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Establishment and characterization of SSI cell line from Sebastes schlegelii intestine for investigating the immune response to Pathogenic Bacteria. 用于研究致病菌免疫反应的鮨肠 SSI 细胞系的建立和特征描述
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-11-01 Epub Date: 2024-10-29 DOI: 10.1016/j.fsi.2024.109993
Ting Xue, Yanmin Wang, Yiping Liu, Yuping Liu, Chao Li

As a commercially valuable fish species, Sebastes schlegelii faces threats from pathogenic bacteria like Edwardsiella piscicida during aquaculture. The global host range of E. piscicida encompasses various species, yet its pathogenic mechanism remains incompletely elucidated. Cell lines offer invaluable in vitro resources for studying the pathogen pathogenicity. Here, we established and characterized a cell line derived from the intestinal tissue of the S. schlegelii, designated as SSI. SSI has undergone continuous subculturing for over 80 passages, demonstrating robust growth in DMEM supplemented with 10%-20% FBS and 20 μM HEPES at 24°C. Karyotype analysis and 18S rRNA amplification confirm its origin. SSI exhibits high transfection efficiency for exogenous DNA, making it suitable for gene expression and intestinal function analysis. E. piscicida infects SSI cells at low densities without inducing morphological changes within 6 h of infection, suggesting the potential of SSI as an in vitro model for studying E. piscicida pathogenicity. This cell line provides a valuable tool for investigating mucosal immunity and E. piscicida pathogenic mechanisms in marine fish.

作为一种具有商业价值的鱼类物种,裸颊鲈在水产养殖过程中面临着病原菌(如鱼腥臭埃德维氏菌)的威胁。E. piscicida 的全球宿主范围包括多种物种,但其致病机制仍未完全阐明。细胞系为研究病原体的致病性提供了宝贵的体外资源。在这里,我们建立并鉴定了一种来自 S. schlegelii 肠组织的细胞系,命名为 SSI。SSI 已连续培养了 80 多个传代,在添加了 10%-20% FBS 和 20 uM HEPES 的 DMEM 溶液(24°C)中生长旺盛。核型分析和 18S rRNA 扩增证实了其来源。SSI 对外源 DNA 的转染效率很高,因此适用于基因表达和肠道功能分析。鱼腥鸥在低密度感染 SSI 细胞后 6 小时内不会引起形态学变化,这表明 SSI 有潜力成为研究鱼腥鸥致病性的体外模型。该细胞系为研究海水鱼的粘膜免疫和E. piscicida致病机制提供了宝贵的工具。
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引用次数: 0
Intracellular metabolome elucidates the time-of-day-dependent response to hydrogen peroxide in salmonid gill epithelial cells 细胞内代谢组阐明了鲑鱼鳃上皮细胞对过氧化氢的时间依赖性反应。
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-11-01 DOI: 10.1016/j.fsi.2024.109994
Carlo C. Lazado , Nora Albaladejo-Riad , Alexander Rebl
The internal timekeeping system regulates the daily cycle of physiological and behavioural changes in living organisms. This rhythmic phenomenon also influences cellular responses to reactive oxygen species, such as hydrogen peroxide (H2O2). However, the temporal interaction between H2O2 and fish mucosal cells is not well understood. This study examined the temporal variations of immunological and physiological responses to H2O2 in salmonid gill cells using the RTgill-W1 cell line. The results showed that gene expression levels varied during a 24-h cycle but did not exhibit rhythmicity. The presence of a 12-h light-dark cycle (12L:12D) signal increased gene expression levels compared to a 24-h dark cycle (0L:24D). To investigate whether the time of day affects the defences in gills, cells were exposed to H2O2 at two different times (Zeitgeber time 2, ZT2, or ZT14). Although significant expression changes were observed in genes related to stress and NF-κB signalling, only a limited time-dependent pattern of response to H2O2 was observed. The intracellular metabolome of gill cells was primarily composed of organic acid and derivatives, organoheterocyclic compounds, benzoids, organic oxygen and nitrogen compounds. Exposure to H2O2 at ZT2 led to significant changes in the metabolome compared to the control group, while no such changes were observed at ZT14. Within the control groups, the concentrations of 11 metabolites significantly varied between ZT2 and ZT14, with higher levels at ZT14. These metabolites were involved in arginine biosynthesis, amino acid metabolism, and nitrogen metabolism. In contrast, the level of 26 metabolites significantly varied between ZT2 and ZT14 in H2O2-exposed groups, with lower levels at ZT14. Comparing control and H2O2-exposed groups at ZT2, 38 metabolites were affected, primarily organic acid and derivatives and organic oxygen compounds. Functional annotation revealed that these altered metabolites were involved in 15 different pathways, with valine, leucine, and isoleucine biosynthesis being the most affected. This study reveals the presence of a time-dependent response to H2O2 in salmonid gill cells, which is reflected in the intracellular metabolome. The findings provide new insights into the temporal regulation of mucosal defences in fish.
