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Regulation of soil microorganisms and phosphorus cycling genes on soil phosphorus availability in desert steppe under warming and phosphorus input 增温和磷输入下荒漠草原土壤微生物和磷循环基因对土壤磷有效性的调控
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-04-23 DOI: 10.1016/j.ejsobi.2025.103728
Lingxia Feng , Bing Cao
Climate warming can directly or indirectly influence soil phosphorus (P) availability. Soil microorganisms are essential driving forces of P cycling. However, how the soil microbes and P cycling genes respond to variations in soil P availability on climate warming in the P-limited desert steppe is unclear. In this study, we conducted a field experiment using two temperature levels (control, warming) and three P fertilizer addition rates (0, 5, 10 g P m−2·yr−1) in the desert steppe. Microbiological and metagenomic analyses were used to explore the shifts in the relative abundance and compositions of soil microbial and P cycling genes in response to warming and P inputs. The results demonstrated that warming decreased soil labile P (7.04 %) by reducing the percentages of resin-P, NaHCO3-Pi, and HCl-Pi in inorganic P (Pi). P inputs significantly increased soil TP, MBP, Pi, and inorganic P fractions contents, and further enhanced soil labile P (1.27–3.55 times), moderately labile P (7.04–17.59 %), and stable P (4.23-10.47 %). The interaction of warming and P addition increased NaHCO3-Pi, the percentages of NaHCO3-Pi in Pi, and improved soil labile P (1.68–2.05 times) and stable P (5.38–10.38 %). Soil P availability was mainly regulated by TP and MBP, which were positively correlated with the organic P mineralization gene (phnW). Our findings indicated that soil bacteria and fungi did not alter in response to changes in P availability under warming and P input. The phnW gene played an essential role in regulating soil P availability in the desert steppe.
气候变暖会直接或间接影响土壤中磷(P)的供应。土壤微生物是磷循环的重要驱动力。然而,在磷有限的荒漠草原上,土壤微生物和磷循环基因如何应对气候变暖带来的土壤磷供应量变化尚不清楚。在这项研究中,我们在荒漠大草原上进行了一项田间试验,采用了两种温度水平(对照、变暖)和三种钾肥添加率(0、5、10 克 P m-2-yr-1)。通过微生物学和元基因组分析,探讨了土壤微生物和钾循环基因的相对丰度和组成随气候变暖和钾输入而发生的变化。结果表明,气候变暖降低了无机磷(Pi)中树脂-P、NaHCO3-Pi 和 HCl-Pi 的比例,从而减少了土壤中的可溶性磷(7.04%)。钾的输入明显增加了土壤中 TP、MBP、Pi 和无机钾组分的含量,并进一步提高了土壤中的可溶性钾(1.27-3.55 倍)、中度可溶性钾(7.04-17.59 %)和稳定钾(4.23-10.47 %)。增温和添加磷的交互作用增加了 NaHCO3-Pi、NaHCO3-Pi 在 Pi 中的百分比,并改善了土壤的可溶性磷(1.68-2.05 倍)和稳定磷(5.38-10.38 %)。土壤钾的可利用性主要受 TP 和 MBP 的调节,而 TP 和 MBP 与有机钾矿化基因(phnW)呈正相关。我们的研究结果表明,土壤细菌和真菌并没有随着气候变暖和磷输入量的变化而改变。phnW基因在调节荒漠草原土壤P供应量方面发挥了重要作用。
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引用次数: 0
Soil potentially toxic elements promote carbon metabolism in alpine meadows on the Qinghai-Xizang Plateau 青藏高原高寒草甸土壤潜在有毒元素促进碳代谢
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-04-15 DOI: 10.1016/j.ejsobi.2025.103727
Sichen Pan , Caiyun Luo , Xin Chen , Dongdong Chen , Qi Li , Fuquan He , Yukun Zhang , Li Zhang , Liang Zhao
Potentially toxic elements (PTEs) of soil are crucial for sustaining the equilibrium of grassland "vegetation-soil-microorganism" systems and influencing terrestrial biogeochemical cycles. This study investigated how PTEs influence microbial community structure and carbon metabolism by comparing soil microbial differences under fencing enclosure (FE), winter grazing (WG), and artificial unicast oat (AU) management practices. This was done in alpine meadows using metagenomic sequencing techniques. The results indicated that management measures significantly changed the distribution of the Cr, Hg, and As, with Cr and As being the highest in AU and Hg being the highest in FE. In the purine metabolic pathway, Hg had a significant positive effect on soil microbial biomass carbon (SMBC) metabolism, which was catabolized by the prokaryote Chloroflexi and the fungal organism Chytridiomycota during guanosine triphosphate (GTP) catabolism and xanthosine monophosphate (XMP) synthesis to promote soil SMBC cycling. Cr had a significant negative effect on soil organic carbon (SOC) and SMBC metabolism during the synthesis of xanthonsine, urate, 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate and CO2. Additionally, the enrichment and decomposition of Cr by the prokaryotic organisms Proteobacteria and Verrucomicrobia, inhibited SMBC and SOC transformation and affected soil CO2 emissions. Further, by comparing resistance genes, it was found that alpine meadows were more resistant to Hg and Cr and that fungal organisms were more tolerant to Cr than prokaryotes. Overall, Cr and Hg interact with microorganisms to influence SOC and SMBC metabolic processes and have a positive effect on carbon sequestration in alpine meadows.
