climate change. SOC stabilisation in mineral-associated organic matter (MAOM) fraction plays a key role, and MAOM distribution should be quantified in divergent environments to improve predictions of SOC dynamics. However, quantitative information on the OC storage capacity of MAOM based on MAOM distribution is still limited, especially in tropical alkaline soils, which might have a lower OC storage capacity because of weaker interactions between C and clay via cation bridges such as Ca and Mg, compared to common Al-, Fe-organo-metal complexes in tropical acidic soils. This study aimed to evaluate the OC storage capacity of MAOM based on the relationship between the mass proportion (%) and OC content in MAOM (g C kg−1 soil) in 46 tropical alkaline surface soils of southern India with variable soil types (Alfisols, Inceptisols, and Vertisols) and land uses (paddy fields, croplands, and bushes). Boundary line analysis was used to estimate the upper distribution of MAOM-C for our dataset, and the slope of the regression line (0.16, R1 = 0.16, p < 0.001) was substantially lower compared to that in a previous review of tropic soils (0.53, R1 = 0.46, p < 0.005) mainly conducted on acidic to neutral soils (Fujisaki et al., 2018). We found that MAOM-C content was positively correlated with Caex, Mgex, and clay, and was well predicted by Mgex both in a simple and multiple linear regression model. Considering the alkaline soil pH of dataset (8.0 ± 0.1), these results indicate that a lower OC storage capacity in this study might be attributed to the weaker interactions between OC and minerals via cation bridges in tropical alkaline soils. There were no significant differences in the slope of the linear regression lines between soil types and land uses, except that the slope in Alfisols was greater than that in Vertisols, and all the slopes were consistently lower than that of Fujisaki et al. (2018), similar to that of the boundary line analysis for the whole dataset. Our results provide direct evidence that tropical alkaline soils have a substantially lower organic carbon storage capacity as MAOM than that of tropical acidic to neutral soils. Further study is necessary to elucidate the factors controlling the low OC storage capacity in this area.

土壤有机碳(SOC)对于维持土壤功能和减缓气候变化至关重要。矿物伴生有机质(mineral - associated有机质,MAOM)组分中有机碳的稳定起着关键作用,MAOM在不同环境中的分布应该被量化,以提高对有机碳动态的预测。然而,基于MAOM分布的MAOM储OC能力的定量信息仍然有限,特别是在热带碱性土壤中,与热带酸性土壤中常见的Al -, Fe -有机-金属配合物相比,C与粘土之间通过阳离子桥(如Ca和Mg)的相互作用较弱,可能具有较低的OC储OC能力。在印度南部46种不同土壤类型(Alfisols、ineptisols和Vertisols)和土地利用(水田、农田和灌木)的热带碱性表层土壤中,基于MAOM (g C kg - 1土壤)质量比例(%)和OC含量(g C kg - 1土壤)之间的关系,评价MAOM的OC储存能力。使用边界线分析来估计我们数据集的MAOM‐C的上分布,回归线的斜率(0.16,R1 = 0.16, p < 0.001)大大低于之前主要在酸性至中性土壤上进行的热带土壤(0.53,R1 = 0.46, p < 0.005) (Fujisaki et al., 2018)。我们发现MAOM - C含量与Caex, Mgex和clay呈正相关,并且Mgex在简单和多元线性回归模型中都能很好地预测MAOM - C含量。考虑到数据集的碱性土壤pH值(8.0±0.1),这些结果表明,热带碱性土壤中OC与矿物质之间通过阳离子桥的相互作用较弱,可能是本研究中OC储存容量较低的原因。土壤类型和土地利用之间线性回归线的斜率没有显著差异,除了Alfisols的斜率大于Vertisols的斜率,并且所有斜率都始终低于Fujisaki等人(2018)的斜率,这与整个数据集的边界线分析相似。结果表明,热带碱性土壤的MAOM有机碳储量明显低于热带酸性至中性土壤。对该地区低储气量的控制因素有必要进一步研究。
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引用次数: 0
More Microbial Function Than Taxonomic Convergence in Soil Straw Decomposition 土壤秸秆分解的微生物功能大于分类收敛
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-10-08 DOI: 10.1111/ejss.70211
Haifeng Lin, Yuanyuan Bao, Ruirui Chen, Xin Zhou, Youzhi Feng

