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The role of 3D preclinical models in the Era of precision medicine: A bladder cancer perspective 3D临床前模型在精准医学时代的作用:一个膀胱癌的视角
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-10 Epub Date: 2025-11-25 DOI: 10.1016/j.gene.2025.149919
Carlotta Frascolla , Riccardo Mastroianni , Giuseppe Simone , Giovanni Blandino
Bladder cancer (BCa) remains one of the most challenging malignancies in oncology, driven by deep molecular heterogeneity, dynamic tumor evolution and complex tumor–microenvironment interactions. Despite advances in molecular characterization and the introduction of new treatments, translating biological knowledge into meaningful clinical benefits remains a major bottleneck. In recent years, next-generation 3D preclinical models have emerged as essential tools to recapitulate BCa complexity, offering new opportunities to investigate tumor biology and support the development of personalized treatment strategies. This review provides an overview of available 3D models for BCa, discusses their application and highlights their growing integration into clinical trials to guide real-time therapeutic decisions.
膀胱癌(BCa)仍然是肿瘤学中最具挑战性的恶性肿瘤之一,受深层分子异质性、动态肿瘤进化和复杂的肿瘤-微环境相互作用的驱动。尽管在分子表征和引入新的治疗方法方面取得了进展,但将生物学知识转化为有意义的临床效益仍然是一个主要瓶颈。近年来,下一代3D临床前模型已经成为概括BCa复杂性的重要工具,为研究肿瘤生物学和支持个性化治疗策略的发展提供了新的机会。本综述概述了BCa的可用3D模型,讨论了它们的应用,并强调了它们越来越多地集成到临床试验中,以指导实时治疗决策。
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引用次数: 0
A de novo INSR variant in Type A insulin resistance syndrome: familial investigation and genetic implications A型胰岛素抵抗综合征的新生INSR变异:家族调查和遗传意义
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-10 Epub Date: 2025-12-06 DOI: 10.1016/j.gene.2025.149934
Xin Lin , Zi-yan Xu , Li-jun Xie , Juan Zhu , Hong-ping Yu , Ruo-li Wang , Yi-jia Luo , Jing Zou , Jian-hui Zhang , Qian Chen , Peng-fei Wang , Dan-dan Ruan , Yan-feng Zhou , Li Chen , Fang-meng Huang , Mei-zhu Gao , Li Zhang , Yun-fei Li , Zhu-ting Fang , Jue Wang , Jie-wei Luo
Type A insulin resistance syndrome (TAIRS) is a rare autosomal dominant disorder associated with variants in the Insulin Receptor (INSR) gene. It is characterized by insulin resistance, hyperandrogenism, and acanthosis nigricans. The severity of the condition may be influenced by homozygosity or heterozygosity, with some female patients being misdiagnosed with polycystic ovary syndrome (PCOS). A 13-year-old female proband from a family was identified with hyperinsulinemia, hyperandrogenism, acanthosis nigricans, hirsutism, acne, oligomenorrhea, and masculinization. Exome sequencing and Sanger sequencing confirmed that the proband was a carrier of the INSR (NM_000208.2): c.3734 T > A(p.V1245E) variant. This variant is not listed in the Human Gene Mutation Database (HGMD) or ClinVar. The novel variant was predicted to be deleterious by the bioinformatic tools SIFT, MutationTaster, and Condel. According to the American College of Medical Genetics and Genomics (ACMG) criteria, it was evaluated as PM6, PM2_Supporting, and PP3, and classified as uncertain significance. The variant was not detected in the proband’s parents or other family members, all of whom lacked the associated clinical phenotypes. The p.V1245E variant was found to be a de novo variant. SWISS-MODEL analysis suggested that the p.V1245E variant induces structural changes in the three-dimensional configuration of the INSR protein, potentially impairing its normal function. RT-qPCR revealed a significant reduction in INSR mRNA expression in the proband. In a 293 T cell model transfected with lentivirus carrying the p.V1245E variant, both Western blotting and RT-qPCR demonstrated decreased INSR mRNA and protein expression, while immunofluorescence showed reduced INSR protein levels with altered localization. Therefore, the ACMG evaluation (PS2, PS3, PM2_Supporting, PP3) was further upgraded to pathogenic. In conclusion, this de novo variant represents the pathogenic variant responsible for TAIRS in this family, expanding the variant spectrum of the INSR gene.