内部计时系统调节着生物体内生理和行为变化的日周期。这种节律现象也影响着细胞对活性氧(如过氧化氢(H2O2))的反应。然而,人们对 H2O2 与鱼类粘膜细胞之间的相互作用还不甚了解。本研究利用 RTgill-W1 细胞系研究了鲑鱼鳃细胞对 H2O2 的免疫和生理反应的时间变化。结果表明,基因表达水平在 24 小时周期内变化,但不表现出节律性。与 24 小时黑暗循环(0L:24D)相比,12 小时光暗循环(12L:12D)信号的存在会增加基因表达水平。为了研究一天中的时间是否会影响鳃的防御能力,在两个不同的时间(Zeitgeber 时间 2,ZT2 或 ZT14)将细胞暴露于 H2O2。虽然观察到与应激和 NF-κB 信号有关的基因表达发生了明显变化,但只观察到对 H2O2 的有限的时间依赖性反应模式。鳃细胞内的代谢组主要由有机酸及其衍生物、有机杂环化合物、苯甲酸、有机氧和氮化合物组成。与对照组相比,在 ZT2 阶段接触 H2O2 会导致代谢组发生显著变化,而在 ZT14 阶段则未观察到此类变化。在对照组中,11种代谢物的浓度在ZT2和ZT14之间有显著变化,ZT14的浓度更高。这些代谢物涉及精氨酸的生物合成、氨基酸代谢和氮代谢。相比之下,在 H2O2 暴露组中,26 种代谢物的水平在 ZT2 和 ZT14 之间有明显变化,ZT14 水平较低。比较对照组和 H2O2 暴露组在 ZT2 阶段的代谢物水平,有 38 种代谢物受到影响,主要是有机酸及其衍生物和有机氧化合物。功能注释显示,这些改变的代谢物涉及 15 种不同的途径,其中受影响最大的是缬氨酸、亮氨酸和异亮氨酸的生物合成。这项研究揭示了鲑鱼鳃细胞对 H2O2 的反应具有时间依赖性,这反映在细胞内代谢组中。这些发现为了解鱼类粘膜防御的时间调节提供了新的视角。
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引用次数: 0
Cell-mediated and humoral immune responses of cyprinids induced by a live attenuated vaccine against cyprinid herpesvirus 2 infection in comparison to the virus non-permissive high temperature water treatment 鲤科疱疹病毒 2 型减毒活疫苗诱导的鲤鱼细胞介导免疫反应和体液免疫反应与病毒不允许的高温水处理的比较。
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-11-01 DOI: 10.1016/j.fsi.2024.109991
Hiroaki Saito , Lik-Ming Lau , Shungo Minami , Manami Yuguchi , Megumi Matsumoto , Teruyuki Nakanishi , Hidehiro Kondo , Goshi Kato , Motohiko Sano
The live attenuated vaccine (P7-P8 strain) against cyprinid herpesvirus 2 (CyHV-2) infection of goldfish shows high protective efficacy. However, the underlying immune mechanism induced by P7-P8 vaccination remains unknown. It is known that the fish survived in the primary infection with CyHV-2 by the virus non-permissive high temperature (HT) water treatment elicit immunity against secondary virus challenge. In this study, the immunity induced by the P7-P8 vaccine was compared with that by HT treatment. To further explore the immunological responses of cyprinids, in addition to goldfish Carassius auratus, susceptible isogenic ginbuna C. auratus langsdorfii was included in this study. In the primary immune response, cyprinids were vaccinated with P7-P8, or treated with HT. In the secondary immune response, cyprinids were challenged with the virulent CyHV-2. The percentage dynamics of CD4-1 and CD8α positive lymphocytes were determined during the primary and secondary immune responses of the two cyprinids. Blood plasma was sampled to assess the anti-CyHV-2 IgM antibody titers. The vaccination with P7-P8 and HT-treatment induced high protection immunity in the cyprinids with relative percentage survival of over 88 % against virulent virus challenge. Our finding shows that the CD8α positive lymphocytes rather than CD4-1 positive lymphocytes play an important role in the secondary immune responses of cyprinids vaccinated with P7-P8. The CD4-1 positive lymphocytes rather than CD8α positive lymphocytes play an important role in the secondary immune responses of cyprinids treated with HT. The antibody titer of vaccinated cyprinids did not increase greatly even after virulent virus challenge. The results suggest the vaccine activates the CD8α cells and the secondary cell-mediated immunity. The differences in the induced immunity mechanisms in fish by the two measures might be based on the virus either being an avirulent virus form that cannot evade host responses or a virulent virus form that cannot propagate at non-permissive temperature.