土壤潜在有毒元素对维持草地“植被-土壤-微生物”系统平衡和影响陆地生物地球化学循环至关重要。本研究通过比较围栏(FE)、冬季放牧(WG)和人工单播燕麦(AU)管理方式下土壤微生物的差异,探讨了pte对微生物群落结构和碳代谢的影响。这是在高山草甸中使用宏基因组测序技术完成的。结果表明,管理措施显著改变了Cr、Hg和As的分布,其中Cr和As在AU中最高,Hg在FE中最高。在嘌呤代谢途径中,Hg对土壤微生物生物量碳(SMBC)代谢有显著的正向影响,在三磷酸鸟苷(GTP)分解代谢和单磷酸黄嘌呤(XMP)合成过程中,汞被原核生物Chloroflexi和真菌生物Chytridiomycota分解代谢,促进土壤SMBC循环。在黄嘌呤、尿酸、5-羟基-2-氧-4-脲基-2,5-二氢- 1h -咪唑-5-羧酸盐和CO2的合成过程中,Cr对土壤有机碳(SOC)和SMBC代谢有显著的负影响。此外,原核生物Proteobacteria和Verrucomicrobia对Cr的富集和分解抑制了SMBC和SOC的转化,并影响了土壤CO2的排放。此外,通过对抗性基因的比较,发现高寒草甸对汞和铬的抗性更强,真菌生物对铬的耐受性优于原核生物。总体而言,Cr和Hg与微生物相互作用,影响高寒草甸土壤有机碳和SMBC代谢过程,对碳固存具有积极作用。
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引用次数: 0
Changes in microbial communities in biological soil crusts along an altitudinal gradient in the northeastern Qinghai-Tibet plateau 青藏高原东北部生物土壤结皮微生物群落沿海拔梯度的变化
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-04-14 DOI: 10.1016/j.ejsobi.2025.103726
Yuan Zhang , Benli Liu , Jianjun Qu
Biological soil crusts (BSCs) cover approximately 12 % of the earth's terrestrial surface and play vital ecological roles in various dry habitats. However, most research on BSCs has focused on deserts in arid and semi-arid regions, with limited studies on BSCs under sensitive, fragile, and cold conditions, such as those found in the Qinghai-Tibet Plateau. Notably, investigations into the complete successional stages of BSCs in these regions are exceedingly rare. In this study, we examined four successional stages of BSCs across five sites at elevations ranging from 2862 to 4274 m in the northeastern Qinghai-Tibet Plateau. High-throughput sequencing was used to analyze the bacterial, fungal, and archaeal communities in the soil, and their diversity, interactions, spatial distribution patterns, and influencing factors were investigated. Our results indicated that in alpine degraded grassland ecosystems, the altitude gradient played a significant role in shaping the distribution patterns of microbial communities during the succession of BSCs. At lower elevations (2862–3405 m), the successional patterns of α-diversity for the three microbial communities were relatively consistent. In contrast, α-diversity patterns at higher altitudes showed greater variability. Differences in bacterial composition between high-altitude areas (3760 m and 4274 m) increased with the development and succession of BSCs, while the differences between low-altitude areas (2862 m and 3405 m) showed opposite trend. The differences in fungal composition across all altitude regions gradually decreased with the succession of BSCs. Additionally, bacterial and fungal composition demonstrated more distinct altitudinal zonation characteristics compared to archaea. Within the bacterial, fungal, or archaeal communities, mutualistic interactions were stronger than competitive interactions, facilitating adaptation to the harsh high-altitude environment. Furthermore, mean annual precipitation, mean annual temperature, pH, and sand content collectively influenced the microbial community distribution patterns in alpine degraded grassland ecosystems. Our research provides scientific references for the distribution and resource protection of BSCs in the Qinghai-Tibet plateau.