Bacteria and fungi are key agents in plant residue decomposition, and their roles are determined by their taxonomic and functional compositions. However, the spatiotemporal patterns of microbial diversity, particularly functional traits, remain poorly understood. To close this gap, we conducted a 16-week field-based rice straw burial experiment coupled with amplicon sequencing. Random forest (RF) analysis revealed that soil chemical properties (available potassium (AK), pH, and soil organic matter (SOM)) and climate factors (MAP and MAT) were the main predictors of bacterial and fungal taxonomic composition, explaining 46.9% and 27.3% of the variation, respectively. In contrast, the functional composition related to straw decomposition was less influenced, with these factors explaining 0% of the variation for bacteria and 31.4% for fungi. The distance–decay relationship (DDR) model further showed significant spatiotemporal differences in the taxonomic composition between straw-decomposing fungi and bacteria, with fungi exhibiting greater variability, as indicated by a steeper slope (−2E−04) than that for bacteria (−9E−05). However, the functional composition related to straw decomposition showed no significant spatiotemporal variation. Our results demonstrate that the taxonomic variability of straw-degrading bacteria and fungi is shaped by distinct environmental factors, whereas their functional composition remains stable across space and time, reflecting functional redundancy in terms of straw decomposition.

细菌和真菌是植物残渣分解的关键因子,它们的作用是由它们的分类和功能组成决定的。然而,微生物多样性的时空格局,特别是功能特征,仍然知之甚少。为了缩小这一差距,我们进行了为期16周的稻田秸秆掩埋实验,并结合扩增子测序。随机森林(RF)分析表明,土壤化学性质(速效钾(AK)、pH和土壤有机质(SOM))和气候因子(MAP和MAT)是细菌和真菌分类组成的主要预测因子,分别解释了46.9%和27.3%的变异。相比之下,与秸秆分解相关的功能组成受到的影响较小,这些因素对细菌和真菌的影响分别为0%和31.4%。距离-衰减关系(DDR)模型进一步显示了秸秆分解真菌和细菌在分类组成上的显著时空差异,真菌表现出更大的变异性,其斜率(- 2E−04)比细菌(- 9E−05)更陡。而与秸秆分解相关的功能组成没有明显的时空变化。研究结果表明,秸秆降解细菌和真菌的分类变异性受到不同环境因素的影响,而它们的功能组成在空间和时间上保持稳定,反映了秸秆分解的功能冗余。
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引用次数: 0
Functional Microbial Diversity and Soil Health Assessment in Organic and Conventional Rice-Jute Based Cropping Systems 有机与常规稻黄麻种植系统的功能微生物多样性与土壤健康评价
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-10-08 DOI: 10.1111/ejss.70212
Sonali Paul Mazumdar, Bijan Majumdar, Nurnabi Meherul Alam, Lipi Chattopadhyay, Debarati Datta, Sourav Ghosh, Subrata Satpathy, A. Shamna, S. K. Jha, Sabyasachi Mitra, Sanjoy Saha, Gouranga Kar