针对金鱼疱疹病毒 2(CyHV-2)感染的减毒活疫苗(P7-P8 株)显示出很高的保护效力。然而,P7-P8 疫苗诱导的潜在免疫机制仍然未知。众所周知,通过病毒不允许的高温(HT)水处理,在初次感染 CyHV-2 病毒后存活下来的鱼会对二次病毒挑战产生免疫力。本研究将 P7-P8 疫苗诱导的免疫力与 HT 处理诱导的免疫力进行了比较。为进一步探讨鲤科鱼类的免疫反应,除金鱼外,本研究还纳入了易感的同源金鱼 C. auratus langsdorfii。在初级免疫反应中,鲤鱼接种了 P7-P8 疫苗或接受了 HT 治疗。在次级免疫反应中,鲤鱼接受了毒性CyHV-2的挑战。在两种鲤鱼的初级和次级免疫反应期间,测定 CD4-1 和 CD8α 阳性淋巴细胞的百分比动态。对血浆进行采样,以评估抗CyHV-2 IgM抗体滴度。接种 P7-P8 疫苗和 HT 处理可诱导鲤鱼产生高保护性免疫,在面对毒性病毒挑战时的相对存活率超过 88%。我们的研究结果表明,CD8α阳性淋巴细胞而非CD4-1阳性淋巴细胞在接种P7-P8疫苗的鲤鱼的次级免疫反应中发挥了重要作用。CD4-1 阳性淋巴细胞而非 CD8α 阳性淋巴细胞在接种 HT 的鲤鱼的次级免疫反应中发挥了重要作用。接种疫苗的鲤鱼即使在受到剧毒病毒挑战后,抗体滴度也没有大幅提高。结果表明疫苗激活了 CD8α 细胞和细胞介导的次级免疫。两种方法在诱导鱼类免疫机制上的差异可能是由于病毒要么是无法躲避宿主反应的无毒型病毒,要么是无法在非允许温度下繁殖的有毒型病毒。
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引用次数: 0
Black carp RNF135 enhances RIG-I-mediated antiviral signaling by facilitating its oligomerization 黑鲤 RNF135 通过促进 RIG-I 的寡聚化来增强 RIG-I 介导的抗病毒信号传导
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-11-01 DOI: 10.1016/j.fsi.2024.109987
Chushan Dai , Yujia Miao , Zhan'ao Li , Yumian Liu , Ji Liu , Xiaoyu Liu , Shasha Tan , Hui Wu , Jun Xiao , Jun Zou , Hao Feng
RNF135, also known as RIPLET, plays a crucial role in facilitating RIG-I signaling in mammals. However, the function and regulatory mechanism of RNF135 in teleosts remain much to be elucidated. In this study, RNF135 homolog of black carp (bcRNF135) has been cloned and identified. The coding sequence (CDS) of bcRNF135 gene comprises 1221 nucleotides, encoding a protein of 407 amino acids. Immunoblotting (IB) and immunofluorescence (IF) assays identified that bcRNF135 is approximately 50 kDa and localized in the cytoplasm. qRT-PCR demonstrated that bcRNF135 mRNA levels were increased in host cells following SVCV infection and poly (I:C) stimulation. Co-expressed bcRNF135 obviously enhanced the induced transcription of IFN promoters by bcRIG-I in reporter assay, as well as improved bcRIG-I triggered antiviral response. Notably, bcRNF135 knockdown reduced the antiviral ability of host cells and increased virus replication. Co-immunoprecipitation (Co-IP) assays and IF assays confirmed that bcRNF135 interacted with bcRIG-I. Moreover, SDD-AGE revealed that bcRNF135 promotes the oligomerization of bcRIG-I, a process critical for RIG-I activation. Overall, our data conclude that bcRNF135 enhances bcRIG-I-mediated antiviral signaling by facilitating its ubiquitination and oligomerization, enriching our understanding of RIG-I regulation in teleost innate immunity.
RNF135 又称 RIPLET,在哺乳动物中对促进 RIG-I 信号传导起着至关重要的作用。然而,RNF135在远洋鱼类中的功能和调控机制仍有待进一步阐明。本研究克隆并鉴定了黑鲤的 RNF135 同源物(bcRNF135)。bcRNF135 基因的编码序列(CDS)包括 1221 个核苷酸,编码 407 个氨基酸的蛋白质。免疫印迹(IB)和免疫荧光(IF)分析表明,bcRNF135 的分子量约为 50 kDa,定位于细胞质中。qRT-PCR 证实,在 SVCV 感染和 poly (I:C) 刺激后,宿主细胞中的 bcRNF135 mRNA 水平升高。在报告实验中,共表达的 bcRNF135 明显增强了 bcRIG-I 对 IFN 启动子的诱导转录,并改善了 bcRIG-I 触发的抗病毒反应。值得注意的是,敲除 bcRNF135 会降低宿主细胞的抗病毒能力并增加病毒复制。共免疫共沉淀(Co-IP)检测和 IF 检测证实了 bcRNF135 与 bcRIG-I 的相互作用。此外,SDD-AGE 显示 bcRNF135 促进了 bcRIG-I 的寡聚化,而这一过程对于 RIG-I 的激活至关重要。总之,我们的数据得出结论,bcRNF135通过促进bcRIG-I的泛素化和寡聚化,增强了bcRIG-I介导的抗病毒信号转导,丰富了我们对RIG-I在远缘鱼类先天免疫中的调控的认识。
{"title":"Black carp RNF135 enhances RIG-I-mediated antiviral signaling by facilitating its oligomerization","authors":"Chushan Dai ,&nbsp;Yujia Miao ,&nbsp;Zhan'ao Li ,&nbsp;Yumian Liu ,&nbsp;Ji Liu ,&nbsp;Xiaoyu Liu ,&nbsp;Shasha Tan ,&nbsp;Hui Wu ,&nbsp;Jun Xiao ,&nbsp;Jun Zou ,&nbsp;Hao Feng","doi":"10.1016/j.fsi.2024.109987","DOIUrl":"10.1016/j.fsi.2024.109987","url":null,"abstract":"<div><div>RNF135, also known as RIPLET, plays a crucial role in facilitating RIG-I signaling in mammals. However, the function and regulatory mechanism of RNF135 in teleosts remain much to be elucidated. In this study, RNF135 homolog of black carp (bcRNF135) has been cloned and identified. The coding sequence (CDS) of <em>bcRNF135</em> gene comprises 1221 nucleotides, encoding a protein of 407 amino acids. Immunoblotting (IB) and immunofluorescence (IF) assays identified that bcRNF135 is approximately 50 kDa and localized in the cytoplasm. qRT-PCR demonstrated that bcRNF135 mRNA levels were increased in host cells following SVCV infection and poly (I:C) stimulation. Co-expressed bcRNF135 obviously enhanced the induced transcription of IFN promoters by bcRIG-I in reporter assay, as well as improved bcRIG-I triggered antiviral response. Notably, bcRNF135 knockdown reduced the antiviral ability of host cells and increased virus replication. Co-immunoprecipitation (Co-IP) assays and IF assays confirmed that bcRNF135 interacted with bcRIG-I. Moreover, SDD-AGE revealed that bcRNF135 promotes the oligomerization of bcRIG-I, a process critical for RIG-I activation. Overall, our data conclude that bcRNF135 enhances bcRIG-I-mediated antiviral signaling by facilitating its ubiquitination and oligomerization, enriching our understanding of RIG-I regulation in teleost innate immunity.