生物土壤结皮(BSCs)约占地球陆地表面的12%,在各种干旱生境中起着重要的生态作用。然而,对BSCs的研究大多集中在干旱和半干旱地区的沙漠,对青藏高原等敏感、脆弱和寒冷条件下的BSCs的研究很少。值得注意的是,对这些地区BSCs完整演替阶段的研究极为罕见。本文研究了青藏高原东北部海拔2862 ~ 4274 m的5个样地BSCs的4个演替阶段。利用高通量测序技术对土壤中细菌、真菌和古细菌群落进行了分析,探讨了它们的多样性、相互作用、空间分布格局及其影响因素。研究结果表明,在高寒退化草地生态系统中,海拔梯度对BSCs演替过程中微生物群落的分布格局具有重要影响。在较低海拔(2862 ~ 3405 m), 3个微生物群落α-多样性的演替格局较为一致。海拔越高,α-多样性变化越大。高海拔地区(3760 m和4274 m)细菌组成差异随着BSCs的发育演替而增大,低海拔地区(2862 m和3405 m)细菌组成差异呈相反趋势。随着BSCs的演替,不同海拔地区真菌组成的差异逐渐减小。此外,与古细菌相比,细菌和真菌组成表现出更明显的高度分带特征。在细菌、真菌或古细菌群落中,互惠相互作用强于竞争相互作用,促进了对恶劣高海拔环境的适应。年平均降水量、年平均气温、pH和含沙量共同影响高寒退化草地生态系统微生物群落的分布格局。本研究为青藏高原BSCs的分布及资源保护提供了科学参考。
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引用次数: 0
The hidden shift: The role of exotic plantations in modulating soil arthropod communities in an arid island 隐藏的转变:外来人工林在干旱岛屿调节土壤节肢动物群落中的作用
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-04-08 DOI: 10.1016/j.ejsobi.2025.103724
Adolfo Perdomo-González , Raquel Pérez-Reverón , Marta Goberna , Heriberto López , Paula Arribas , J. Alfredo Reyes-Betancort , Carmelo Andújar , Francisco J. Díaz-Peña
Reforestation with exotic species has often been used in arid and semiarid areas to restore degraded ecosystems. However, the effects of these plantations on soil biodiversity are still under debate. In the present study, we aimed to evaluate the long-term impacts (>60 years) of exotic plantations with Acacia cyclops and Pinus halepensis on soil biodiversity in an insular arid ecosystem of high ecological value. To do so, we study soil quality and soil arthropod communities in patches of vegetation under uniform edaphoclimatic conditions. Soil quality assessment was carried out by developing an ad-hoc Soil Quality Index (SQI) across seven sites, including two plantations (Pinus or Acacia), two degraded areas with a low cover of native species, and three sites with a high cover of native species. Whole organism community DNA (wocDNA) metabarcoding and barcoding were used to analyse key soil arthropod groups (Coleoptera, Acari and Collembola) recognized as habitat quality and biodiversity indicators. Our findings show that exotic plantations improved soil quality compared to degraded sites, with a considerable increase in the organic carbon pool, macronutrients and microbiological activity (SQI = 0.53 ± 0.12 vs. 0.29 ± 0.06). This improvement did not reach the values recorded in soils with a high cover of preserved native flora (SQI = 0.65 ± 0.12), with some exceptions. Richness of mesofauna and Coleoptera was lower in degraded areas (4.4 ± 1.6 and 0.4 ± 0.7, respectively) followed by exotic plantations (9.5 ± 2.6 and 1.2 ± 0.9) and permanent native vegetation (14.1 ± 5.5 and 2.2 ± 1.8). Soil quality significantly explained up to 52 % and 17 % of the variance in the richness of mesofauna and Coleoptera, respectively. While exotic plantations appear to prevent further land degradation in terms of soil quality, multivariate analysis shows that the structure of soil arthropod communities, particularly in Pinus plantations and to a lesser extent in Acacia plantations, differs significantly from that of soils in ecosystems with remnant native flora. These results highlight the need for a careful balance between biodiversity conservation and soil health management, especially in areas susceptible to desertification.
