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Automated quantification of ecological interactions from video 从视频中自动量化生态相互作用
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-16 DOI: 10.3389/fmars.2025.1694767
Mariana Sadde, Benjamin T. Martin
Ecological interactions, such as predation, are fundamental events that underlie the flow and distribution of energy through food webs. Yet, directly measuring interaction rates in nature and how they vary across space and time remains a core challenge in ecology. To address this, we developed a machine learning pipeline that combines object detection, tracking, behavioral classification, and bias correction to quantify feeding rates of the planktivorous reef fish Chromis multilineata in situ . We show that the pipeline generates precise, unbiased estimates of planktivory at fine temporal and spatial scales, and use it to reveal how feeding rate changes in response to predator presence and proximity to refuge. While developed and tested in the context of planktivory, we expect this approach can be adapted to quantify a wider array of ecological interactions in situ .
生态相互作用,如捕食,是食物网中能量流动和分配的基础。然而,直接测量自然界的相互作用率以及它们如何在空间和时间上变化仍然是生态学的核心挑战。为了解决这个问题,我们开发了一种机器学习管道,将目标检测、跟踪、行为分类和偏差校正结合起来,量化了浮游礁石鱼多线鱼(Chromis multilineata)的摄食率。我们表明,该管道可以在精细的时间和空间尺度上对浮游生物进行精确、无偏的估计,并利用它来揭示捕食者的存在和避难所的邻近程度如何影响摄食率的变化。虽然在浮游生物的背景下开发和测试了这种方法,但我们希望这种方法可以用于量化更广泛的生态相互作用。
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引用次数: 0
Wave power extraction performance from Edinburgh Duck WEC integrated with floating breakwater 结合浮式防波堤的爱丁堡鸭WEC波浪能提取性能
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-16 DOI: 10.3389/fmars.2025.1723929
R.R. Vidyabhushan, Debabrata Karmakar
The performance of the Edinburgh Duck wave energy converter (ED-WEC) shows great potential when integrated with oceanic structures. In the present study, the wave energy extraction performance of an ED-WEC integrated with a box-type floating breakwater (FBW) is investigated based on small-amplitude wave theory, with the aim of harnessing maximum wave energy from the scattered and reflected waves in the presence of offshore structures. The scattered and reflected waves from marine structures approach the WEC, which, in turn, increases the wave power absorption of the WEC. The associated scattered and reflected waves for wave interactions with hybrid structures are studied, and the capture width ratio (CWR), wave power absorption, motion amplitude, and mean interaction factors of the ED–FBW hybrid system are discussed. The hydrodynamic coefficients play an important role in evaluating the CWR, wave power absorption, and mean interaction factor. The numerical results are analyzed for different structural and geometrical parameters, such as the width of the ED, the draft of the ED, the distance between the ED-WEC and the FBW, and the wave incident angle. Further, the numerical results obtained for the box-type FBW are compared with those for trapezoidal-type FBW, <jats:inline-formula> <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"> <mml:mrow> <mml:mi>π</mml:mi> <mml:mtext>-type</mml:mtext> </mml:mrow> </mml:math> </jats:inline-formula> FBW, parabolic type FBW and semi-circular type FBW. The power absorbed <jats:inline-formula> <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"> <mml:mrow> <mml:msub> <mml:mi>P</mml:mi> <mml:mrow> <mml:mi>a</mml:mi> <mml:mi>b</mml:mi> <mml:mi>s</mml:mi> </mml:mrow> </mml:msub> </mml:mrow> </mml:math> </jats:inline-formula> by the integrated ED-WEC is noted to increase in the narrow region of wave period. In