</div></div>","PeriodicalId":12127,"journal":{"name":"Fish & shellfish immunology","volume":"154 ","pages":"Article 109987"},"PeriodicalIF":4.1,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142554339","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Corrigendum to "A novel vaccination strategy against Vibrio harveyi infection in Asian seabass (Lates calcarifer) with the aid of oxygen nanobubbles and chitosan" [Fish and Shellfish Immunol 149 (2024) 109557]. 更正:"借助氧纳米气泡和壳聚糖预防亚洲鲈鱼(Lates calcarifer)感染 Harveyi 弧菌的新型疫苗接种策略" [Fish and Shellfish Immunol 149 (2024) 109557]。
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-11-01 DOI: 10.1016/j.fsi.2024.110000
Nguyen Giang Thu Lan, Ha Thanh Dong, Nguyen Tien Vinh, Krishna R Salin, Saengchan Senapin, Khaettareeya Pimsannil, Sophie St-Hilaire, Andrew P Shinn, Channarong Rodkhum
{"title":"Corrigendum to \"A novel vaccination strategy against Vibrio harveyi infection in Asian seabass (Lates calcarifer) with the aid of oxygen nanobubbles and chitosan\" [Fish and Shellfish Immunol 149 (2024) 109557].","authors":"Nguyen Giang Thu Lan, Ha Thanh Dong, Nguyen Tien Vinh, Krishna R Salin, Saengchan Senapin, Khaettareeya Pimsannil, Sophie St-Hilaire, Andrew P Shinn, Channarong Rodkhum","doi":"10.1016/j.fsi.2024.110000","DOIUrl":"10.1016/j.fsi.2024.110000","url":null,"abstract":"","PeriodicalId":12127,"journal":{"name":"Fish & shellfish immunology","volume":" ","pages":"110000"},"PeriodicalIF":4.1,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142564203","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Insights into the DNA methylation of Portunus trituberculatus in response to Vibrio parahaemolyticus infection 三疣梭子蟹 DNA 甲基化对副溶血性弧菌感染的影响。
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-11-01 DOI: 10.1016/j.fsi.2024.109983
Xianfa Zhou , Dongfang Sun , Junyang Guo , Jianjian Lv , Ping Liu , Baoquan Gao
Vibrio parahaemolyticus is the main pathogen causing acute hepatopancreatic necrotic disease in crustaceans. To elucidate the epigenetic regulatory mechanism of crustacean resistance to V. parahaemolyticus infection, we conducted artificial infection studies on Portunus trituberculatus. The results showed that the mortality rate reached the highest at 12 h of artificial infection, which was 23.69 %. At 72 h after V parahaemolyticus infection, the expression level of DNA demethylase (ten-eleven-translocation protein) Tet was significantly decreased, the expression of DNA methyltransferase Dnmt3B fluctuated significantly. Based on the differential expression levels of Tet and Dnmt3B. We depict for DNA methylation profiles of the whole genome of P. trituberculatus at single-base resolution by using whole-genome bisulfite sequencing (WGBS) on hemolymph tissues. The overall DNA methylation level was low at 2.16 % in P. trituberculatus hemolymph. A total of 2590 differentially methylated regions (DMRs) were identified, of which 1329 were hypermethylated and 1261 were hypomethylated, and 1389 genes were annotated in these DMRs. Differently methylated genes (DMGs) were significantly enriched in ribosomes (KO03010), protein kinases (KO01001), cell cycle (HSA04110), endocrine resistance (HSA01522) and FoxO signaling pathway (KO04068). Finally, we selected six differentially methylated genes for quantitative analysis. The results showed that DNA methylation not only has a negative regulatory effect on gene expression, but also has a positive regulatory effect. These results indicated that DNA methylation in the regulation of genes involved in immune responses contributes to the resistance of P. trituberculatus to V. parahaemolyticus, which is valuable for understanding how crustaceans regulate the innate immune system to defend against bacterial infections.
