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Microbial mechanism of soil organic carbon content under waterlogging and water table fluctuation in drained peat soils 涝渍和地下水位波动对排干泥炭土土壤有机碳含量的微生物机制
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-13 DOI: 10.1016/j.ejsobi.2025.103773
Xiaohan Li , Yang Wang , Jiye Cai , Guangyuan Xu , Hongkai Li , Yanmin Dong , Shasha Liu , Ziping Liu , Shengzhong Wang , Zhiwei Xu
Peatlands serve as crucial reservoirs within the global carbon cycle; however, widespread degradation has led to significant reductions in soil organic carbon (SOC) contents. The effects of rewetting on the active SOC and the underlying microbial mechanisms in degraded peatlands are still not fully elucidated. This study examined changes in bulk and active SOC contents, as well as microbial community composition and enzyme activities via controlled water table (WT) manipulation in intact peat columns sourced from drained sites in the Changbai Mountains. The results demonstrated that variations in WT significantly influenced microbial biomass and enzymatic activities within the surface soil layer. Waterlogging resulted in decreased total bacterial and actinomycete biomass, accompanied by a marked increase in fungal biomass, especially under WT fluctuation. Soil oxidase and hydrolase activities only increased significantly under WT fluctuation treatments. SOC contents rose under waterlogged conditions but declined with WT fluctuation. Both dissolved organic carbon (DOC) and microbial biomass carbon were elevated in surface soils subjected to waterlogged and WT fluctuation compared to those in drained peat. However, the easily oxidizable carbon contents were only elevated in surface soils subjected to waterlogged treatments compared to those in drained peat. Soil moisture content had the greatest positive influence, while pH had the greatest negative influence on SOC contents. Actinomycete and DOC had negative impacts on SOC contents under varied WT conditions. This study clarifies the regulatory influence of WT on microbial community dynamics and enzyme activities relevant to SOC storage in degraded peatlands, highlighting the importance of WT management for effective peatland restoration.
泥炭地是全球碳循环的重要储存库;然而,广泛的退化导致土壤有机碳(SOC)含量显著降低。复湿对退化泥炭地活性有机碳的影响及其潜在的微生物机制尚不完全清楚。通过控制地下水位(WT)的方法,研究了长白山干枯土壤中完整泥炭柱的有机碳含量、活性有机碳含量、微生物群落组成和酶活性的变化。结果表明,WT的变化对土壤表层微生物生物量和酶活性有显著影响。涝渍导致细菌和放线菌总生物量下降,真菌生物量显著增加,尤其是在WT波动下。土壤氧化酶和水解酶活性仅在WT波动处理下显著增加。土壤有机碳含量在淹水条件下呈上升趋势,但随WT波动而下降。受涝渍和WT波动影响的表层土壤溶解有机碳(DOC)和微生物生物量碳均高于排水泥炭。然而,与排水泥炭相比,淹水处理仅使表层土壤的易氧化碳含量升高。土壤含水量对有机碳含量的正向影响最大,pH对有机碳含量的负向影响最大。放线菌和DOC对土壤有机碳含量有负向影响。本研究阐明了WT对退化泥炭地微生物群落动态和与有机碳储量相关的酶活性的调控作用,强调了WT管理对有效恢复泥炭地的重要性。
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引用次数: 0
How arbuscular mycorrhizal fungus alters plant-soil feedback affecting biomass production in conspecific and heterospecific plants 丛枝菌根真菌如何改变影响同种和异种植物生物量生产的植物-土壤反馈
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-25 DOI: 10.1016/j.ejsobi.2025.103779
Xu Han , Tingting Xia , Kaiping Shen , Bangli Wu , Yuejun He
The interactions of plants and soil mediated by arbuscular mycorrhizal (AM) fungi usually cause changes in soil biotic and abiotic conditions, further shifting subsequent plant performance during the plant-soil feedback (PSF). AM fungal propagules can initiate colonization to establish symbiosis that modulates host growth and soil nutrient availability. However, how AM fungi affect symbiotic performance and soil nutrients via fungal propagules to drive PSF remains unclear. In the present study, a PSF experiment was conducted, in which two grasses and two forbs were planted