Knowledge about the structural and functional microbial diversity influencing the biochemical properties and biological processes of soils in rice-jute based cropping systems in Eastern India is limited. In the present study, the Biolog EcoPlate technique was used to evaluate microbial metabolic diversity in long-term organically managed (OM) and conventional (CM) rice-jute based cropping systems for predicting soil quality in farmers' fields in Eastern India. The six cropping systems that were undertaken for this study were rice-lentil-jute (OM), rice-mustard-jute (OM), rice-potato-jute (OM), rice-lentil-jute (CM), rice-mustard-jute (CM), and rice-potato-jute (CM). The results of the present study revealed significant improvement in total soil organic carbon (SOC), microbial biomass carbon (MBC), labile C or permanganate oxidizable C (KMnO4-C), soil enzymatic activities, carbon lability index (LI), carbon management index (CMI), and Soil Quality Index (SQI) in organic production systems compared to conventionally managed cropping systems. The average well colour development, utilisation of carbon substrates, Shannon-Weaver index (H), and Mcintosh (U) indices showed a significant variation among the cropping systems. Principal component analysis revealed a clear distinction between the organic and conventional production systems, suggesting that organically managed rice-jute based cropping systems have a more significant impact on microbial diversity compared to conventionally managed rice-jute based cropping systems. Furthermore, the results indicated a clear ranking of drivers, with management having a greater influence than crop rotation on soil abiotic and biotic properties, as even the rice-potato-jute system under organic management outperformed the rice-lentil-jute system under conventional practice. Among the cropping systems, rice-lentil-jute (OM) had the largest SOC, LI, CMI, Shannon-Weaver index, and Mcintosh indices, and SQI, followed by rice-mustard-jute (OM) and rice-potato-jute (OM). The present findings suggest that adopting the organically managed rice-lentil-jute system is pivotal for maintaining soil health and promoting agricultural sustainability in rice-jute based cropping systems and is highly recommended for the Eastern Indo-Gangetic Plains.

关于结构和功能微生物多样性影响印度东部水稻-黄麻种植系统土壤生化特性和生物过程的知识是有限的。在本研究中,biog EcoPlate技术用于评估长期有机管理(OM)和传统(CM)水稻-黄豆种植系统的微生物代谢多样性,以预测印度东部农民田地的土壤质量。本研究采用了水稻-扁豆-黄麻(OM)、水稻-芥菜-黄麻(OM)、水稻-土豆-黄麻(OM)、水稻-扁豆-黄麻(CM)、水稻-芥菜-黄麻(CM)和水稻-土豆-黄麻(CM)六种种植制度。结果表明,与常规耕作制度相比,有机生产制度显著提高了土壤总有机碳(SOC)、微生物生物量碳(MBC)、活性碳或高锰酸盐可氧化碳(KMnO4‐C)、土壤酶活性、碳不稳定性指数(LI)、碳管理指数(CMI)和土壤质量指数(SQI)。平均井色发育、碳基质利用率、Shannon - Weaver指数(H)和Mcintosh指数(U)显示了不同种植制度之间的显著差异。主成分分析揭示了有机和传统生产系统之间的明显区别,表明有机管理的水稻黄麻种植系统对微生物多样性的影响比传统管理的水稻黄麻种植系统更显著。此外,研究结果还显示了驱动因素的明确排序,其中管理对土壤非生物和生物特性的影响大于轮作,因为即使是有机管理下的水稻-马铃薯-黄麻系统也优于常规管理下的水稻-扁豆-黄麻系统。其中,水稻-小豆豆-黄麻(OM)的有机碳、LI、CMI、Shannon - Weaver指数、Mcintosh指数和SQI最大,其次是水稻-芥菜-黄麻(OM)和水稻-马铃薯-黄麻(OM)。目前的研究结果表明,采用有机管理的水稻-扁豆-黄麻系统对于维持土壤健康和促进以水稻-黄麻为基础的种植系统的农业可持续性至关重要,强烈推荐用于东印度-恒河平原。
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引用次数: 0
On-Farm Assessment of Long-Term Impacts of Regenerative Management on Vineyard Soil Health 再生管理对葡萄园土壤健康长期影响的田间评估
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-10-06 DOI: 10.1111/ejss.70207
Lauren Picone, Priya Verma, Corinne Butler, Kerri Steenwerth, Matthew J. Grieshop, Cristina Lazcano, Charlotte Decock

Soil health is central to sustainable agriculture and a key goal of regenerative and organic farming. However, monitoring changes in soil health remains challenging due to the lack of regionally relevant benchmarks and context-specific indicators. This study assessed the impacts of long-term and combined regenerative management practices on soil health across 87 California vineyards with diverse management histories, microclimates, and soils. Three key indicators, including aggregate stability, mineralizable carbon, and soil organic carbon, were used to develop region-specific soil health scoring functions. These were adapted from Cornell's Comprehensive Assessment of Soil Health and the Soil Health Institute frameworks. Indicator values generally trended lower than existing benchmarks, emphasizing the need for crop- and region-specific scoring systems. Results from mixed-effects models and fuzzy-set qualitative comparative analysis (fsQCA) indicate that long-term cover cropping (≥ 10 years) was the most consistent driver of high soil health scores, especially when combined with other practices. Livestock integration improved soil organic carbon and mineralizable carbon scores in under 10 years, showing potential to accelerate soil health benefits. Our results highlight the importance of tailoring practices to local soil and climate conditions. Findings also support the development of more flexible, regionally informed soil health frameworks.