A型胰岛素抵抗综合征(TAIRS)是一种罕见的常染色体显性遗传病,与胰岛素受体(INSR)基因变异有关。它的特点是胰岛素抵抗、雄激素过多和黑棘皮病。多囊卵巢综合征的严重程度可能受纯合性或杂合性的影响,一些女性患者被误诊为多囊卵巢综合征(PCOS)。来自一个家庭的13岁女性先证被鉴定为高胰岛素血症、高雄激素症、黑棘皮病、多毛症、痤疮、少月经和男性化。外显子组测序和Sanger测序证实先证者为INSR (NM_000208.2)的携带者:c.3734 T > a (p。V1245E)变异。这种变异没有在人类基因突变数据库(HGMD)或ClinVar中列出。通过生物信息学工具SIFT、MutationTaster和Condel预测该新变异是有害的。根据美国医学遗传学和基因组学学会(ACMG)的标准,评估为PM6、pm2_support和PP3,并归类为不确定意义。该变异未在先证者的父母或其他家庭成员中检测到,他们都缺乏相关的临床表型。p.V1245E改型被发现是一个全新的改型。SWISS-MODEL分析表明,p.V1245E变异诱导了INSR蛋白三维构型的结构变化,潜在地损害了其正常功能。RT-qPCR显示先证者中INSR mRNA表达显著降低。在携带p.V1245E变异体的慢病毒转染293 T细胞模型中,Western blotting和RT-qPCR均显示INSR mRNA和蛋白表达降低,而免疫荧光显示INSR蛋白水平降低,定位改变。因此,ACMG评价(PS2、PS3、pm2_support、PP3)进一步升级为致病性。总之,这一新生变异代表了该家族中导致TAIRS的致病变异,扩大了INSR基因的变异谱。
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引用次数: 0
Downregulation of Syncytin-2 expression in preeclamptic placentas is associated with DNA hypermethylation of the downstream CpG-rich region Syncytin-2在子痫前期胎盘中的表达下调与下游富含cpg区域的DNA超甲基化有关。
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-10 Epub Date: 2025-12-03 DOI: 10.1016/j.gene.2025.149932
Chun Feng , Teng Zhang , Yuan Li , Yuyun Long , Qian Meng , Shi-Wen Jiang
Syncytin-2 is an endogenous retroviral envelope protein constitutively expressed in human placental trophoblasts. As a membrane glycoprotein, Syncytin-2 together with Syncytin-1 mediates the fusion of mononucleated cytotrophoblasts to form multinucleated syncytiotrophoblasts. Syncytiotrophoblasts constitute the fetal-maternal interface important for fetal-maternal exchange, barrier and endocrine functions of the placenta. Besides the fusogenic function, Syncytin-2 also possesses an immunosuppressive activity. In this study, the results of quantitative PCR indicated that Syncytin-2 expression was downregulated in third-trimester preeclamptic placentas, which is consistent with the result of previous studies. Importantly, the results of Combined Bisulfite Restriction Assay (COBRA) suggested hypermethylation of the downstream CpG-rich region, but not the promoter/exon1/intron1 and exon2 CpG- rich regions of SYN-2 gene in third-trimester preeclamptic placentas. Subsequent bisulfite conversion and PCR amplification, cloning and sequencing of the downstream CpG- rich region confirmed hypermethylation of the 4 CpGs in this region in preeclamptic placentas. Moreover, treatment of human choriocarcinoma BeWo cells with DNMT inhibitor ADC (5-aza-deoxycytidine) resulted in a dose-responsive demethylation of the downstream CpG-rich region and an increased SYN-2 mRNA level. Thus, the hypermethylation of the downstream CpG-rich region closely correlated with the downregulation of Syncytin-2 expression in preeclamptic placentas. These new findings underscore the significance of epigenetic alterations in preeclamptic placentas, and facilitate a better understanding on the pathological mechanism of preeclampsia.