into pots with or without AM fungus Funneliformis mosseae to create conditioned soil substrates. Subsequently, these plants were planted separately into the conditioned soil substrates in feedback phase. The results showed that AM propagule legacy of the soil conditioning phase was positively related to mycorrhizal colonization, soil hyphal length and spores of the feedback phase. Mycorrhizal colonization and hyphal length were greater in forbs than in grasses in the feedback phase. AM fungus significantly promoted plant biomass production. Simultaneously, AM fungus enhanced positive feedback for forbs and negative feedback for grasses, but the mycorrhizal promotion on biomass production differently decreased in conspecific and heterospecific soils over time. Moreover, AM fungus altered soil nutrient legacy in the PSF. The structural equation model further presented that AM fungal performance was primarily determined by previous AM propagules, while the AM fungal performance and subsequent soil nutrients exerted direct and indirect promotions on the PSF of biomass production. We concluded that AM fungus promotes PSF of biomass production by modulating soil nutrients, with persistent contributions to biomass production in conspecific and heterospecific plants decreasing over time. This study highlights the persistent contribution of AM fungi in driving PSF process, which contributes to understanding the dynamic mechanisms of plant-mycorrhizae-soil interactions in the natural community.
丛枝菌根(AM)真菌介导的植物与土壤的相互作用通常会引起土壤生物和非生物条件的变化,从而在植物-土壤反馈(PSF)过程中进一步改变随后的植物性能。AM真菌繁殖体可以启动定殖,建立共生关系,调节寄主生长和土壤养分有效性。然而,AM真菌如何通过真菌繁殖体影响共生性能和土壤养分来驱动PSF仍不清楚。在本研究中,进行了一项PSF试验,将两种禾草和两种草本植物种植在有或没有AM真菌的花盆中,以形成条件土壤基质。随后,在反馈阶段将这些植物分别种植在条件土壤基质中。结果表明,土壤调节期AM繁殖体遗产与菌根定植、土壤菌丝长度和反馈期孢子数量呈正相关。在反馈阶段,牧草的菌根定植量和菌丝长度大于牧草。AM真菌对植物生物量产量有显著促进作用。同时,AM真菌增强了对牧草的正反馈和负反馈,但随着时间的推移,菌根对生物量生产的促进作用在同种和异种土壤中有不同程度的降低。此外,AM真菌改变了PSF土壤的养分遗产。结构方程模型进一步表明,AM真菌性能主要由AM繁殖体决定,AM真菌性能和随后的土壤养分对生物量生产的PSF有直接和间接的促进作用。我们得出结论,AM真菌通过调节土壤养分来促进生物量生产的PSF,随着时间的推移,AM真菌对同种和异种植物生物量生产的持续贡献逐渐减少。本研究强调AM真菌在驱动PSF过程中的持续贡献,这有助于理解自然群落中植物-菌根-土壤相互作用的动态机制。
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引用次数: 0
Soil extracellular enzyme stoichiometry reveals the nutrient limitations of soil microbial metabolism under precipitation changes in Ningxia desert steppe of China 土壤胞外酶化学计量揭示了降水变化下宁夏荒漠草原土壤微生物代谢的养分限制
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-26 DOI: 10.1016/j.ejsobi.2025.103774
Jiali Lian , Jing Chen , Cui Han , Ying Zhao , Xueqin Yang , Jianping Li
Soil microbial communities and extracellular enzyme activity in arid ecosystems are highly sensitive to precipitation changes, yet their metabolic responses remain poorly understood. Through a field precipitation experiment in the Ningxia's desert steppe, we found that increased precipitation significantly enhanced C-, N-, and P-acquiring enzyme activities, with extracellular enzyme stoichiometry revealing microbial P limitation. Soil microbial communities were dominated by the phyla Actinobacteriota, Chloroflexi, and Proteobacteria (bacteria) and Ascomycota (fungi) under altered precipitation. Structural equation modeling (SEM) revealed that biotic factors (community structure/diversity) exerted stronger control over metabolic limitations than abiotic factors, with P limitation surpassing C limitation. These findings highlight P availability as a critical constraint on microbial function in arid grasslands. Our study provides actionable insights for grassland restoration, suggesting targeted P fertilization could mitigate microbial nutrient limitations and enhance ecosystem resilience under climate change.