土壤健康是可持续农业的核心,也是再生农业和有机农业的关键目标。然而,由于缺乏区域相关基准和具体情况指标,监测土壤健康变化仍然具有挑战性。本研究评估了加州87个不同管理历史、小气候和土壤的葡萄园的长期和综合再生管理实践对土壤健康的影响。三个关键指标,包括团聚体稳定性、矿化碳和土壤有机碳,用于开发特定区域的土壤健康评分函数。这些都改编自康奈尔大学土壤健康综合评估和土壤健康研究所的框架。指标值普遍低于现有基准,强调需要针对特定作物和地区的评分系统。混合效应模型和模糊集定性比较分析(fsQCA)的结果表明,长期覆盖种植(≥10年)是高土壤健康评分最一致的驱动因素,特别是当与其他实践相结合时。畜牧业整合在不到10年的时间内改善了土壤有机碳和矿化碳得分,显示出加速土壤健康效益的潜力。我们的研究结果强调了根据当地土壤和气候条件定制实践的重要性。研究结果还支持制定更灵活、区域知情的土壤健康框架。
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引用次数: 0
Mapping of Acid Sulfate Soil Types in Laihianjoki River Catchment: A Multiclass Classification 莱希安约基河流域硫酸土壤类型的多类分类
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-10-06 DOI: 10.1111/ejss.70204
Virginia Estévez, Stefan Mattbäck, Anton Boman

Mapping of acid sulfate soils (ASS) has in the past focused mainly on ASS probability maps, which are very useful to avoid environmental damage caused by these soils. However, these maps do not indicate the ASS subtypes, which may have different environmental impacts depending on whether they are actively releasing acidity and metals (sulfuric soils) or have the potential to do so (hypersulfidic soils) if the sulfidic material within them is disturbed (oxidized). Additionally, there is a particular type of soil that is close to being classified as an ASS, but where the pH criterion is not fulfilled. This soil is referred to as para-ASS and may have a similar negative environmental impact as ASS. In the risk assessment of ASS, it is therefore crucial to know the location of ASS subtypes as well as para-ASS. In this study, we have created for the first time a multiclass map of ASS subtypes in Finland. Furthermore, four probability maps have been generated, one for each class. For this, the suitability of two machine learning methods for multiclass classification of different ASS subtypes has been evaluated. The methods are random forest (RF) and gradient boosting (GB), which showed very high capabilities for the classification of ASS in binary classification. RF has given the best results with F1-score values between 71% and 80% for the four classes. An accurate and realistic multiclass map of the ASS subtypes has been created using the RF model.

以往的硫酸酸性土壤制图主要集中在硫酸酸性土壤的概率图上,这对于避免硫酸酸性土壤对环境造成的破坏是非常有用的。然而,这些地图并没有显示ASS亚型,这些亚型可能会产生不同的环境影响,这取决于它们是主动释放酸性和金属(含硫土壤),还是有可能这样做(高硫化物土壤),如果其中的硫化物物质受到干扰(氧化)。此外,有一种特殊类型的土壤接近被归类为有害土壤,但其pH值不符合标准。这种土壤被称为para - ASS,可能具有与ASS相似的负面环境影响。因此,在ASS风险评估中,了解ASS亚型和para - ASS的位置至关重要。在这项研究中,我们首次在芬兰创建了ASS亚型的多类地图。此外,还生成了四个概率图,每个类一个。为此,评估了两种机器学习方法对不同ASS亚型的多类分类的适用性。随机森林(random forest, RF)和梯度增强(gradient boosting, GB)两种方法在二值分类中表现出很高的分类能力。RF给出了四个类别的最佳结果,F1得分值在71%到80%之间。使用RF模型创建了准确而真实的ASS亚型多类图。
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引用次数: 0
Increasing Straw Addition Induces a Relay Effect of Forces Driving Fixed Ammonium Release 秸秆添加量的增加引起了驱动固定铵释放力的接力效应
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-10-02 DOI: 10.1111/ejss.70209
Zhuqing Xia, Wantai Yu, Shuailin Li, Mengmeng Zhu, Changrui Zhou, Yun Gao, Xinhui Zhang, Xiao Jiang, Qiang Ma