addition, the increase in draft of the ED results in increase of submergence volume and variation in the hydrodynamic coefficients. In the case of an isolated system for deep water depth, the variation in CWR in <jats:inline-formula> <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"> <mml:mrow> <mml:msub> <mml:mi>ξ</mml:mi> <mml:mrow> <mml:mn>33</mml:mn> </mml:mrow> </mml:msub> </mml:mrow> </mml:math> </jats:inline-formula> is observed to be within <jats:inline-formula> <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"> <mml:mrow> <mml:mn>4.16</mml:mn> <mml:mo>%</mml:mo> <mml:mo><</mml:mo> <mml:mi>C</mml:mi> <mml:mi>W</mml:mi> <mml:mi>R</mml:mi> <mml:mo><</mml:mo> <mml:mn>31.25</mml:mn> <mml:mo>%</mml:mo> </mml:mrow> </mml:math> </jats:inline-formula> while in <jats:inline-formula> <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"> <mml:mrow> <mml:msub> <mml:mi>ξ</mml:mi> <mml:mrow> <mml:mn>44</mml:mn> </mml:mrow> </mml:msub> </mml:mrow> </mml:math> </jats:inline-formula> , it is <jats:inli
爱丁堡鸭波能转换器(ED-WEC)与海洋结构结合后,其性能显示出巨大的潜力。基于小振幅波理论,研究了结合箱式浮式防波堤(FBW)的ED-WEC的波浪能提取性能,以最大限度地利用海上结构物存在时的散射波和反射波中的波浪能。来自海洋结构的散射波和反射波接近WEC,这反过来又增加了WEC的波能吸收。研究了波与杂化结构相互作用的相关散射波和反射波,讨论了ED-FBW混合系统的捕获宽度比(CWR)、波功率吸收、运动振幅和平均相互作用因子。水动力系数在评价水冲比、波能吸收和平均相互作用因子中起着重要作用。数值结果分析了不同结构参数和几何参数下的数值计算结果,如波纹管宽度、波纹管吃水、波纹管与波纹管之间的距离以及波浪入射角。进一步,将箱形流场的数值计算结果与梯形流场、π型流场、抛物线型流场和半圆形流场的数值计算结果进行了比较。在较窄的波周期范围内,集成电- wec吸收的功率增大。此外,导流装置吃水的增加会导致淹没体积的增加和水动力系数的变化。在深水隔离系统中,ξ 33的CWR变化在4.16% < CWR <; 31.25%以内,ξ 44的CWR变化在52.54% < CWR <; 66.1%以内。研究结果将有助于在实际海况条件下优化ED-WEC-FBW结构,并提供与海防结构一起发电的潜在解决方案。
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引用次数: 0
Antibacterial activity and mechanism of sanguinarine against Vibrio parahaemolyticus 血根碱对副溶血性弧菌的抑菌活性及其作用机制
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-16 DOI: 10.3389/fmars.2025.1755289
Lei Huang, Kuan Chu, Aqin Zheng, Xue Cai, Xialian Bu, Xianqi Peng, Jing Chen, Jiayun Yao
Sanguinarine (SE), a benzophenanthridine alkaloid derived from Macleaya cordata , represents a promising antibiotic alternative in aquaculture. However, its antibacterial mechanism against the economically important pathogen Vibrio parahaemolyticus remains poorly understood. This study investigated the antibacterial activity and mechanism of SE against V. parahaemolyticus through integrated phenotypic and transcriptomic approaches. In vitro assays showed that SE exhibited notable antibacterial activity with a minimum inhibitory concentration (MIC) of 62.5 μg/mL. Phenotypic analyses revealed that SE disrupted cell membrane integrity of V. parahaemolyticus , as evidenced by ultrastructural damage and increased membrane permeability, and significantly inhibited biofilm formation and bacterial motility (swimming and swarming) at sub-inhibitory concentrations. In an in vivo challenge trial in Macrobrachium rosenbergii , dietary supplementation with SE (0.5 and 1.0 g/kg feed) significantly reduced bacterial load in the hepatopancreas and increased survival rates, while also mitigating hepatopancreas histopathological damage. Transcriptome analysis identified 1,657 differentially expressed genes, with significant downregulation of the two-component system and key metabolic pathways such as the citrate cycle (TCA), oxidative phosphorylation, and fatty acid degradation. These findings demonstrate that SE exerts antibacterial effects through multi-target mechanisms involving membrane disruption, virulence attenuation, and energy metabolism interference, highlighting its potential as a sustainable agent for controlling V. parahaemolyticus infections in aquaculture.