干旱生态系统中土壤微生物群落和胞外酶活性对降水变化高度敏感,但其代谢响应尚不清楚。通过宁夏荒漠草原的田间降水试验,我们发现,降水增加显著提高了C-、N-和P获取酶的活性,胞外酶化学计量揭示了微生物P的限制。降水变化条件下土壤微生物群落以放线菌门、绿菌门、变形菌门和子囊菌门为主。结构方程模型(SEM)显示生物因子(群落结构/多样性)对代谢限制的控制强于非生物因子,P限制大于C限制。这些发现强调了磷有效性是干旱草原微生物功能的关键制约因素。我们的研究为草地恢复提供了可操作的见解,表明有针对性的磷施肥可以缓解微生物营养限制,增强气候变化下的生态系统恢复能力。
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引用次数: 0
Effects of low-density polyethylene microplastics on soil functions and microbial communities across soil depths 低密度聚乙烯微塑料对不同深度土壤功能和微生物群落的影响
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-30 DOI: 10.1016/j.ejsobi.2025.103778
Jing Lu , Yongfen Long , Bin Hou , Xuetao Guo , Yu Zhang , Hongjuan Bai , Yating Jia
The ecological risks posed by soil microplastics contamination have become a growing global concern. Although the effect of microplastics on topsoil physicochemical properties and microbial composition have attracted attention, variations in enzyme activities and microbial succession across different soil depths remain unexplored. In this study, a two-month incubation experiment was conducted to assess the effects of low-density polyethylene microplastics (LDPE-MP) at varying concentrations (0.5 % and 2.0 %) on enzyme activities and microbial communities across vertical soil profiles. The results indicated that LDPE-MP improved the activities of urease and fluorescein diacetate esterase (FDAse) while inhibiting alkaline phosphatase (AKP), with these effects showing limited concentration-dependent patterns within the tested range. Furthermore, LDPE-MP decreased the species richness and α-diversity of bacterial community, primarily impacting non-dominant taxa rather than keystone species. This selective perturbation weakened microbial network interactions, diminishing community complexity and ecological stability. Notably, LDPE-MP stimulated the proliferation of cooperative metabolic genera (including denitrifying bacteria, carbon catabolism bacteria, and MP degradation bacteria), but competitively inhibited the growth of nitrogen-fixing and assimilation bacteria and phosphate conversion bacteria. These alterations might potentially alter nitrogen/carbon cycle and soil fertility. Interestingly, these effects are more pronounced in the topsoil than subsurface soil, indicating that their adverse impacts at the subsurface soil layer are mitigated. In addition, synergistic relationships were observed between MP-associated bacteria and taxa producing FDAse/urease, explaining enhanced MP physicochemical alterations in topsoil. The study underscored how microplastics exposure impact the soil bacterial communities and soil functions by restructuring the microbial interaction network across soil depths.