The release of fixed ammonium (NH4+) is likely related to the concentration of exchangeable NH4+ and is regulated by various microbial processes, which are affected by the changes in soil carbon (C) and nitrogen (N) sources that are caused by straw addition. This increases the need to clarify the dose effects of straw on the release of fixed NH4+ and the fate of fixed NH4+-derived N. In this study, the fixed NH4+ pool of an Alfisol was labelled with 15N under chloroform fumigation, and then the labelled soil (fumigated) was mixed with untreated soil (unfumigated) and incubated for 288 days with four rates of straw addition: S0 (no straw), S4 (4 t ha−1), S8 (8 t ha−1), and S12 (12 t ha−1). The addition of a low amount of straw (4 t ha−1) promoted the release of labelled fixed NH4+, whereas greater amounts of straw (8 and 12 t ha−1) resulted in inhibition. By the end of incubation, 63% of the fixed NH4+-derived N had been transformed into nitrate-N in S0, whereas this percentage significantly decreased in straw treatments. The percentage of the fixed NH4+-derived N that transformed into organic N increased from 23% to 61% with increasing straw addition. The soil total C content was the primary factor influencing the release of fixed NH4+ in S0, and nitrification was responsible for this in S4. For S8 and S12, microbial immobilisation, succeeding nitrification, became the dominant driving factor for fixed NH4+ release. These results indicated that there is a relay effect between soil C source, nitrification, and microbial immobilisation on fixed NH4+ release with increasing straw addition. These results are helpful for improving the understanding of the relay effect of factors that drive fixed NH4+ release in Alfisols with increasing straw addition and provide a basis for optimising the straw management.

固定铵(NH4+)的释放可能与交换态NH4+的浓度有关,受秸秆添加引起的土壤碳(C)源和氮(N)源变化影响的多种微生物过程调控。这增加了澄清稻草对固定NH4+释放的剂量效应和固定NH4+衍生n的命运的必要性。在本研究中,在氯仿熏蒸下,用15N标记Alfisol固定NH4+池,然后将标记土壤(熏蒸)与未处理土壤(未熏蒸)混合,并以四种稻草添加率:S0(无稻草),S4 (4 t ha−1),S8 (8 t ha−1)和S12 (12 t ha−1)孵育288天。添加少量秸秆(4 t ha - 1)促进了标记固定NH4+的释放,而添加大量秸秆(8和12 t ha - 1)则导致抑制。在孵育结束时,63%的固定NH4+衍生N在so0中转化为硝酸盐,而秸秆处理的这一比例显著降低。随着秸秆添加量的增加,固定NH4+衍生N转化为有机N的比例从23%增加到61%。土壤全C含量是影响S0固定NH4+释放的主要因素,而S4的硝化作用起主要作用。对于S8和S12,微生物固定化和随后的硝化作用成为固定NH4+释放的主要驱动因素。这些结果表明,随着秸秆添加量的增加,土壤C源、硝化作用和微生物固定化对固定NH4+释放存在接力效应。这些结果有助于加深对苜蓿中固定NH4+释放驱动因子随秸秆添加量增加的接力效应的认识,并为秸秆管理的优化提供依据。
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引用次数: 0
Optimization of Protein Quantification From Soil Samples 土壤样品中蛋白质定量的优化
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-10-01 DOI: 10.1111/ejss.70210
M. Waibel, M. Tuohy, E. Paterson, B. Thornton, F. Brennan, F. Abram