血根碱(SE)是一种从鱼腥草(Macleaya cordata)中提取的苯并苯胺生物碱,是一种很有前途的水产养殖抗生素替代品。然而,其对经济上重要的病原体副溶血性弧菌的抗菌机制仍然知之甚少。本研究通过综合表型和转录组学方法研究了SE对副溶血性弧菌的抑菌活性和抑菌机制。体外实验表明,SE具有明显的抑菌活性,最低抑菌浓度(MIC)为62.5 μg/mL。表型分析显示,SE破坏了副溶血性弧菌的细胞膜完整性,表现为超微结构损伤和膜通透性增加,并在亚抑制浓度下显著抑制生物膜的形成和细菌的运动(游泳和蜂群)。在罗氏沼虾(Macrobrachium rosenbergii)体内攻毒试验中,饲粮中添加SE(0.5和1.0 g/kg饲料)可显著降低肝胰脏细菌负荷,提高存活率,同时减轻肝胰脏的组织病理学损伤。转录组分析鉴定出1,657个差异表达基因,双组分系统和关键代谢途径(如柠檬酸循环(TCA)、氧化磷酸化和脂肪酸降解)显著下调。这些结果表明,SE通过膜破坏、毒力衰减和能量代谢干扰等多靶点机制发挥抗菌作用,突出了其作为一种可持续控制水产养殖副溶血性弧菌感染的潜力。
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引用次数: 0
They can’t stand the heat: marine heatwaves and bleaching impair stress responses and reproduction of a photosynthetic symbiont-bearing sea slug 它们不能忍受高温:海洋热浪和白化损害了一种光合共生的海蛞蝓的应激反应和繁殖
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-16 DOI: 10.3389/fmars.2025.1719569
Ruben X. G. Silva, Diana Madeira, Paulo Cartaxana, Ricardo Calado
Marine heatwaves (MHW) are intensifying, causing mass bleaching events in coral reefs. While their ecological and socioeconomic impacts are well documented, their cascading effects on specialized organisms remain understudied. Here, we investigate the impact that MHW and feeding on bleached prey have on a stenophagous tropical nudibranch, Berghia stephanieae , by analyzing its survival, reproduction, cellular stress response (CSR) and the photosynthetic activity of its endosymbionts. Thermal stress significantly reduced the number of eggs laid by B. stephanieae , while parental investment per egg was maintained. Moreover, exposure to a combination of MHW and bleached prey, impaired this nudibranch’s CSR and reduced survival, indicating a performance breakdown. These findings highlight the vulnerability of such specialized predators to MHW and the need to integrate them in marine conservation strategies. With extreme climate events becoming more frequent and prolonged, species featuring specialized diets can be amongst those paying the highest toll.
海洋热浪(MHW)正在加剧,导致珊瑚礁大规模白化事件。虽然它们的生态和社会经济影响已被充分记录,但它们对特殊生物的级联效应仍未得到充分研究。本文通过分析热带裸鳃藓属(Berghia stephanieae)的生存、繁殖、细胞应激反应(CSR)及其内共生生物的光合活性,研究了MHW和摄食漂白猎物对其的影响。热胁迫显著降低了金凤花的产蛋量,但维持了每卵亲本投入。此外,暴露在MHW和漂白猎物的组合中,会损害这种裸鳃动物的CSR并降低存活率,表明性能崩溃。这些发现强调了这些专门的捕食者对MHW的脆弱性,以及将它们纳入海洋保护战略的必要性。随着极端气候事件变得越来越频繁和持续,以特殊饮食为特征的物种可能会付出最高的代价。
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引用次数: 0
Seasonal and interannual variability of the barrier layer in the Bay of Bengal: characteristics and mechanisms 孟加拉湾阻挡层的季节和年际变化:特征和机制
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-16 DOI: 10.3389/fmars.2025.1721476
Tongtong Liu, Xutao Ni, Yun Qiu
The Bay of Bengal (BoB) exhibits significant seasonal and interannual variability in barrier layer thickness (BLT). While previous studies have mainly provided qualitative insights into the dynamical mechanisms controlling the variabilities of BLT, quantitative assessments of the relative contributions of temperature and salinity remain unknown. To address this gap, this study employs a quantitative separation method​ to distinguish the roles of thermal and saline processes in regulating BLT in BoB, and combined with regression analyses of surface forcing fields to diagnose the dominant driving processes. Seasonally, thermal processes dominate BLT variability in most region and seasons via monsoon-driven ocean circulation and Ekman pumping that affects the isothermal layer depth, while saline processes only dominate the BLT thinning in the central BoB and western equatorial region during summer, mainly through the intrusion of high-salinity waters. Interannually, BLT variability is primarily controlled by thermal processes associated with Indian Ocean Dipole and El Niño-Southern Oscillation events, including remote Kelvin and Rossby wave propagation and local Ekman pumping that alter the ILD, while salinity advection modulates regional differences, particularly in the western BoB. The application of this quantitative framework clarifies previously ambiguous mechanisms, and supports the improvement of BLT simulation in ocean models.