土壤微塑料污染带来的生态风险已成为全球日益关注的问题。虽然微塑料对表层土壤理化性质和微生物组成的影响已引起人们的关注,但不同深度土壤中酶活性和微生物演为的变化尚未得到研究。在这项研究中,进行了为期两个月的培养实验,以评估不同浓度(0.5%和2.0%)的低密度聚乙烯微塑料(LDPE-MP)对垂直土壤剖面上酶活性和微生物群落的影响。结果表明,LDPE-MP提高了脲酶和荧光素二乙酸酯酶(FDAse)的活性,抑制了碱性磷酸酶(AKP)的活性,但这些作用在试验范围内呈有限的浓度依赖性。此外,LDPE-MP降低了细菌群落的物种丰富度和α-多样性,主要影响非优势分类群,而不是关键物种。这种选择性扰动削弱了微生物网络的相互作用,降低了群落的复杂性和生态稳定性。值得注意的是,LDPE-MP刺激了协同代谢属(包括反硝化细菌、碳分解代谢细菌和MP降解细菌)的增殖,但竞争性地抑制了固氮同化细菌和磷酸盐转化细菌的生长。这些变化可能潜在地改变氮/碳循环和土壤肥力。有趣的是,这些影响在表层土壤中比在地下土壤中更为明显,这表明它们对地下土层的不利影响得到了缓解。此外,MP相关细菌与产生FDAse/脲酶的类群之间存在协同关系,解释了表层土壤中MP的物理化学变化。该研究强调了微塑料暴露如何通过重组土壤深处的微生物相互作用网络来影响土壤细菌群落和土壤功能。
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引用次数: 0
Changes in trait assemblages of oribatid mite communities during natural succession on post-mining sites 矿区自然演替过程中甲螨群落性状组合的变化
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-22 DOI: 10.1016/j.ejsobi.2025.103777
Andrés A. Salazar-Fillippo , Rudy van Diggelen , Jozef Stary , Ladislav Miko , Jan Frouz
Mining severely impacts ecosystems, yet our understanding of how biotic communities and environmental conditions co-develop during post-disturbance recovery remains limited. This knowledge is crucial for assessing restoration efforts in post-mining sites, which also offer ideal conditions to study how the ecosystem assembles during succession. This is particularly relevant for soil communities that are often overlooked but play a pivotal role in ecological processes. Here we use trait-based approaches to describe the response of soil community adaptations to the changing environment. We used a chronosequence of unreclaimed post-mining sites in the northwest borders of the Czech Republic, spanning four age ranges: 1–10 years, 11–20 years, 21–30 years, and 31–41 years since brown coal extraction. We focused on oribatid mites and assessed community-level trait syndromes using three complementary approaches: functional diversity metrics, RLQ, and fourth corner. We found five traits responding to the environmental gradient: mean body length, concealability, reproductive mode, sensillus shape, and sclerotization. These traits shaped oribatid mite communities in response to specific environmental parameters, revealing distinct groups of pioneers, mid-, and late-colonizers with varying ecological adaptations. Our results indicate that environmental constraints affecting traits separately may homogenise oribatid mite communities into ecomorphological groups during different successional stages. This approach highlights a strong and integral association of oribatid mites with ecosystem development following major disturbance. These outcomes show how soil communities can describe successional trajectories in post-mining sites and may thus support the assessment of restoration projects through complementary biomonitoring.
采矿严重影响生态系统,但我们对生物群落和环境条件如何在干扰后恢复过程中共同发展的理解仍然有限。这些知识对于评估采矿后遗址的恢复工作至关重要,也为研究演替过程中生态系统如何聚集提供了理想的条件。这对于经常被忽视但在生态过程中发挥关键作用的土壤群落尤其重要。本文采用基于性状的方法来描述土壤群落对环境变化的适应反应。我们使用了捷克共和国西北边界未开垦的采矿后地点的时间序列,跨越四个年龄范围:自褐煤开采以来的1-10年,11-20年,21-30年和31-41年。我们集中研究了甲螨,并使用三种互补的方法评估了社区水平的特征综合征:功能多样性指标、RLQ和第四角。结果表明:平均体长、隐蔽性、生殖方式、感受器形状和硬化性与环境梯度有关。这些特征在特定的环境参数下形成了甲螨群落,揭示了具有不同生态适应性的先驱者、中期和晚期殖民者的不同群体。研究结果表明,不同演替阶段的环境因素可能使甲螨群落同质化,形成不同的生态形态群。这种方法强调了在重大干扰后,甲螨与生态系统发展的强大和完整的联系。这些结果表明,土壤群落可以描述采矿后场地的演替轨迹,从而可以通过补充生物监测来支持恢复项目的评估。
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引用次数: 0
Linking microbial community assembly to β-diversity and soil respiration under canopy nitrogen addition and understory removal in a subtropical forest 亚热带林冠氮添加和林下植被去除下微生物群落组合与β-多样性和土壤呼吸的关系
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-11-01 DOI: 10.1016/j.ejsobi.2025.103783
Debao Li , Yan Li , Haibian Xu , Jianping Wu