副溶血性弧菌是引起甲壳类急性肝胰腺坏死性疾病的主要病原体。为了阐明甲壳动物对副溶血弧菌感染的抗性的表观遗传调控机制,我们对三疣梭子蟹进行了人工感染研究。结果表明,人工感染 12 h 时死亡率最高,为 23.69 %。副溶血弧菌感染72 h后,DNA去甲基化酶(十-十一-转位蛋白)Tet的表达水平显著下降,DNA甲基转移酶Dnmt3B的表达水平波动明显。根据 Tet 和 Dnmt3B 的不同表达水平。我们利用全基因组亚硫酸氢盐测序(WGBS)技术对三疣梭子蟹血淋巴组织进行了单碱基分辨率的DNA甲基化分析。三疣梭子蟹血淋巴中的 DNA 甲基化水平较低,仅为 2.16%。共鉴定出 2,590 个差异甲基化区域(DMRs),其中 1,329 个为高甲基化区域,1,261 个为低甲基化区域,在这些 DMRs 中注释了 1,389 个基因。不同甲基化基因(DMGs)在核糖体(KO03010)、蛋白激酶(KO01001)、细胞周期(HSA04110)、内分泌抵抗(HSA01522)和FoxO信号通路(KO04068)中明显富集。最后,我们选择了 6 个差异甲基化基因进行定量分析。结果表明,DNA甲基化不仅对基因表达有负向调控作用,而且还有正向调控作用。这些结果表明,DNA甲基化对参与免疫反应的基因的调控有助于三疣梭子蟹对副溶血性弧菌的抵抗力,这对了解甲壳类如何调控先天免疫系统以抵御细菌感染很有价值。
{"title":"Insights into the DNA methylation of Portunus trituberculatus in response to Vibrio parahaemolyticus infection","authors":"Xianfa Zhou ,&nbsp;Dongfang Sun ,&nbsp;Junyang Guo ,&nbsp;Jianjian Lv ,&nbsp;Ping Liu ,&nbsp;Baoquan Gao","doi":"10.1016/j.fsi.2024.109983","DOIUrl":"10.1016/j.fsi.2024.109983","url":null,"abstract":"<div><div><em>Vibrio parahaemolyticus</em> is the main pathogen causing acute hepatopancreatic necrotic disease in crustaceans. To elucidate the epigenetic regulatory mechanism of crustacean resistance to <em>V</em>. <em>parahaemolyticus</em> infection, we conducted artificial infection studies on <em>Portunus trituberculatus</em>. The results showed that the mortality rate reached the highest at 12 h of artificial infection, which was 23.69 %. At 72 h after <em>V parahaemolyticus</em> infection, the expression level of DNA demethylase (ten-eleven-translocation protein) <em>Tet</em> was significantly decreased, the expression of DNA methyltransferase <em>Dnmt3B</em> fluctuated significantly. Based on the differential expression levels of <em>Tet</em> and <em>Dnmt3B</em>. We depict for DNA methylation profiles of the whole genome of <em>P. trituberculatus</em> at single-base resolution by using whole-genome bisulfite sequencing (WGBS) on hemolymph tissues. The overall DNA methylation level was low at 2.16 % in <em>P. trituberculatus</em> hemolymph. A total of 2590 differentially methylated regions (DMRs) were identified, of which 1329 were hypermethylated and 1261 were hypomethylated, and 1389 genes were annotated in these DMRs. Differently methylated genes (DMGs) were significantly enriched in ribosomes (KO03010), protein kinases (KO01001), cell cycle (HSA04110), endocrine resistance (HSA01522) and FoxO signaling pathway (KO04068). Finally, we selected six differentially methylated genes for quantitative analysis. The results showed that DNA methylation not only has a negative regulatory effect on gene expression, but also has a positive regulatory effect. These results indicated that DNA methylation in the regulation of genes involved in immune responses contributes to the resistance of <em>P</em>. <em>trituberculatus</em> to <em>V</em>. <em>parahaemolyticus</em>, which is valuable for understanding how crustaceans regulate the innate immune system to defend against bacterial infections.</div></div>","PeriodicalId":12127,"journal":{"name":"Fish & shellfish immunology","volume":"154 ","pages":"Article 109983"},"PeriodicalIF":4.1,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142497577","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The characterization of BCL-xL displays a non-apoptotic role in suppression of NLRP1 inflammasome assembly in common carp (Cyprinus carpio L.) BCL-xL在抑制鲤鱼(Cyprinus carpio L.)NLRP1炎症小体组装方面发挥了非凋亡作用。
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-11-01 DOI: 10.1016/j.fsi.2024.110001
Hong Jiang , Jiahui Zhang , Tingting Liu , Xinping Chen , Guiwen Yang , Hua Li
The NLRP1 inflammasome is a crucial muti-protein complex in the host anti-pathogen immune response. The previous studies have revealed that the anti-apoptotic protein BCL-xL played a non-apoptotic role by impeding the activation of NLRP1 inflammasome in mammals. However, the potential role of BCL-xL in regulating the inflammasome in fish remains unclear. In the present study, the BCL-xL (CcBCL-xL) was cloned from the head kidney of common carp (Cyprinus carpio L.), and its regulatory effect on the NLRP1 inflammasome was explored. It was found that CcBCL-xL predominantly localized in the brain, spleen and head kidney of common carp, and upon stimulation with Aeromonas hydrophila (A. hydrophila), Edwardsiella tarda (E. tarda), or spring viremia of carp virus (SVCV), the expression of CcBCL-xL significantly increased in multiple immune organs. The interaction between CcBCL-xL and CcNLRP1 was confirmed by co-immunoprecipitation and immunofluorescence. Meanwhile, we also found that CcBCL-xL significantly inhibited the assembly of the CcNLRP1 inflammasome, through ASC oligomerization, ASC specks formation and cytotoxicity experiments. Furthermore, our results revealed that CcBCL-xL interacted with the NACHT, LRR, FIIND, and CARD domains of CcNLRP1. Taken together, the results provide a theoretical foundation for further exploring the regulatory mechanism of NLRP1, and for the prevention and treatment of infectious diseases in fish.