孟加拉湾(BoB)障壁层厚度(BLT)表现出显著的季节和年际变化。虽然以往的研究主要提供了控制BLT变异的动力学机制的定性见解,但对温度和盐度相对贡献的定量评估仍然未知。为了弥补这一空白,本研究采用定量分离的方法来区分热过程和盐水过程在BoB中调节BLT的作用,并结合表面强迫场的回归分析来诊断主导驱动过程。在季节上,热过程通过季风驱动的海洋环流和影响等温层深度的Ekman泵送主导了大部分地区和季节的BLT变薄,而咸水过程仅在夏季主导了中部和赤道西部地区BLT变薄,主要是通过高盐度海水的入侵。年际间,BLT变化主要受与印度洋偶极子和El Niño-Southern振荡事件相关的热过程控制,包括远程开尔文波和罗斯比波传播以及改变ILD的局部Ekman泵送,而盐度平流调节区域差异,特别是在西部BoB。这一定量框架的应用澄清了以前模棱两可的机制,并支持改进海洋模式中的BLT模拟。
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引用次数: 0
Multi-marker eDNA metabarcoding reveals significant eukaryotic biodiversity gaps in the Gulf of Gdańsk, Southeastern Baltic Sea 多标记eDNA元条形码揭示了波罗的海东南部Gdańsk湾真核生物多样性的显著差异
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-16 DOI: 10.3389/fmars.2025.1695900
Ngoc-Loi Nguyen, Dhanushka Devendra, Natalia Szymańska, Justyna Falkowska, Mathis Noël Bernard, Marek Zajączkowski, Jan Pawłowski, Joanna Pawłowska
As climate change and human pressures intensify, advancing our understanding of biodiversity and ecological shifts in vulnerable regions, such as the Baltic Sea, is becoming increasingly important. In this study, we analyzed the diversity of microeukaryotes in the Gulf of Gdańsk, the southern Baltic Sea, using environmental DNA ( e DNA) collected from the water column and surface sediment samples. Three primer sets were used, including two targeting universal eukaryotic regions (V4 and V9) and one specific to foraminifera (37F) of the 18S rDNA. The results showed that eukaryotic community composition varied depending on the type of samples and the time of sampling. We observed an increase in alpha diversity from the surface to the sediments, along with dynamic patterns in eukaryotic comunities in water samples. Numerous amplicon sequence variants (ASVs) could not be classified in any eukaryotic group at 90% similarity. Moreover, a significant proportion of ASVs could not be assigned to the genus or species level within the groups such as Cercozoa, parasitic Perkinsea, nematodes, fungi, and benthic foraminifera. Our study highlights the importance of this cryptic diversity and demonstrates the usefulness of metabarcoding as a tool for expanding our understanding of eukaryotic communities in this brackish environment.
随着气候变化和人类压力的加剧,提高我们对波罗的海等脆弱地区生物多样性和生态变化的理解变得越来越重要。在这项研究中,我们利用从波罗的海南部Gdańsk湾的水柱和表面沉积物样本中收集的环境DNA (e DNA)分析了微真核生物的多样性。使用了三组引物,其中两组针对18S rDNA的通用真核区(V4和V9),一组针对有孔虫区(37F)。结果表明,真核生物群落组成随样品类型和采样时间的不同而变化。我们观察到α多样性从地表到沉积物的增加,以及水样真核生物群落的动态模式。许多扩增子序列变异(asv)不能在任何真核生物类群中以90%的相似性分类。此外,相当大比例的asv不能被划分为属或种水平,如尾虫、寄生Perkinsea、线虫、真菌和底栖有孔虫。我们的研究强调了这种隐性多样性的重要性,并证明了元条形码作为一种工具的实用性,可以扩大我们对这种微咸环境中真核生物群落的理解。
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引用次数: 0
Community and functional shifts in sediment microbiomes driven by coral-algal proximity in the Northern Red Sea 在红海北部,珊瑚和藻类的接近导致沉积物微生物群落和功能的变化
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-15 DOI: 10.3389/fmars.2025.1725238
Amenah S. Alotiabi, Ulfat Jan, Y.M. Mahrous, Hanna Ghabban, Basmah M. Alharbi, Dikhnah Alshehri, Doha A. Albalawi, Abeer M. Alkhaibari, Abdulrahman Alasmari, Asma M. Alenzi, Fares Alromithy, Marfat Alatawy, Madeha O. I. Ghobashy, Rashid Mir
Coral–algy -55al interfaces are hotspots of biogeochemical activity, yet the structure and functional roles of sediment microbiomes associated with these habitats remain poorly resolved, particularly in the environmentally extreme northern Red Sea. This study characterizes how microbial community composition and functional potential vary with coral–algal proximity across three coastal sites (Alshreah, Saweehal, Marwan Cave). Shotgun metagenomic sequencing was performed on 18 sediment samples collected from two contrasting habitats at each site: (i) far-from-algae zones (≥500 m) and (ii) close-to-algae zones (≤10 m). Across all locations, eight dominant bacterial species structured the sediment microbiome, including Shewanella algae, Arenibacter algicola, Vibrio algicola, Zobellia alginiliquefaciens , and Prochlorococcus marinus . Species-level patterns showed strong spatial heterogeneity, with Marwan Cave consistently dominated by S. algae , while other sites exhibited clear habitat-dependent shifts. A. algicola and S. algae were more abundant near coral–algal habitats, whereas V. algicola was more prevalent in distant sediments. Further analysis indicated that both geographic location and algal proximity contributed to community structuring, with proximity effects most apparent at Alshreah and Saweehal. Functional profiles revealed clear habitat partitioning. Close-to-algae sediments were enriched in genes for chemotaxis, glycerol transport, and anaerobic metabolism, indicative of bacterial exploitation of algal exudates and low-oxygen microzones, while far-from-algae sediments showed higher representation of ABC transport systems, amino-acid metabolism, and stress-response pathways, reflecting nutrient-limited and more environmentally variable conditions. Overall, proximity to coral–algal assemblages emerged as a major ecological gradient shaping both the taxonomic and functional attributes of Red Sea sediment microbiomes, operating alongside strong site-level environmental differences. These findings highlight the biogeochemical influence of benthic algae and provide baseline insights into microbial processes that may reinforce coral–algal regime shifts in warming reef systems.
珊瑚-藻类-55 - al界面是生物地球化学活动的热点,但与这些栖息地相关的沉积物微生物群落的结构和功能作用仍然很不清楚,特别是在环境极端的红海北部。本研究描述了三个沿海地点(Alshreah, Saweehal, Marwan Cave)的微生物群落组成和功能潜力如何随着珊瑚-藻类的接近而变化。对从两个不同栖息地收集的18个沉积物样本进行了鸟枪宏基因组测序:(i)远离藻类区(≥500 m)和(ii)靠近藻类区(≤10 m)。在所有地点,8种优势细菌构成了沉积物微生物群,包括希瓦氏藻、藻绿Arenibacter algicola、藻绿弧菌(Vibrio algicola)、藻绿双球菌(zoobellia alginiliquefaciens)和海洋原绿球藻。物种水平格局表现出较强的空间异质性,马尔万洞始终以水藻为主,其他样地则表现出明显的生境依赖变化。藻单胞菌和藻单胞菌在靠近珊瑚-藻类生境的地方更为丰富,而藻单胞菌在较远的沉积物中更为普遍。进一步分析表明,地理位置和藻类邻近度对群落结构都有影响,其中Alshreah和Saweehal的邻近效应最为明显。功能剖面显示出明显的生境划分。靠近藻类的沉积物富含趋化性、甘油运输和厌氧代谢基因,表明细菌利用藻类分泌物和低氧微区,而远离藻类的沉积物则显示出更多的ABC运输系统、氨基酸代谢和应激反应途径,反映了营养有限和环境可变的条件。总体而言,与珊瑚-藻类组合的接近成为红海沉积物微生物组分类和功能属性的主要生态梯度,并与强烈的地点水平环境差异一起起作用。这些发现突出了底栖藻类的生物地球化学影响,并为可能在变暖的珊瑚礁系统中加强珊瑚-藻类制度转变的微生物过程提供了基线见解。
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引用次数: 0
Machine learning approaches to estimate Zostera marina carbon stocks across northern temperate oceans 利用机器学习方法估算北温带海洋中Zostera marina碳储量
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-15 DOI: 10.3389/fmars.2025.1714518
Nicola M. Wilson, Rudy Arthur, Emma Sullivan, Robert J. W. Brewin, Regan Early, Chris Laing
Restoring and conserving seagrass ecosystems are considered a climate solution due to their exceptional ability to store carbon in their sediments. However, restoration and financing efforts are held back by the inherent challenges of quantifying and monitoring carbon storage in sediments and the highly variable nature of seagrass carbon stocks globally. This research explores the application of machine learning (ML) models, using Earth Observation (EO) derived datasets, to estimate carbon stocks in the seagrass species Zostera marina , across its northern temperate range. A dataset of 176 Z. marina seagrass carbon stocks from 18 eco-regions was collated along with open-source data on 21 associated environmental variables, with the aim of developing a framework for estimating sediment carbon stocks and better understanding the variables that contribute to variability in storage. Ensemble decision trees were the best performing model able to predict nearly 40% of the variability in carbon stocks within a seagrass bed with human modification (e.g. population density and infrastructure), exposure, tidal range and wave height contributing most. Whilst the model performance reflects the complexity and uncertainty inherent in ecological systems, this research demonstrates the potential of ML approaches to estimate seagrass carbon stocks at a multi-regional scale and highlights key areas for future improvement.