Biodiversity plays a crucial role in regulating ecosystem functions. However, the contribution of β-diversity to ecosystem functioning remains less well understood than that of α-diversity, especially in the context of global change. Here, we evaluated the impact of nitrogen addition and understory removal on the association between soil microbial β-diversity and soil respiration in a subtropical planted forest using a five-year factorial experiment. Four treatments were compared: a control, canopy nitrogen addition (2.5 g N m−2 year−1), understory removal, and nitrogen addition combined with understory removal. We found that both understory removal and nitrogen addition significantly altered the soil temperature, moisture, nutrient availability, and pH, leading to strong environmental filtering. This strengthened the role of deterministic processes (i.e., homogeneous selection) in bacterial community assembly. The dominance of homogeneous selection in community assembly reduced bacterial β-diversity. By contrast, nitrogen addition and understory removal did not impact soil fungal community assembly or β-diversity. In addition, soil bacterial β-diversity correlated positively with respiration, unlike fungal β-diversity, which showed no link. Our findings suggest that local-scale disturbances can disrupt bacterial-driven ecosystem processes in forest plantation. Furthermore, the presence of understory vegetation can at least partially mitigate the effects of nitrogen deposition on soil bacterial β-diversity and soil respiration. Therefore, the preservation of understory vegetation may sustain soil functional diversity in plantations experiencing high rates of nitrogen deposition.
生物多样性在调节生态系统功能中起着至关重要的作用。然而,与α-多样性相比,β-多样性对生态系统功能的贡献仍然较少,特别是在全球变化的背景下。通过5年因子试验,研究了氮添加和林下植被去除对亚热带人工林土壤微生物β多样性与土壤呼吸关系的影响。对照、冠层加氮(2.5 g N m−2年−1年)、去除林下植被、加氮+去除林下植被4种处理进行了比较。研究发现,林下植被去除和氮素添加均显著改变了土壤温度、湿度、养分有效性和pH值,导致了强烈的环境过滤作用。这加强了确定性过程(即同质选择)在细菌群落组装中的作用。群落组装中同质选择的优势降低了细菌β多样性。氮素添加和林下植被去除对土壤真菌群落组合和β多样性没有影响。土壤细菌β多样性与呼吸作用呈显著正相关,而真菌β多样性与呼吸作用无显著正相关。我们的研究结果表明,局部尺度的干扰可以破坏森林人工林中细菌驱动的生态系统过程。此外,林下植被的存在至少可以部分缓解氮沉降对土壤细菌β多样性和土壤呼吸的影响。因此,在高氮沉降速率的人工林中,保护林下植被可以维持土壤功能的多样性。
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引用次数: 0
Assembly processes, ecological strategies, and functional potentials of abundant and rare microbial taxa in biological soil crusts from two habitats in arid ecosystems 干旱生态系统两种生境生物土壤结皮中丰富和稀有微生物类群的聚集过程、生态策略及功能潜力
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-11-11 DOI: 10.1016/j.ejsobi.2025.103786
Yansong Wang, Zengru Wang, Yubing Liu
Biological soil crusts (BSCs) cover approximately 40 % of arid and semi-arid lands and are pivotal for terrestrial biogeochemical cycling. Bacteria and fungi constitute the main active constituents of BSC microbial communities, with abundant and rare taxa playing distinct roles. We investigated differences in assembly processes, adaptive strategies, and functional potential between abundant and rare bacterial and fungal taxa across BSC developments in two distinct habitats—the nutrient-poor Tengger Desert and the relatively fertile Loess Plateau. Our results reveal that stochastic dispersal limitation chiefly dominates abundant and permanently rare bacterial taxa in both habitats. In contrast, homogeneous selection dominated transiently and conditionally rare taxa, while deterministic selection pressure was more pronounced in the Tengger Desert owing to its lower nutrient availability. The successional development of BSCs drives a shift from r-to K-strategies in both habitats, with this transition being particularly pronounced in the Tengger Desert. Rare bacterial taxa harbor functional gene repertoires disproportionate to their low relative abundances and thus make outsized contributions to biogeochemical cycling; moreover, their functional potential increases progressively throughout BSC development. Functional connectivity between abundant and rare taxa was strengthened under nutrient-poor conditions. Variation in soil organic carbon content and pH emerged as primary drivers of the assembly and functional patterns. These findings indicate that nutrient-limited conditions differentially alter assembly processes and functional potential of rare and abundant taxa, and that ecological strategies shift with succession in both habitats. Our study reveals how contrasting nutrient availabilities in two arid habitats drive microbial assembly dynamics, adaptive strategies, and functional differentiation throughout BSC successional development, offering theoretical guidance for studying microbial communities and functions in arid ecosystems.