NLRP1 炎症小体是宿主抗病原体免疫反应中一个重要的突变蛋白复合物。先前的研究发现,在哺乳动物体内,抗凋亡蛋白 BCL-xL 通过阻碍 NLRP1 炎症小体的活化发挥非凋亡作用。然而,BCL-xL 在调节鱼类炎症小体中的潜在作用仍不清楚。本研究从鲤鱼头肾中克隆了 BCL-xL(CcBCL-xL),并探讨了它对 NLRP1 炎症小体的调控作用。研究发现,CcBCL-xL 主要定位于鲤鱼的脑、脾和头肾,在嗜水气单胞菌(A. hydrophila)、Edwardsiella tarda(E. tarda)或春季鲤鱼病毒(SVCV)的刺激下,CcBCL-xL 在多个免疫器官中的表达显著增加。通过共沉淀和免疫荧光证实了 CcBCL-xL 与 CcNLRP1 之间的相互作用。同时,我们还通过ASC寡聚化、ASC斑点形成和细胞毒性实验发现,CcBCL-xL能显著抑制CcNLRP1炎性体的组装。此外,我们的研究结果表明,CcBCL-xL 与 CcNLRP1 的 NACHT、LRR、FIIND 和 CARD 结构域相互作用。综上所述,这些结果为进一步探索 NLRP1 的调控机制以及预防和治疗鱼类感染性疾病提供了理论基础。
{"title":"The characterization of BCL-xL displays a non-apoptotic role in suppression of NLRP1 inflammasome assembly in common carp (Cyprinus carpio L.)","authors":"Hong Jiang ,&nbsp;Jiahui Zhang ,&nbsp;Tingting Liu ,&nbsp;Xinping Chen ,&nbsp;Guiwen Yang ,&nbsp;Hua Li","doi":"10.1016/j.fsi.2024.110001","DOIUrl":"10.1016/j.fsi.2024.110001","url":null,"abstract":"<div><div>The NLRP1 inflammasome is a crucial muti-protein complex in the host anti-pathogen immune response. The previous studies have revealed that the anti-apoptotic protein BCL-xL played a non-apoptotic role by impeding the activation of NLRP1 inflammasome in mammals. However, the potential role of BCL-xL in regulating the inflammasome in fish remains unclear. In the present study, the BCL-xL (<em>Cc</em>BCL-xL) was cloned from the head kidney of common carp (<em>Cyprinus carpio</em> L.), and its regulatory effect on the NLRP1 inflammasome was explored. It was found that <em>Cc</em>BCL-xL predominantly localized in the brain, spleen and head kidney of common carp, and upon stimulation with <em>Aeromonas hydrophila</em> (<em>A. hydrophila</em>), <em>Edwardsiella tarda</em> (<em>E. tarda</em>), or spring viremia of carp virus (SVCV), the expression of <em>Cc</em>BCL-xL significantly increased in multiple immune organs. The interaction between <em>Cc</em>BCL-xL and <em>Cc</em>NLRP1 was confirmed by co-immunoprecipitation and immunofluorescence. Meanwhile, we also found that <em>Cc</em>BCL-xL significantly inhibited the assembly of the <em>Cc</em>NLRP1 inflammasome, through ASC oligomerization, ASC specks formation and cytotoxicity experiments. Furthermore, our results revealed that <em>Cc</em>BCL-xL interacted with the NACHT, LRR, FIIND, and CARD domains of <em>Cc</em>NLRP1. Taken together, the results provide a theoretical foundation for further exploring the regulatory mechanism of NLRP1, and for the prevention and treatment of infectious diseases in fish.</div></div>","PeriodicalId":12127,"journal":{"name":"Fish & shellfish immunology","volume":"155 ","pages":"Article 110001"},"PeriodicalIF":4.1,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142568267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Common carp Peptidoglycan Gecognition Protein 2 (CcPGRP2) alleviates gut dysbiosis induced by Aeromonas hydrophila 鲤鱼肽聚糖识别蛋白2(CcPGRP2)可减轻嗜水气单胞菌引起的肠道菌群失调。
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-10-31 DOI: 10.1016/j.fsi.2024.109997
Xinli Ding , Kaini Zhang , Qianmin Zhuang , Yanru Chen , Hua Li , Shili Liu , Lei Chen

Objectives

Peptidoglycan recognition protein 2 (PGRP2) plays a role in regulating immune defense in fish. Our previous studies found that CcPGRP2 helped maintain the integrity of the intestinal mucosa of carp and could bind and agglutinate bacteria when infected with A. hydrophila. However, its effect on the structure of the microbiota has not yet been clarified. Therefore, it is necessary to explore the effect of CcPGRP2 on the intestinal microbiota structure in fish.