在干旱和半干旱地区,利用外来物种造林是恢复退化生态系统的常用方法。然而,这些人工林对土壤生物多样性的影响仍存在争议。在本研究中,我们旨在评估在一个具有高生态价值的孤岛干旱生态系统中,种植刺槐和halepensis的外来人工林对土壤生物多样性的长期影响(>60)。为此,我们研究了均匀气候条件下植被斑块的土壤质量和土壤节肢动物群落。通过建立特别土壤质量指数(SQI)对7个样地进行土壤质量评价,包括2个人工林(松木或金合欢)、2个原生物种低覆盖的退化区和3个原生物种高覆盖的样地。采用全生物群落DNA (wocDNA)元条形码法和条形码法对土壤节肢动物主要类群(鞘翅目、蜱螨和线虫)进行生境质量和生物多样性指标分析。结果表明,与退化地相比,外来人工林改善了土壤质量,有机碳库、常量营养素和微生物活性显著增加(SQI = 0.53±0.12比0.29±0.06)。除了一些例外情况,这种改善没有达到高原生植物覆盖土壤的SQI值(0.65±0.12)。退化区中低等动物和鞘翅目动物的丰富度依次为4.4±1.6和0.4±0.7,其次为外来人工林(9.5±2.6和1.2±0.9)和永久原生植被(14.1±5.5和2.2±1.8)。土壤质量对中、鞘翅目动物丰富度差异的解释分别高达52%和17%。虽然从土壤质量的角度来看,外来人工林似乎可以防止土地进一步退化,但多变量分析表明,土壤节肢动物群落的结构,特别是在松林和金合欢人工林(在较小程度上),与有残余本地植物群的生态系统的土壤结构存在显著差异。这些结果强调需要在生物多样性保护和土壤健康管理之间取得谨慎的平衡,特别是在易受荒漠化影响的地区。
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引用次数: 0
The light shifts in ammonia nitrogen affected soil microbial communities with their related dissolved organic matter in the arid region 干旱区氨氮的光移影响了土壤微生物群落及其相关的溶解有机质
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-03-28 DOI: 10.1016/j.ejsobi.2025.103725
XinYue Yan , Yang Li , TianQi Qin , Ying Gan , Na Li
Arid and semi-arid climates are vital components of ecosystem, however, the mechanisms by which microorganisms respond to soil dissolved organic matter (DOM) in these regions under the constraint of ammonium nitrogen remain unknown. In this study, we investigated the differences in microbial diversity, composition, abundance, and DOM composition in soils with varying ammonia-nitrogen (NH4+-N) concentrations in arid and semi-arid regions. We also explored the connectivity between the co-occurrence networks of microorganisms and DOM. In high NH4+-N environments, the phyla of soil microorganisms that showed an increase included Anabaena and Thick-walled Bacteria. Moreover, the abundance of microorganisms such as Reyranella, Actinophyfocala, and Arhrobacter also increased. The main metabolic modes of these microorganisms were lysine biosynthesis and D-amino acid metabolism. Metabolites that exhibited elevated levels along with the increase in NH4+-N content included those related to chlorocyclohexane and chlorobenzene degradation, as well as geraniol degradation. NH4+-N was identified as the most significant environmental factor influencing the relationship between microorganisms and DOM. In high-ammonia environments, the number of links, average clustering coefficient, density, and connectivity of the microorganisms and DOM co-occurrence network were significantly higher. This indicates that the co-occurrence network was more complex and stable. In contrast, low NH4+-N environments restricted microbial metabolic processes and altered the DOM composition, leading to a further limitation of microbial activity. This study elucidated the response mechanism of soil microorganisms to DOM under the limitation of NH4+-N in arid and semi-arid regions and emphasized the crucial role of soil NH4+-N concentration in the soil biological cycle. It offers a reference for monitoring soil quality, preventing soil degradation, and maintaining ecological environment and food security.
干旱和半干旱气候是生态系统的重要组成部分,但这些地区微生物在铵态氮约束下对土壤溶解有机质(DOM)的响应机制尚不清楚。本文研究了干旱和半干旱区不同氨氮(NH4+-N)浓度土壤中微生物多样性、组成、丰度和DOM组成的差异。我们还探索了微生物共现网络与DOM之间的连通性。在高NH4+-N环境下,土壤微生物类群增加的主要有水蓝藻和厚壁细菌。此外,Reyranella、放线藻、Arhrobacter等微生物的丰度也有所增加。这些微生物的主要代谢方式是赖氨酸生物合成和d -氨基酸代谢。随着NH4+-N含量的增加,代谢物水平升高,包括与氯环己烷和氯苯降解相关的代谢物,以及香叶醇降解相关的代谢物。NH4+-N是影响微生物与DOM关系最显著的环境因子。在高氨环境下,微生物和DOM共现网络的链接数、平均聚类系数、密度和连通性显著更高。这说明共现网络更加复杂和稳定。相反,低NH4+-N环境限制了微生物的代谢过程,改变了DOM的组成,进一步限制了微生物的活性。本研究阐明了干旱半干旱区土壤微生物在NH4+-N限制下对DOM的响应机制,强调了土壤NH4+-N浓度在土壤生物循环中的关键作用。为监测土壤质量,防止土壤退化,维护生态环境和粮食安全提供参考。
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引用次数: 0
Soil bacterial communities benefit from long-term cover crop mixtures 土壤细菌群落受益于长期混合覆盖作物
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-03-01 DOI: 10.1016/j.ejsobi.2025.103714
Biyensa Gurmessa , Ranjith P. Udawatta , R. Tharindu Rambadagalla , Timothy Reinbott
Understanding the long-term impacts of cover cropping on soil health indicators is vital for developing sustainable farming practices. The aim of the current study was to investigate the impacts of long-term mixed cover crops practice in a no-till system on soil bacterial community abundance and diversity using 16S rRNA sequencing. We compared three cover crop practices againist a no-cover crop control (NCC): cereal rye only (Rye), a mixture of cereal rye and hairy vetch (RyeHV), and a mixture of cereal rye, hairy vetch, crimson clover, and Australian winter pea (Mixed). These treatments were arranged in a completely randomized block design with four replications. The abundance of soil bacteria was lower in the Rye treatment compared to the Mixed and RyeHV treatments, possibly due to the uniform supply of resources (exudates) and the limited root structure, rather than due to the increased soil bulk density or reduced organic carbon. This reduction was observed in the total operational taxonomic units and the dominant taxa groups, including Actinobacteria, Proteobacteria, Firmicutes, and Acidobacteria. Non-metric Multidimensional Scaling analysis, using Bray-Curtis dissimilarity, revealed distinct bacterial community structure between the Rye and the rest of treatments, but with a potential overlap of that of NCC with all the cover crop treatments. In conclusion, our study revealed that unlike mixed species cover crops, a single species cover crops may compete for resources with soil bacterial community, leading to a reduced abundance of soil bacteria. Moreover, possible positive impact of cover cropping on soil physicochemical properties may not always have relationships with soil bacterial alpha diversity. Future research should explore attributes of mixed cover crops that may be crucial in driving microbial community structure.