生物结皮覆盖了约40%的干旱和半干旱土地,是陆地生物地球化学循环的关键。细菌和真菌是平衡计分卡微生物群落的主要活性成分,其丰富和罕见的分类群发挥着不同的作用。在营养贫乏的腾格里沙漠和相对肥沃的黄土高原两个不同的生境中,研究了丰富和罕见的细菌和真菌类群在BSC发育过程中组装过程、适应策略和功能潜力的差异。结果表明,两种生境的细菌类群主要以随机扩散限制为主。在腾格里沙漠,瞬时稀有和条件稀有类群以同质选择为主,而由于养分有效性较低,确定性选择压力更为明显。BSCs的连续发展推动了两种栖息地从r策略到k策略的转变,这种转变在腾格里沙漠尤为明显。稀有细菌类群的功能基因库与其相对丰度不相称,因此对生物地球化学循环做出了巨大贡献;此外,它们的功能潜力在平衡计分卡的发展过程中逐渐增加。在营养贫乏的条件下,丰富和稀有类群之间的功能连通性得到加强。土壤有机碳含量和pH值的变化是其组装和功能模式的主要驱动因素。这些结果表明,营养限制条件对稀有和丰富类群的组合过程和功能潜力有不同的影响,并且两种生境的生态策略随着演替而发生变化。本研究揭示了两种干旱生态系统中养分有效性的差异如何影响生态系统演替过程中微生物的组合动态、适应策略和功能分化,为研究干旱生态系统中微生物群落和功能提供理论指导。
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引用次数: 0
Legume integration into rice cropping systems buffers topsoil functional potential against microbial diversity loss 豆科作物融入水稻种植系统可以缓冲表层土壤的功能潜力,防止微生物多样性的丧失
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-22 DOI: 10.1016/j.ejsobi.2025.103775
Bin Zhang , Zhanbo Wei , Rui Zhu , Evgenios Agathokleous , Jiacheng Zhao , Eiko E. Kuramae
Intensive cropping systems pose a growing threat to soil microbial diversity, potentially impairing essential agroecosystem functions. Introducing legume crops or implementing fallow periods into these systems are promising strategies to alleviate such negative impacts. However, how these strategies affect the resilience of soil functions to microbial diversity loss remains largely unexplored, particularly in deeper soil layers. In this study, we employed a dilution-to-extinction approach to simulate microbial diversity loss and investigated its effect on functional potential in both topsoil (0–20 cm) and subsoil (40–60 cm) under three crop rotation systems (i.e., rice-fallow, rice-wheat, rice-milk vetch). Soil functional potential was indicated by measuring the copy number of functional genes using high-throughput qPCR. Our results indicate that microbial diversity loss significantly reduced abundance of genes associated with C degradation, C fixation, N mineralization, nitrification, and denitrification in the topsoil of rice-fallow and rice-wheat systems. In contrast, the rice-milk vetch system preserved abundance of these functional genes in the topsoil following microbial diversity loss, highlighting the potential of tailored cropping strategies to counteract the adverse effect of intensive agriculture. Furthermore, while abundance of genes associated with nitrification was also reduced in subsoil by microbial diversity loss, that of genes associated with C degradation and denitrification generally increased for all cropping systems. This highlights the vulnerability of subsoil function potential to microbial diversity loss, potentially enhancing greenhouse gas emissions and contributing to positive climate feedbacks. We concluded that integrating legume crops can maintain soil functional potential in topsoil even in the face of reduced microbial diversity, which is crucial for developing sustainable agricultural practices and ensuring long-term agroecosystem resilience.