Methods

In the present study, common carp were injected with CcPGRP2 protein intraperitoneally and high-throughput sequencing technology was used to study the difference in intestinal microbiota structure. Firstly, the variations in α- and β-diversity of the intestinal microbiota of common carp in control and treatment groups were tested, and the results indicated that intraperitoneal injection of A. hydrophila significantly reduced the microbial α-diversity (within-samples) and β-diversity (between-samples) in common carp gut samples, but CcPGRP2 protein could alleviate these reduction, no matter in the case of simultaneous injection of CcPGRP2 protein and A. hydrophila or a intermitted injection with first injection of CcPGRP2 and then A. hydrophila after 6 h. Subsequently, the intestinal microbiota structures of common carp on various taxonomic levels were interrogated under the treatments.

Results

The data revealed that the abundance of intestinal pathogen Aeromonas was reduced when CcPGRP2 was injected in the common carp, and the alleviation effect was better when CcPGRP2 was injected with A. hydrophila at the same time, implying the function of CcPGRP2 in inhibiting intestinal dysbiosis. Moreover, the functional prediction demonstrated the possible physiological shifts and the influences of microbes on the environment after the common carp is injected with A. hydrophila and CcPGRP2. Finally, the bacterial interaction patterns results showed that the groups injected with A. hydrophila were diverted away from the control group in terms of clustering relationship, while the injection of CcPGRP2 could reverse the effect of A. hydrophila and keep the microbial structure closer to that of the control group; meanwhile, the effect of simultaneous injection of A. hydrophila and CcPGRP2 was better than that of intermitted injections.

Conclusions

All the results in this study suggest that the CcPGRP2 could alleviate the internal dysbiosis under pathogen infection, which will provide a foundation for disease resistance breeding.
目的:肽聚糖识别蛋白 2 (PGRP2) 在调节鱼类的免疫防御方面发挥作用。我们之前的研究发现,肽聚糖识别蛋白 2 有助于维持鲤鱼肠道粘膜的完整性,并能在鲤鱼感染嗜水青虫时与细菌结合并凝集细菌。然而,它对微生物群结构的影响尚未明确。因此,有必要探讨 CcPGRP2 对鱼类肠道微生物群结构的影响:本研究给鲤鱼腹腔注射 CcPGRP2 蛋白,并利用高通量测序技术研究肠道微生物群结构的差异。首先,检测了对照组和处理组鲤鱼肠道微生物区系α和β多样性的变化,结果表明腹腔注射嗜水鲱鱼能显著降低鲤鱼肠道样本中微生物的α多样性(样本内)和β多样性(样本间),但 CcPGRP2 蛋白能缓解这种降低,无论是同时注射 CcPGRP2 蛋白和嗜水鲱鱼,还是间隔注射 CcPGRP2 蛋白和嗜水鲱鱼。随后,对不同处理下鲤鱼肠道微生物区系结构的不同分类水平进行了研究:结果:数据显示,给鲤鱼注射 CcPGRP2 可降低肠道病原气单胞菌的数量,而同时给鲤鱼注射 CcPGRP2 和嗜水气单胞菌时,缓解效果更好,这表明 CcPGRP2 具有抑制肠道菌群失调的功能。此外,功能预测表明了鲤鱼注射蚜蝇和 CcPGRP2 后可能出现的生理变化以及微生物对环境的影响。最后,细菌相互作用模式结果表明,注射嗜水青虫的组在聚类关系上偏离了对照组,而注射 CcPGRP2 可逆转嗜水青虫的影响,使微生物结构更接近对照组;同时注射嗜水青虫和 CcPGRP2 的效果优于间断注射:本研究的所有结果表明,CcPGRP2 可以缓解病原体感染下的内部菌群失调,这将为抗病育种提供基础。
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引用次数: 0
Transcriptome analysis reveals the mechanism of black rockfish (Sebastes schlegelii) macrophages respond to Edwardsiella piscicida infection in vivo 转录组分析揭示了黑石首鱼(Sebastes schlegelii)巨噬细胞在体内应对 Edwardsiella piscicida 感染的机制。
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-10-31 DOI: 10.1016/j.fsi.2024.109999
Xuangang Wang , Xiangfu Kong , Zhentao Chen , Hengshun Li , Ze Tao , Quanqi Zhang , Haiyang Yu
Sebastes schlegelii is an economically significant marine fish that faces serious threats from various pathogens. Edwardsiella piscicida is a pathogenic bacterium that primarily affects fish, including S. schlegelii, leading to severe disease. Although numerous reports have documented the transcriptome sequencing of various fish tissues in response to E. piscicida infection, studies focusing on specific cells remain scarce. In this study, S. schlegelii were infected by intraperitoneal injection of E. piscicida. Severe external clinical signs were observed in E. piscicida-infected S. schlegelii and pathological examination demonstrated structural damage of the head kidney following treatment with E. piscicida. Furthermore, macrophages were isolated from the head kidneys of both the control and E. piscicida-infected groups for RNA sequencing (RNA-seq). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated that the DEGs were closely associated with immune response and oxidative stress. Additionally, Weighted Gene Co-expression Network Analysis (WGCNA) was performed based on the data from this study and RNA-seq files of macrophages infected with E. piscicida in vitro, revealing that immune responses, oxidative stress, and mitochondrial damage were involved in the macrophage response to E. piscicida infection both in vivo and in vitro. This study provides a reference for understanding the mechanisms by which teleost immune cells respond to pathogen invasion and enhances our comprehension of teleost innate immunity.