了解覆盖种植对土壤健康指标的长期影响,对于发展可持续农业做法至关重要。本研究旨在利用16S rRNA测序技术研究免耕制度下长期混作覆盖作物对土壤细菌群落丰度和多样性的影响。我们将三种覆盖作物与无覆盖作物控制(NCC)进行了比较:仅谷物黑麦(rye),谷物黑麦和毛豌豆的混合物(RyeHV),谷物黑麦,毛豌豆,深红色三叶草和澳大利亚冬豆的混合物(Mixed)。这些处理采用完全随机区组设计,每组4个重复。黑麦处理土壤细菌丰度低于混合处理和黑麦处理,可能是由于资源(渗出物)供应均匀和根系结构有限,而不是由于土壤容重增加或有机碳减少。在总操作分类单位和优势分类群(包括放线菌门、变形菌门、厚壁菌门和酸杆菌门)中观察到这种减少。利用Bray-Curtis差异进行非度量多维尺度分析,发现黑麦与其他处理之间存在明显的细菌群落结构差异,但黑麦与所有覆盖作物处理之间存在潜在的重叠。综上所述,与混合种覆盖作物不同,单一种覆盖作物可能会与土壤细菌群落争夺资源,导致土壤细菌丰度降低。此外,覆盖种植对土壤理化性质可能产生的积极影响并不总是与土壤细菌α多样性有关。未来的研究应探索混合覆盖作物的属性,这些属性可能对驱动微生物群落结构至关重要。
{"title":"Soil bacterial communities benefit from long-term cover crop mixtures","authors":"Biyensa Gurmessa ,&nbsp;Ranjith P. Udawatta ,&nbsp;R. Tharindu Rambadagalla ,&nbsp;Timothy Reinbott","doi":"10.1016/j.ejsobi.2025.103714","DOIUrl":"10.1016/j.ejsobi.2025.103714","url":null,"abstract":"<div><div>Understanding the long-term impacts of cover cropping on soil health indicators is vital for developing sustainable farming practices. The aim of the current study was to investigate the impacts of long-term mixed cover crops practice in a no-till system on soil bacterial community abundance and diversity using 16S rRNA sequencing. We compared three cover crop practices againist a no-cover crop control (NCC): cereal rye only (Rye), a mixture of cereal rye and hairy vetch (RyeHV), and a mixture of cereal rye, hairy vetch, crimson clover, and Australian winter pea (Mixed). These treatments were arranged in a completely randomized block design with four replications. The abundance of soil bacteria was lower in the Rye treatment compared to the Mixed and RyeHV treatments, possibly due to the uniform supply of resources (exudates) and the limited root structure, rather than due to the increased soil bulk density or reduced organic carbon. This reduction was observed in the total operational taxonomic units and the dominant taxa groups, including Actinobacteria, Proteobacteria, Firmicutes, and Acidobacteria. Non-metric Multidimensional Scaling analysis, using Bray-Curtis dissimilarity, revealed distinct bacterial community structure between the Rye and the rest of treatments, but with a potential overlap of that of NCC with all the cover crop treatments. In conclusion, our study revealed that unlike mixed species cover crops, a single species cover crops may compete for resources with soil bacterial community, leading to a reduced abundance of soil bacteria. Moreover, possible positive impact of cover cropping on soil physicochemical properties may not always have relationships with soil bacterial alpha diversity. Future research should explore attributes of mixed cover crops that may be crucial in driving microbial community structure.</div></div>","PeriodicalId":12057,"journal":{"name":"European Journal of Soil Biology","volume":"124 ","pages":"Article 103714"},"PeriodicalIF":3.7,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143549154","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Carbon and energy utilization in microbial cell extracts from soil 土壤微生物细胞提取物的碳和能量利用
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-01-30 DOI: 10.1016/j.ejsobi.2025.103713
Milan Varsadiya , Fatemeh Dehghani , Shiyue Yang , Evgenia Blagodatskaya , Thomas Maskow , Dimitri V. Meier , Tillmann Lueders
Microbial carbon use efficiency (CUE), the ratio of carbon retained in biomass vs. total C uptake, is central to our understanding of organic C turnover in soil. A precise quantification of CUE in soils can be challenging, given the considerable analytical uncertainties of organic and inorganic C backgrounds. At the same time, CUE measured for model pure cultures will be distinct from a diverse microbiota in soil. As a proxy between laboratory cultures and complex soil microbiomes, we tested soil-free microbial cell extracts (SFCE) to unravel patterns of C utilization in soil-derived microbiomes of reduced complexity. For this, we