恢复和保护海草生态系统被认为是一种气候解决方案,因为它们具有在沉积物中储存碳的特殊能力。然而,由于沉积物中碳储量的量化和监测以及全球海草碳储量的高度可变性,恢复和融资工作受到了阻碍。本研究探索了机器学习(ML)模型的应用,使用地球观测(EO)衍生的数据集,来估计北温带海草物种Zostera marina的碳储量。本文对来自18个生态区的176个Z. marina海草碳储量数据集以及21个相关环境变量的开源数据进行了整理,目的是建立一个估算沉积物碳储量的框架,并更好地理解导致储量变化的变量。集合决策树是表现最好的模型,能够预测海草床内近40%的碳储量变化,其中人类活动(如人口密度和基础设施)、暴露、潮差和波高贡献最大。虽然模型性能反映了生态系统固有的复杂性和不确定性,但本研究证明了机器学习方法在多区域尺度上估计海草碳储量的潜力,并强调了未来改进的关键领域。
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引用次数: 0
Trophic niche characterization of zooplankton and planktivorous fish: a comparative approach using stable isotopes in bulk and amino acid samples 浮游动物和浮游食性鱼类的营养生态位特征:在散装和氨基酸样品中使用稳定同位素的比较方法
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-15 DOI: 10.3389/fmars.2025.1718402
Nuria Mondéjar, Inés G. Viana, Rita García-Seoane, Jaime Otero, Antonio Bode
Quantification of the size and overlap of trophic niches of species with similar diets is crucial to understand food web dynamics. However, there are difficulties in determining all food resources used by each species over time and resolving competition suggested by niche overlap. In this study, we compare niche estimations in zooplankton and four species of planktivorous fish using stable carbon and nitrogen isotopes analyzed in bulk tissue samples with those using stable nitrogen isotopes in amino acids. Samples were collected in spring 2021 and 2022 in two areas of the northwestern Iberian shelf (Galicia) and southern Bay of Biscay (mar Cantábrico) with different influence of the seasonal upwelling. Estimations of trophic niches using both methods were complementary, revealing interspecific differences among fish species in the exploitation of food web resources. For instance, marked differences in the sources of carbon and nitrogen and low niche overlap indicated local feeding for zooplankton and some fish species (sardine and chub mackerel), while other species showed large variability in sources and niche overlap across zones (anchovy and mackerel). The apparent competition of fish species for resources suggested by these results can be explained by differences in their mobility, particularly in mackerel and anchovy, when the isotopic signal is not equilibrated with the new diet.