Syncytin-2是一种内源性逆转录病毒包膜蛋白,在人胎盘滋养细胞中组成性表达。Syncytin-2作为一种膜糖蛋白,与Syncytin-1一起介导单核细胞滋养细胞融合形成多核细胞滋养细胞。合体滋养细胞是母胎交换、屏障和胎盘内分泌功能的重要界面。除了促融合功能外,Syncytin-2还具有免疫抑制活性。本研究中,定量PCR结果显示Syncytin-2在妊娠晚期子痫前期胎盘中表达下调,这与以往研究结果一致。重要的是,联合亚硫酸氢盐限制性测定(COBRA)的结果表明,在妊娠晚期子痫前期胎盘中,SYN-2基因的下游富含CpG区域发生了高甲基化,但启动子/外显子/内含子1和外显子2富含CpG区域并未发生高甲基化。随后亚硫酸转化、PCR扩增、下游富含CpG区域的克隆和测序证实了子痫前期胎盘中该区域的4个CpGs的高甲基化。此外,用DNMT抑制剂ADC(5-偶氮-脱氧胞苷)治疗人绒毛膜癌BeWo细胞导致下游富含cpg区域的剂量反应性去甲基化和SYN-2 mRNA水平升高。由此可见,子痫前期胎盘中下游富含cpg区域的高甲基化与Syncytin-2表达下调密切相关。这些新发现强调了子痫前期胎盘表观遗传改变的重要性,并有助于更好地了解子痫前期的病理机制。
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引用次数: 0
ContigPolishing: A User-Friendly Java GUI for contig extension and refinement in prokaryotic genomes ContigPolishing:一个用户友好的Java GUI,用于原核生物基因组的contig扩展和细化。
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-10 Epub Date: 2025-11-13 DOI: 10.1016/j.gene.2025.149893
Rosyely da Silva Oliveira , Nilson César Oliveira Alves Filho , Walter de Barros Gomes Netto , Denis de Castro Silva , Mônica Silva de Oliveira , Ana Carolina Favacho Miranda de Oliveira , Rafael Azevedo Baraúna , Diego Assis das Graças , Artur Silva , Adonney Allan de Oliveira Veras
To determine the gene content of an organism, the reads generated by the sequencing process must be assembled using an assembly strategy, either by reference or de novo. However, this process often results in multiple sequences called contigs, which, after the sorting steps, are grouped into scaffolds. The completion stage aims to obtain a single genomic sequence, called a complete genome, which is not a trivial task. Various analytical strategies have been developed to help in this process, many of which have been implemented in computer tools to obtain complete genomes or as close to this as possible, the so-called drafts. The manuscript presents ContigPolishing, a computational tool with a simple and intuitive graphical interface, developed to improve the assembly of prokaryotic genomes, such as bacteria and metagenomes. Despite existing software, there is a gap for solutions that combine simplicity and robustness. ContigPolishing addresses this need, featuring an integrated database that allows processing to be resumed at any time. The tool was validated with 90 NCBI datasets from genera such as Escherichia coli, Corynebacterium, and Nocardia, as well as raw reads from the SRA database to simulate real-world situations. The results showed improvement in the contiguity of the assemblies, with an increase in N50 and improvement in L50, and a reduction in the number of contigs, by extending the contigs using the similarity between their flanks. In some cases, the software was able to elevate the status of genomes from draft to complete, proving its efficiency. ContigPolishing is available at: https://github.com/allanverasce/contigpolishing.
为了确定生物体的基因含量,测序过程产生的reads必须使用一种组装策略进行组装,要么是参照,要么是从头组装。然而,这个过程通常会产生称为contigs的多个序列,这些序列在排序步骤之后被分组为支架。完成阶段的目的是获得一个单一的基因组序列,称为完整的基因组,这不是一项微不足道的任务。已经开发了各种分析策略来帮助这个过程,其中许多已经在计算机工具中实现,以获得完整的基因组或尽可能接近于此,即所谓的草稿。该手稿介绍了ContigPolishing,这是一个具有简单直观图形界面的计算工具,用于改进原核生物基因组(如细菌和宏基因组)的组装。尽管有现有的软件,但结合了简单性和健壮性的解决方案仍然存在差距。ContigPolishing解决了这一需求,其特点是集成了数据库,允许在任何时候恢复处理。该工具使用90个NCBI数据集进行验证,这些数据集来自大肠杆菌、棒状杆菌和诺卡菌属,以及SRA数据库的原始读数,以模拟现实世界的情况。结果表明,通过利用其侧翼之间的相似性扩展contigs,提高了N50和L50的连续性,减少了contigs的数量。在某些情况下,该软件能够将基因组的状态从草稿提升到完成,证明了它的效率。ContigPolishing网站:https://github.com/allanverasce/contigpolishing。
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引用次数: 0
GGH intronic variant rs3780130 is associated with methotrexate levels in children with brain tumors GGH内含子变异rs3780130与脑肿瘤患儿甲氨蝶呤水平相关
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-10 Epub Date: 2025-11-29 DOI: 10.1016/j.gene.2025.149929
Si-han Liu , Xiao-yan Kong , Miao Li , Shu-mei Wang