have revisited and optimized established protocols to extract microbial cells from agricultural soil via Nycodenz density centrifugation. The total extracted cells were quantified, accounting for up to ∼3.5 × 107 cells g−1 soil and representing ∼12.5 % of the original soil microbiome. The diversity of microbes in SFCE, while consistently reduced compared to soil, still retained a surprisingly high proportion of the original soil microbiome, with ASVs recovered from 21 phyla. We then inferred CUE from calorespirometric measurements (metabolic heat flow and CO2 production) to compare values between SFCE and intact soil. Both were amended with substrates (glucose, glutamine, and glycerol) of different C and N content, and C oxidation state (NOSC). SFCE showed CUE values principally comparable to that of the intact soil, but with substrate-specific distinctions. Amplicon sequencing and qPCR-based quantification showed typical soil taxa like Pseudomonas, Pseudarthrobacter, and Bacteroidota to respond to substrate addition in soil and SFCE. Our results support the use of SFCE as a valuable and complementary approach toward elucidating microbial CUE and growth patterns for complex soil microbiota.
微生物碳利用效率(CUE),即生物量中保留的碳与总碳吸收的比率,是我们理解土壤有机碳周转的核心。考虑到有机和无机碳背景的分析不确定性,土壤中CUE的精确定量可能具有挑战性。同时,为模型纯培养物测量的CUE将与土壤中的多种微生物群不同。作为实验室培养和复杂土壤微生物组之间的代理,我们测试了无土壤微生物细胞提取物(SFCE),以揭示复杂性降低的土壤来源微生物组对C的利用模式。为此,我们重新审视并优化了通过Nycodenz密度离心从农业土壤中提取微生物细胞的既定方案。对提取的总细胞进行了定量,占到~ 3.5 × 107个细胞g−1土壤,占原始土壤微生物组的~ 12.5%。与土壤相比,SFCE中微生物的多样性不断减少,但仍然保留了原始土壤微生物组的高比例,其中有21个门恢复了asv。然后,我们从热肺测量(代谢热流和二氧化碳产生)中推断出CUE,以比较SFCE和完整土壤之间的值。两者都用不同C、N含量和C氧化态(NOSC)的底物(葡萄糖、谷氨酰胺和甘油)进行修饰。SFCE的CUE值与完整土壤基本相当,但存在基质特异性差异。扩增子测序和基于qpcr的定量分析显示,假单胞菌、假节杆菌和拟杆菌属等典型土壤分类群对土壤基质添加和SFCE有响应。我们的研究结果支持SFCE作为一种有价值的补充方法来阐明复杂土壤微生物群的微生物CUE和生长模式。
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引用次数: 0
Earthworm burrows affect vertical distribution of springtails in soil 蚯蚓的地穴影响土壤中跳尾的垂直分布
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-01-30 DOI: 10.1016/j.ejsobi.2025.103710
A.F. Krediet , B.S. Mönnich , J. Ellers , M.P. Berg
Extreme climatic events, such as prolonged dry spells, are causing more intense soil droughts, which can be a major threat to soil life. Soil animals in general are rather sensitive to strong fluctuations in soil moisture content but may be able to escape from drought by moving deeper into the soil. Bioturbation, for example by burrowing activity of earthworms, may facilitate such vertical movement and hence moderate the consequences of drought for soil animals. Here, we investigated if earthworm burrows enable soil-dwelling Collembola to move deeper into the soil and escape drought conditions. We also tested if drought affects bioturbation activity of earthworms, and measured evaporation from soil under drought conditions. Using transparent 2D-terraria, we analyzed the effect of four burrow treatments (i.e. burrows from an anecic earthworm species, burrows from an endogeic earthworm species, artificially made burrows, no burrows), each subjected to either drought or normal soil moisture conditions. We added 40 euedaphic springtails (Folsomia candida) per terrarium. After two weeks, we recorded survival of the springtails and their vertical localization in the soil. We used computer vision to estimate the cover and average depth of bioturbated area from photographs of the 2D-terraria. We found that the presence of Aporrectodea caliginosa (endogeic) increased the survival of springtails. Under normal moisture conditions, springtails were found deeper in the soil in the presence of A. longa (anecic). Aporrectodea longa strongly increased evaporation under normal soil moisture conditions. Our experiment showed that earthworms may moderate the impact of drought on euedaphic springtails, which opens up the hypothesis that other soil fauna may benefit as well from earthworm burrowing activity.