量化具有相似饮食的物种的营养生态位的大小和重叠对于理解食物网动态至关重要。然而,在确定每个物种随时间推移所使用的所有食物资源和解决生态位重叠引起的竞争方面存在困难。在这项研究中,我们比较了浮游动物和四种浮游食性鱼类的生态位估计,使用稳定的碳和氮同位素分析了散装组织样本,并使用稳定的氮同位素分析了氨基酸。研究人员于2021年和2022年春季在伊比利亚大陆架西北部(加利西亚)和比斯开湾南部(mar Cantábrico)两个地区采集了样本,受到季节性上升流的不同影响。两种方法估算的营养生态位具有互补性,揭示了鱼类利用食物网资源的种间差异。例如,碳氮来源的显著差异和低生态位重叠表明浮游动物和某些鱼类(沙丁鱼和鲐鱼)在当地取食,而其他物种(凤尾鱼和鲭鱼)在来源和生态位跨区域重叠方面表现出很大的变化。这些结果表明,鱼类对资源的明显竞争可以用它们的流动性差异来解释,特别是在鲭鱼和凤尾鱼中,当同位素信号与新的饮食不平衡时。
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引用次数: 0
Application of an enhanced deep forest model driven by meteorological dates in water quality prediction: a case study of the Minjiang River Estuary, Southeastern China 气象数据驱动的增强型深林模式在闽江河口水质预测中的应用——以闽江河口为例
IF 3.7 2区 生物学 Q1 MARINE & FRESHWATER BIOLOGY Pub Date : 2026-01-15 DOI: 10.3389/fmars.2025.1730509
Feng Cai, Yifan Liu, Sheng Lin, Weiliang Liao, Beihan Jiang
Introduction Estuaries are dynamic hydrodynamic–biogeochemical interfaces where riverine and marine processes converge, and their water quality is highly sensitive to meteorological variability and human disturbances modulated by tidal dynamics. Accurate prediction of water quality in estuarine environments is essential for maintaining ecosystem stability and reducing ecological risks. However, existing prediction approaches are often limited by incomplete monitoring data and insufficient capability for multi-indicator modeling, which constrains their accuracy and timeliness. Methods This study proposes an enhanced Deep Forest–XGBoost framework (EDF-XGB) driven by high-resolution meteorological inputs for multi-indicator water quality prediction. A global search whale optimization algorithm (GS-WOA) was integrated for adaptive parameter tuning, together with a hierarchical feature selection strategy based on feature importance and a dynamic weighting mechanism to account for sample difficulty. The proposed model was evaluated through a case study in the Min River Estuary. Results The results demonstrate that the EDF-XGB model achieves high predictive accuracy for relatively stable water quality indicators, including pH, total nitrogen (TN), and dissolved oxygen (DO), with R² values exceeding 0.90. For more variable indicators, such as ammonia nitrogen (NH₃-N) and the permanganate index (CODMn), the proposed model shows clear performance advantages over conventional approaches. SHapley Additive exPlanations (SHAP) analysis reveals that water temperature (WT), surface temperature (ST), and relative humidity (RH) are the dominant drivers of water quality variability. Discussion Regional generalization experiments indicate strong predictive performance in upstream non-tidal sections, whereas prediction accuracy decreases in downstream tidal reaches affected by complex hydrodynamic conditions and anthropogenic activities. This suggests that incorporating hydrodynamic descriptors and human activity indicators could further improve model performance. Overall, the proposed interpretable, data-driven, multi-indicator framework provides a scientific basis for real-time water quality prediction and ecological risk early warning in estuarine systems, supporting improved meteorological resilience and sustainable management of vulnerable coastal environments.
河口是河流和海洋过程交汇的动态水动力-生物地球化学界面,其水质对气象变率和潮汐动力调节的人为干扰高度敏感。河口环境水质的准确预测对维持生态系统稳定、降低生态风险具有重要意义。然而,现有的预测方法往往受到监测数据不完整和多指标建模能力不足的限制,从而制约了其准确性和及时性。方法采用高分辨率气象输入驱动的增强型Deep Forest-XGBoost框架(EDF-XGB)进行多指标水质预测。结合全局搜索鲸优化算法(GS-WOA)进行参数自适应调整,结合基于特征重要性的分层特征选择策略和考虑样本难度的动态加权机制。以闽江河口为例,对该模型进行了验证。结果EDF-XGB模型对pH、总氮(TN)、溶解氧(DO)等相对稳定的水质指标具有较高的预测精度,其R²值均大于0.90。对于更多可变的指标,如氨氮(NH₃-N)和高锰酸盐指数(CODMn),所提出的模型比传统方法显示出明显的性能优势。SHapley加性解释(SHAP)分析表明,水温(WT)、地表温度(ST)和相对湿度(RH)是水质变率的主要驱动因素。区域概化试验表明,上游非潮段预测精度较高,而下游潮段受复杂水动力条件和人为活动影响,预测精度降低。这表明,结合水动力描述符和人类活动指标可以进一步提高模型的性能。总体而言,提出的可解释、数据驱动、多指标框架为河口系统的实时水质预测和生态风险预警提供了科学依据,支持提高沿海脆弱环境的气象复原力和可持续管理。
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Frontiers in Marine Science
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