石首鱼是一种具有重要经济价值的海水鱼,面临着各种病原体的严重威胁。Edwardsiella piscicida 是一种致病细菌,主要影响鱼类,包括 S. schlegelii,导致严重疾病。尽管许多报告都记录了各种鱼类组织对 E. piscicida 感染反应的转录组测序,但针对特定细胞的研究仍然很少。在本研究中,通过腹腔注射 E. piscicida 感染了 S. schlegelii。经 E. piscicida 感染的 S. schlegelii 出现了严重的外部临床症状,病理检查显示,经 E. piscicida 治疗后,头部肾脏结构受损。此外,从对照组和E. piscicida感染组的头肾中分离出巨噬细胞,进行RNA测序(RNA-seq)。基因本体(GO)和京都基因组百科全书(KEGG)分析表明,DEGs与免疫反应和氧化应激密切相关。此外,根据本研究的数据和体外感染鱼腥藻的巨噬细胞的RNA-seq文件,进行了加权基因共表达网络分析(WGCNA),发现免疫反应、氧化应激和线粒体损伤参与了巨噬细胞对体内和体外鱼腥藻感染的反应。这项研究为了解远洋渔业免疫细胞应对病原体入侵的机制提供了参考,并加深了我们对远洋渔业先天免疫的理解。
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引用次数: 0
Combined effects of low pH stress and bacterial infection on the transcriptional changes of hemocytes in Chinese mitten crab Eriocheir sinensis 低pH胁迫和细菌感染对中华绒螯蟹血细胞转录变化的联合影响
IF 4.1 2区 农林科学 Q1 FISHERIES Pub Date : 2024-10-30 DOI: 10.1016/j.fsi.2024.109995
Yi Zhang , Xiaoli Zhang , Jiaxin Xu , Jinbin Zheng , Zhaoxia Cui
Water pH is a critical environmental factor for aquaculture. Acidification is a pressing environmental issue that poses significant threats to the aquaculture industry. Since the outbreaks of disease generally accompany with environmental stress, comparative transcriptome analyses were performed to investigate the combined effects of low pH stress and bacterial infection on the transcriptional changes of hemocytes in the economically important crab Eriocheir sinensis. The results revealed that the immune deficiency (IMD) pathway and prophenoloxidase (proPO) system was activated to defense against Vibro parahaemolyticus even when crabs were subjected to low pH stress, whereas low pH stress resulted in the disorder of Toll-like receptor (TLR) pathway upon V. parahaemolyticus infection. Moreover, low pH stress might weaken crabs’ defense against V. parahaemolyticus by inhibiting the up-regulation of crustin and suppressing the expression of lysozyme, and disturb the maintaining of protein homeostasis through the transcriptional decrement of a batch of heat shock proteins (HSPs). It is worth noting that both V. parahaemolyticus infection and low pH stress might suppress the energy metabolism in the hemocytes via inhibiting the expression of critical enzymes, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex and fumarase, in the tricarboxylic acid (TCA) cycle. This study provides novel understandings concerning the transcriptional changes of hemocyte in E. sinensis subjected to a combination of low pH stress and V. parahaemolyticus infection as well as contribute to optimize the management strategies for the prevention and control of diseases in E. sinensis farming.
水的 pH 值是水产养殖的关键环境因素。酸化是一个紧迫的环境问题,对水产养殖业构成重大威胁。由于疾病的爆发通常伴随着环境胁迫,因此我们进行了转录组比较分析,以研究低 pH 胁迫和细菌感染对具有重要经济价值的中华绒螯蟹血细胞转录变化的综合影响。结果发现,即使在低pH值胁迫下,螃蟹的免疫缺陷(IMD)通路和丙酚氧化酶(proPO)系统也被激活,以防御副溶血性弧菌;而低pH值胁迫导致副溶血性弧菌感染后Toll样受体(TLR)通路紊乱。此外,低pH应激可能通过抑制甲壳素的上调和抑制溶菌酶的表达来削弱河蟹对副溶血性弧菌的防御能力,并通过降低一批热休克蛋白(HSPs)的转录来干扰蛋白质平衡的维持。值得注意的是,副溶血弧菌感染和低pH值应激都可能通过抑制丙酮酸脱氢酶复合物中的二氢脂酰赖氨酸-残基乙酰转移酶和富马酸三羧酸循环中的富马酸酶等关键酶的表达来抑制血细胞的能量代谢。这项研究为了解中华鳖在低pH值胁迫和副溶血性弧菌感染共同作用下血细胞的转录变化提供了新的视角,有助于优化中华鳖养殖过程中疾病防控的管理策略。
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引用次数: 0
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Fish & shellfish immunology
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