极端气候事件,如长期干旱,正在造成更严重的土壤干旱,这可能对土壤生命构成重大威胁。一般来说,土壤动物对土壤含水量的剧烈波动相当敏感,但它们可能通过向土壤深处移动来躲避干旱。生物扰动,例如蚯蚓的挖洞活动,可能促进这种垂直运动,从而减轻干旱对土壤动物的影响。在这里,我们研究了蚯蚓的洞穴是否能使居住在土壤中的弹线虫向土壤深处移动并逃避干旱条件。我们还测试了干旱是否影响蚯蚓的生物扰动活动,并测量了干旱条件下土壤的蒸发。利用透明的2d terraria,我们分析了四种洞穴处理的效果(即来自奇源蚯蚓的洞穴,来自内源蚯蚓的洞穴,人工制造的洞穴,没有洞穴),每种洞穴都受到干旱或正常土壤湿度条件的影响。我们在每个玻璃容器中添加了40只原生弹尾(Folsomia candida)。两周后,我们记录了弹尾虫的存活情况和它们在土壤中的垂直位置。我们使用计算机视觉从二维terraria的照片中估计生物扰动区域的覆盖范围和平均深度。我们发现,Aporrectodea caliginosa(内源性)的存在增加了弹尾虫的存活率。在正常的湿度条件下,弹尾虫被发现存在于土壤深处的A. longa (anecic)。在正常土壤水分条件下,长尾连翘显著增加了蒸发量。我们的实验表明,蚯蚓可能会缓和干旱对原生跳尾的影响,这开启了其他土壤动物也可能从蚯蚓的挖洞活动中受益的假设。
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引用次数: 0
Effects of long-term sugarcane-soybean intercropping coupled with varying levels of nitrogen input on soil legacies: A field experimental study 长期甘蔗-大豆间作配施不同氮素水平对土壤遗传的影响:田间试验研究
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-01-30 DOI: 10.1016/j.ejsobi.2025.103711
Shiqiang Ge , Muhammad Shoaib Rana , Zixuan Li , Yongjian Chen , Zixuan Wang , Chang Shen , Tantan Zhang , Yinghua Shu , Jianwu Wang
Long-term agricultural management practices alter the biochemical properties of soil, leading to the formation of distinct soil legacies. Sugarcane-soybean intercropping is recognized as a sustainable and stable agricultural practice, while the application of nitrogen (N) fertilizer is essential for enhancing crop yields. However, research on the effects of long-term sugarcane-soybean intercropping coupled with varying N levels on soil legacies remains limited. Therefore, we selected four treatments in a long-term field experiment: sugarcane monoculture with reduced N application (MSN1), sugarcane monoculture with conventional N application (MSN2), sugarcane-soybean intercropping with reduced N application (SB2N1), and sugarcane-soybean intercropping with conventional N application (SB2N2). The study aims to investigate the effects of soybean intercropping coupled with varying N application levels on soil abiotic (chemical properties) and biotic (microbial communities) legacies. The results showed that under conventional N application (525 kg ha−1), intercropping, compared to monoculture, significantly increased the contents of total potassium (TK), nitrate nitrogen (NO3), available zinc (AZn) and the network complexity of the arbuscular mycorrhizal fungi (AMF) community. Under intercropping conditions, reduced N application (300 kg ha⁻1), compared to conventional N application, significantly increased the content of exchangeable calcium (ECa), pH, as well as the alpha diversity and network complexity of the bacterial community. Under monocropping conditions, conventional N application significantly increased the complexity of the bacterial community network. Stochastic processes dominated the assembly of bacterial and AMF communities, but under the same cropping pattern, deterministic processes in fungal communities increased with N application. Soil pH, N nutrients, and trace metal elements are key factors affecting the diversity and composition of soil microbial communities. These findings highlight the significant impact of intercropped soybean on soil legacies, whereas the N level of application plays a key role in regulating the effectiveness of biotic and abiotic soil legacies. This study provides valuable insights into managing soil legacies and provides a theoretical basis for the development of sustainable agriculture.