Protein profiling of soil samples has the potential to enhance our understanding of soil ecosystems and guide the development of sustainable soil management practices. In that context, there is a need to develop robust proteomic workflows, starting with reliable protein quantification. Total protein quantification with the Lowry assay is a relatively easy, rapid, and cheap method, but requires interference corrections due to reactivity with a wide range of compounds that occur in soil, plant, and other biological matrices. Here, we propose sample-specific corrections for soil protein extracts. We benchmarked our approach against other protein quantification methods, including other Lowry corrections, total hydrolysable amino acids, and Qubit total protein assay. Our sample-specific Lowry corrections did not overestimate or underestimate protein content when compared to the other methods tested. As a practical contribution, this work provides a calibration method for the Lowry assay using protein reference values in a multivariate regression approach to enable simple and high-throughput total protein quantification of soil samples.

土壤样品的蛋白质分析有可能增强我们对土壤生态系统的理解,并指导可持续土壤管理实践的发展。在这种情况下,需要从可靠的蛋白质定量开始,开发强大的蛋白质组学工作流程。用Lowry法定量总蛋白是一种相对简单、快速和廉价的方法,但由于与土壤、植物和其他生物基质中出现的各种化合物的反应性,需要进行干扰校正。在这里,我们提出了土壤蛋白质提取物的样品特异性校正。我们将我们的方法与其他蛋白质定量方法进行了基准比较,包括其他Lowry校正,总水解氨基酸和Qubit总蛋白测定。与其他测试方法相比,我们的样品特异性Lowry校正没有高估或低估蛋白质含量。作为一个实际的贡献,这项工作提供了一种校正方法,在多元回归方法中使用蛋白质参考值,以实现土壤样品的简单和高通量总蛋白质定量。
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引用次数: 0
Microbial Enzyme Activities Drive CO2 and CH4 Emissions During Freeze–Thaw Cycles in Peatlands 冻融循环中泥炭地微生物酶活性驱动CO2和CH4排放
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-09-28 DOI: 10.1111/ejss.70206
Jiahong Sun, Zicheng Yu, Yanmin Dong, Shengzhong Wang, Junxiao Pan, Shasha Liu, Ziping Liu, Hongkai Li, Zhiwei Xu

Climate change is projected to intensify freeze–thaw cycles (FTCs) in the peatlands of Changbai Mountain, influencing soil biogeochemistry and carbon cycling. In order to elucidate microbial regulation of carbon emissions during FTCs, we performed controlled laboratory simulations using soils from a peatland in the Changbai Mountains, Northeast China. Our findings indicate that after 15 FTCs with small (−5°C to 5°C) and large amplitudes (−10°C to 10°C), the carbon dioxide (CO2) emission rates from surface soils declined by 63.8% and 64.2%, respectively, compared to the constant-temperature control; in deeper soils, the respective declines were 27.5% and 50.9%. We found that oxidase activities were negatively correlated with CO2 emissions during FTCs and served as the primary driver of these emissions. Methane (CH4) was oxidized during FTCs, with oxidation rates inversely related to FTC amplitude and greater under small amplitude than large amplitude conditions. Soil hydrolase activities were negatively correlated with CH4 oxidation rates, functioning as the primary regulators of methane oxidation. The carbon emissions were subsequently influenced by microbial phospholipid fatty acids, which modulated enzyme activities. This investigation comprehensively explores the interactive effects of soil enzymes, organic carbon fractions, and microbial community composition on carbon emissions. The results underscore the central role of soil enzymes in mediating these processes. Collectively, these findings provide novel insights into the microbial mechanisms governing greenhouse gas emissions from peatlands during FTCs.