集约种植制度对土壤微生物多样性构成越来越大的威胁,可能损害基本的农业生态系统功能。在这些系统中引进豆类作物或实行休耕期是减轻这种负面影响的有希望的策略。然而,这些策略如何影响土壤功能对微生物多样性丧失的恢复能力在很大程度上仍未被探索,特别是在较深的土层中。在本研究中,我们采用稀释到灭绝的方法模拟微生物多样性的丧失,并研究了三种作物轮作制度(即水稻-休耕、水稻-小麦、水稻-豇豆)下表层土壤(0-20 cm)和底土(40-60 cm)微生物多样性对功能电位的影响。利用高通量qPCR检测功能基因拷贝数,确定土壤功能势。研究结果表明,微生物多样性的丧失显著降低了稻休耕和稻麦系统表层土壤中与碳降解、碳固定、氮矿化、硝化和反硝化相关的基因丰度。相比之下,在微生物多样性丧失后,稻-豇豆系统在表土中保留了这些功能基因的丰度,突出了定制种植策略的潜力,以抵消集约化农业的不利影响。此外,虽然土壤中与硝化作用相关的基因丰度也因微生物多样性的丧失而降低,但与碳降解和反硝化作用相关的基因丰度在所有种植制度中普遍增加。这凸显了底土功能潜力对微生物多样性丧失的脆弱性,可能会增加温室气体排放并有助于气候的正反馈。我们得出结论,即使面对微生物多样性的减少,豆类作物也可以保持表层土壤的功能潜力,这对于发展可持续农业实践和确保农业生态系统的长期恢复能力至关重要。
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引用次数: 0
Strip-intercropping of eight crop species shows limited within-field variation of soil bacterial communities 8种作物带状间作的土壤细菌群落在田间变化有限
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-31 DOI: 10.1016/j.ejsobi.2025.103782
Joliese Teunissen , Anne Kupczok , Dirk F. van Apeldoorn , Stefan Geisen
The current crop system needs to become more sustainable to halt the severe environmental impacts associated with intensive monocultures. Alternative agricultural methods, like intercropping, could increase sustainability by better utilizing the biological functions of the plant-soil ecosystem, particularly through plant-associated bacteria. Soil bacteria are key players in supplying many ecosystem functions and thus contribute to plant performance. The effect of intercropping on soil bacteria is a crucial but understudied part of integrating intercropping into the global agricultural system. Here we characterized the effect of intercropping on soil bacterial communities, by comparing intra-versus interspecific crop interactions within one organic strip-intercropping field. We determined the alpha diversity and community composition of soil bacteria across 8 crop species and 16 crop combinations. We found that bacterial alpha diversity was not affected by crop species or crop combination. In contrast, bacterial community composition was influenced by crop species, with certain crops such as parsnip, potato and celeriac shaping their associated bacterial community in both intra- and interspecific crop interactions. Minute differences (<3 %) in soil moisture between crop species determined the strongest patterns observed here. Our findings highlight that crop diversification in the context of strip-intercropping does not always modulate soil bacterial communities under field conditions.