长期的农业管理实践改变了土壤的生化特性,从而形成了独特的土壤遗产。甘蔗-大豆间作是公认的可持续稳定的农业生产方式,而氮肥的施用是提高作物产量的关键。然而,长期甘蔗-大豆间作配施不同氮水平对土壤遗传影响的研究仍然有限。因此,本研究选择甘蔗单作减氮(MSN1)、甘蔗单作常规施氮(MSN2)、甘蔗-大豆间作减氮(SB2N1)和甘蔗-大豆间作常规施氮(SB2N2) 4个处理进行长期田间试验。本研究旨在探讨大豆间作配施不同施氮量对土壤非生物(化学性质)和生物(微生物群落)遗传的影响。结果表明,在常规施氮(525 kg ha−1)条件下,套作与单作相比,显著提高了丛枝菌根真菌(AMF)群落的总钾(TK)、硝态氮(NO3−)、有效锌(AZn)含量和网络复杂性。间作条件下,与常规施氮相比,减少施氮量(300 kg ha - 1)显著提高了土壤中交换性钙(ECa)含量、pH值以及细菌群落的α多样性和网络复杂性。在单作条件下,常规施氮显著增加了细菌群落网络的复杂性。细菌和AMF群落的聚集以随机过程为主,但在相同种植模式下,真菌群落的聚集随施氮量的增加而增加。土壤pH、N养分和微量金属元素是影响土壤微生物群落多样性和组成的关键因素。这些结果表明间作大豆对土壤遗传的影响显著,而施氮水平在调节生物和非生物土壤遗传的有效性中起关键作用。该研究为土壤遗产管理提供了有价值的见解,并为可持续农业的发展提供了理论依据。
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引用次数: 0
Soil phosphorus dynamics and its correlation with ectomycorrhizal fungi following forest conversion in subtropical conifer (Picea asperata) forests 亚热带针叶林森林转换后土壤磷动态及其与外生菌根真菌的关系
IF 3.7 2区 农林科学 Q1 ECOLOGY Pub Date : 2025-01-27 DOI: 10.1016/j.ejsobi.2025.103712
Lixia Wang , Shiyu Song , Huichao Li , Yang Liu , Lin Xu , Han Li , Chengming You , Sining Liu , Hongwei Xu , Bo Tan , Zhenfeng Xu , Li Zhang , Hans Lambers , Douglas Godbold
Ectomycorrhizal (ECM) fungi or their associated microbes play key roles in mobilizing phosphorus (P) from soil organic matter. Forest conversion often alters soil P availability. However, the correlation between P dynamics caused by forest conversion and changes in ECM fungi is not clear. To dress this issue, we create ECM-reduction (trenched) and ECM-intact (untrenched) conditions in the natural forest and plantation. We then measured soil microbial properties, fungal communities, and P fractions. Our results showed that the natural forest exhibited a higher proportion of inorganic phosphorus (Pi) and a lower proportion of organic phosphorus (Po) compared to the plantation, indicating that forest conversion resulted in a decrease in P mineralization. Under ECM-reduction conditions, resin-Pi contents increased in both forest types. ECM-reduction led to an increase in NaOH-Pi and a decrease in NaOH-Po in both forest types. However, ECM-reduction decreased the 1 M HCl-Pi content in the natural forest while increasing it in the plantation. Structural equation modeling revealed that in the natural forest, trenching directly affected the reads number of ECM fungi, which subsequently influenced 1 M HCl-Pi and resin-Pi contents. In the plantation, trenching impacted NaOH-Po and ECM reads number, which were associated with changes in residual-P and resin-Pi contents. These findings highlight that ECM fungi differ in their utilization of resin-Pi and their ability to mobilize primary mineral Pi (1 M HCl-Pi) and poorly-available P, depending on the soil quality of natural forests and plantations.
外生菌根真菌(ECM)及其伴生微生物在从土壤有机质中调动磷(P)中起着关键作用。森林转化经常改变土壤磷的有效性。然而,森林转换引起的磷动态与ECM真菌变化之间的相关性尚不清楚。为了解决这个问题,我们在天然林和人工林中创造了ecm减少(沟槽)和ecm完整(未沟槽)的条件。然后我们测量了土壤微生物特性、真菌群落和磷组分。结果表明,与人工林相比,天然林土壤中无机磷(Pi)含量较高,有机磷(Po)含量较低,表明森林转化导致土壤中磷矿化程度降低。在ecm减少条件下,两种林型的树脂- pi含量均增加。ecm减少导致两种林型NaOH-Pi增加,NaOH-Po减少。ecm的减少使天然林的HCl-Pi含量降低了1 M,而人工林的HCl-Pi含量则增加了1 M。结构方程模型表明,在天然林中,挖沟直接影响ECM真菌的reads数,进而影响1 M HCl-Pi和resin-Pi的含量。在人工林中,沟槽对NaOH-Po和ECM读数有影响,其变化与剩余磷和树脂pi含量的变化有关。这些发现突出表明,ECM真菌对树脂-磷的利用以及动员初级矿物磷(1 M HCl-Pi)和缺乏有效磷的能力因天然林和人工林的土壤质量而异。
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引用次数: 0
期刊
European Journal of Soil Biology
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