气候变化加剧了长白山泥炭地冻融循环,影响了土壤生物地球化学和碳循环。为了阐明微生物对碳排放的调控作用,我们利用中国东北长白山泥炭地的土壤进行了受控的实验室模拟。研究结果表明,与恒温控制相比,经过15次小(- 5°C至5°C)和大(- 10°C至10°C)的FTCs后,表层土壤的二氧化碳(CO2)排放率分别下降了63.8%和64.2%;在较深的土壤中,分别下降了27.5%和50.9%。我们发现氧化酶活性与碳排放呈负相关,是碳排放的主要驱动因素。甲烷(CH4)在FTC过程中被氧化,氧化速率与FTC振幅成反比,且在小振幅条件下比大振幅条件下更大。土壤水解酶活性与CH4氧化速率呈负相关,是甲烷氧化的主要调节因子。碳排放随后受到微生物磷脂脂肪酸的影响,磷脂脂肪酸调节了酶的活性。本研究全面探讨了土壤酶、有机碳组分和微生物群落组成对碳排放的交互作用。结果强调了土壤酶在这些过程中的中心作用。总的来说,这些发现为在气候变化期间控制泥炭地温室气体排放的微生物机制提供了新的见解。
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引用次数: 0
Soil Carbon Conservation in Anoxic Microsites in 'Natural Vegetation Land' Was Higher Than in 'Artificially Managed Land' “自然植被地”缺氧微生境土壤碳保持力高于“人工管理地”
IF 3.8 2区 农林科学 Q2 SOIL SCIENCE Pub Date : 2025-09-25 DOI: 10.1111/ejss.70201
XuSheng Zhang, Xia Wang, YunFei Zhao, Jia Li, MengHan Yuan, LiuJun Li, YaZhen Li, YaRong Zhang

Anoxic microsites in soil may lead to oxygen limitation even in well-aerated upland soils, which consequently impedes the rate of soil carbon loss. Nonetheless, the influence of various land use types on the carbon conservation potential within anoxic microsites, which is referred to here as 'anoxic protection', remains poorly understood. This investigation categorizes four land use types on upland soil into two groups based on the level of human influence, with natural shrubland and natural grassland classified as 'natural vegetation land' and farmland and planted forest designated as 'artificially managed land'. The extent of anoxic protection (EAP), which quantifies the contribution of anoxic microsites to soil organic carbon (SOC) preservation, was determined by assessing carbon dioxide (CO2) efflux rates before and after aeration during soil incubation assays, with gas chromatography serving as the measurement technique. The EAP was 33.5% and 36% of natural shrubland and natural grassland, respectively. Planted forest exhibited a lower protection value at 15.9%, while farmland exhibited the most negligible anoxic protection at −8.9%, which is presumed to be due to agricultural practice-induced soil disruptions. In upland soils, the EAP was positively associated with anoxic bacterial activity, while methanogen DNA abundance was inversely correlated with the oxygen diffusion capacity. The findings indicate that a stable physical soil structure is essential for strong anoxic protection. Even in natural grasslands, where oxygen availability is ample, anoxic microsites enhance the activity of anoxic bacteria and reduce CO2 emissions by over one-third compared to a fully aerobic environment, thereby offering increased protection for organic matter susceptible to decomposition under aerobic conditions.

即使在通风良好的山地土壤中,土壤中的缺氧微位点也可能导致氧气限制,从而阻碍土壤碳损失的速度。尽管如此,各种土地利用类型对缺氧微站点内碳保护潜力的影响,在这里被称为“缺氧保护”,仍然知之甚少。本次调查根据人类影响程度,将旱地土壤的四种土地利用类型分为两类,将天然灌丛和天然草地归为“天然植被地”,将农田和人工林归为“人工经营地”。缺氧保护程度(EAP)量化了缺氧微生物位点对土壤有机碳(SOC)保存的贡献,通过评估土壤培养试验中曝气前后的二氧化碳(CO2)流出率来确定,并采用气相色谱法作为测量技术。天然灌丛和天然草地的EAP分别为33.5%和36%。人工林表现出较低的保护价值,为15.9%,而农田表现出最可忽略不计的缺氧保护价值,为- 8.9%,这被认为是由于农业实践引起的土壤破坏。在旱地土壤中,EAP与缺氧细菌活性呈正相关,而甲烷菌DNA丰度与氧扩散能力呈负相关。研究结果表明,稳定的土壤物理结构对强缺氧保护至关重要。即使在氧气供应充足的天然草原上,与完全有氧环境相比,缺氧微生物位点也能提高缺氧细菌的活性,减少超过三分之一的二氧化碳排放,从而为有氧条件下易分解的有机物提供更好的保护。
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引用次数: 0
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European Journal of Soil Science
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