目前的作物系统需要变得更具可持续性,以停止与集约化单一栽培相关的严重环境影响。替代农业方法,如间作,可以通过更好地利用植物-土壤生态系统的生物功能,特别是通过与植物有关的细菌,提高可持续性。土壤细菌是提供许多生态系统功能的关键参与者,因此有助于植物的生产性能。间作对土壤细菌的影响是将间作纳入全球农业系统的一个关键但尚未得到充分研究的部分。通过比较同一有机带状间作农田种内与种间作物相互作用,研究了间作对土壤细菌群落的影响。测定了8种作物和16种作物组合土壤细菌的α多样性和群落组成。我们发现细菌α多样性不受作物种类和作物组合的影响。相比之下,细菌群落组成受作物种类的影响,某些作物如防风草、马铃薯和块根草在种内和种间的相互作用中形成了它们相关的细菌群落。作物种类之间土壤湿度的微小差异(3%)决定了这里观察到的最强模式。我们的研究结果强调,在带状间作的背景下,作物多样化并不总是调节田间条件下的土壤细菌群落。
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引用次数: 0
Investigation of the seasonal dynamics of grassland soil bacterivores in top- and subsoils 草地表层和底土细菌食性的季节动态研究
IF 3.3 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-11-04 DOI: 10.1016/j.ejsobi.2025.103784
Verena Groß , Mathilde Borg Dahl , Jana Täumer , Kenneth Dumack , Haitao Wang , Michael Bonkowski , Tim Urich
Bacterivorous micro- and macro-organisms are important functional guilds in the soil microbial food web, where their activities influence the community composition. Few studies to date have holistically considered the spatial and seasonal dynamics of such bacterivores in temperate grassland soils; studies of subsoil microbial food webs are particularly scarce. This represents a potential knowledge gap, as environmental conditions (e.g. season and soil depth) may affect prokaryotic and eukaryotic bacterivores differentially. Using a quantitative metatranscriptomic approach, we studied the abundance of SSU rRNA transcripts of bacterivorous bacteria, protists, and nematodes in two German grassland sites from top- and subsoils across seasons. The combined transcript abundance of all bacterivores was significantly reduced with depth. A reduction in the transcript predator-prey ratio was seen for bacterivorous protists, nematodes, and Bdellovibrionota. In contrast, facultative bacterivorous Myxococcota showed a consistently high transcript predator-prey ratio at both depths, suggesting that they dominate the bacterivore functional guild in subsoils. The transcript abundance of all bacterivores and their potential bacterial prey exhibited similar seasonal patterns at both depths. The predator-prey ratio showed bacterivore-specific seasonal and depth-dependent variations. Although this methodology has limitations, as transcript abundance does not directly reflect organism's abundance — our findings suggest a notable role for predatory bacteria as potential main consumers of bacterial biomass in subsoils. In general, increasing soil depth appears to influence the structure of the bacterivorous community, potentially reflected in a shift in the ratio of eukaryotic predators to bacterial prey.
嗜菌微生物和嗜菌微生物是土壤微生物食物网中重要的功能行会,它们的活动影响着土壤微生物的群落组成。迄今为止,很少有研究从整体上考虑温带草原土壤中这些细菌捕食者的空间和季节动态;对地下微生物食物网的研究尤其稀少。这代表了潜在的知识差距,因为环境条件(例如季节和土壤深度)可能对原核生物和真核生物的细菌捕食者产生不同的影响。利用定量亚转录组学方法,研究了德国两处草地不同季节表层和底土中嗜菌细菌、原生生物和线虫的SSU rRNA转录物的丰度。所有细菌捕食者的转录物丰度随深度的增加而显著降低。在嗜菌原生生物、线虫和蛭弧菌中,转录物的捕食者-猎物比率降低。与此相反,兼性菌食性粘球菌在两个深度均表现出较高的转录物捕食比,表明它们在底土中主导着菌食性功能。所有细菌捕食者及其潜在细菌猎物的转录本丰度在两个深度都表现出相似的季节性模式。捕食者-猎物比例表现出细菌特异性的季节性和深度依赖性变化。尽管这种方法存在局限性,因为转录丰度并不能直接反映生物体的丰度,但我们的研究结果表明,掠食性细菌作为地下细菌生物量的潜在主要消费者具有显著作用。总的来说,土壤深度的增加似乎会影响嗜菌群落的结构,这可能反映在真核捕食者与细菌捕食者比例的变化上。
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引用次数: 0
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European Journal of Soil Biology
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