Background

Pediatric brain tumors (PBTs) are the leading type of solid tumors in children, profoundly affecting both survival rates and quality of life. Methotrexate (MTX) is an essential chemotherapy drug for treating these tumors; however, its efficacy and toxicity vary among patients due to genetic factors.

Objective

This study examined the impact of the intronic rs3780130 polymorphism in the gamma-glutamyl hydrolase (GGH) gene on MTX concentrations and related toxicities in patients with PBTs.

Methods

The GGH rs3780130 T > A polymorphism was genotyped using the Sequenom MassARRAY iPLEX platform in a cohort of 73 PBT patients.

Results

We found that children with the AA genotype had significantly higher MTX concentrations compared to those with TT and TA genotypes (P < 0.05). Additionally, the AA genotype was significantly associated with a higher incidence of hepatotoxicity relative to the TT genotype (P < 0.05). It showed a significantly lower occurrence of gastrointestinal toxicities when compared to the TA genotype (P < 0.05). Bioinformatics analysis revealed that the rs3780130 polymorphism had a significant effect on GGH expression across various tissues, suggesting a potential mechanism by which this variant modulated MTX metabolism.

Conclusion

Our findings highlight the importance of GGH polymorphisms in personalizing MTX therapy for PBT patients and emphasize the necessity for further research to explore the clinical implications of GGH genotypes in larger cohorts, ultimately aiming for more precise therapeutic strategies.
背景:儿童脑肿瘤(PBTs)是儿童实体肿瘤的主要类型,深刻影响着儿童的生存率和生活质量。甲氨蝶呤(MTX)是治疗这些肿瘤的重要化疗药物;然而,由于遗传因素,其疗效和毒性因患者而异。目的:研究γ -谷氨酰水解酶(GGH)基因rs3780130内含子多态性对pbt患者MTX浓度及相关毒性的影响。方法:使用Sequenom MassARRAY iPLEX平台对73例PBT患者的GGH rs3780130 T > A多态性进行基因分型。结果:我们发现AA基因型儿童的MTX浓度明显高于TT和TA基因型儿童(P )。结论:我们的研究结果强调了GGH多态性对PBT患者个性化MTX治疗的重要性,并强调了进一步研究的必要性,以在更大的队列中探索GGH基因型的临床意义,最终旨在制定更精确的治疗策略。
{"title":"GGH intronic variant rs3780130 is associated with methotrexate levels in children with brain tumors","authors":"Si-han Liu ,&nbsp;Xiao-yan Kong ,&nbsp;Miao Li ,&nbsp;Shu-mei Wang","doi":"10.1016/j.gene.2025.149929","DOIUrl":"10.1016/j.gene.2025.149929","url":null,"abstract":"<div><h3>Background</h3><div>Pediatric brain tumors (PBTs) are the leading type of solid tumors in children, profoundly affecting both survival rates and quality of life. Methotrexate (MTX) is an essential chemotherapy drug for treating these tumors; however, its efficacy and toxicity vary among patients due to genetic factors.</div></div><div><h3>Objective</h3><div>This study examined the impact of the intronic rs3780130 polymorphism in the gamma-glutamyl hydrolase (<em>GGH</em>) gene on MTX concentrations and related toxicities in patients with PBTs.</div></div><div><h3>Methods</h3><div>The <em>GGH</em> rs3780130 T &gt; A polymorphism was genotyped using the Sequenom MassARRAY iPLEX platform in a cohort of 73 PBT patients.</div></div><div><h3>Results</h3><div>We found that children with the AA genotype had significantly higher MTX concentrations compared to those with TT and TA genotypes (<em>P</em> &lt; 0.05). Additionally, the AA genotype was significantly associated with a higher incidence of hepatotoxicity relative to the TT genotype (<em>P</em> &lt; 0.05). It showed a significantly lower occurrence of gastrointestinal toxicities when compared to the TA genotype (<em>P</em> &lt; 0.05). Bioinformatics analysis revealed that the rs3780130 polymorphism had a significant effect on <em>GGH</em> expression across various tissues, suggesting a potential mechanism by which this variant modulated MTX metabolism.</div></div><div><h3>Conclusion</h3><div>Our findings highlight the importance of <em>GGH</em> polymorphisms in personalizing MTX therapy for PBT patients and emphasize the necessity for further research to explore the clinical implications of <em>GGH</em> genotypes in larger cohorts, ultimately aiming for more precise therapeutic strategies.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":"979 ","pages":"Article 149929"},"PeriodicalIF":2.4,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145653732","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Heredity and personality: A review of concepts, methods, and evidence 遗传和人格:概念、方法和证据的回顾。
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-10 Epub Date: 2025-11-23 DOI: 10.1016/j.gene.2025.149916
Marcelo Arancibia , Jefferson Rojas , M. Leonor Bustamante
Advances in genetics and genomics have transformed our understanding of personality. The observation that personality traits run in families has prompted extensive study into their heritability and underlying genetic architecture. However, there is a significant discrepancy between psychiatric classifications of personality disorders and genomic findings, suggesting a need to reorient these classifications toward a more dimensional, biologically informed perspective. This article reviews key genetic and genomic findings in personality, focusing on the “Big Five” model, which has proven consistency with genomic research. Twin studies estimate heritability accounts for about 40–50 % of personality traits, while the rest of phenotypic variation is explained by the non-shared environment, which influence personality through epigenetic changes. Genome-wide association studies (GWAS) have identified numerous genetic variants on nearly all chromosomes that influence personality traits, particularly neuroticism. These variants are involved in biological pathways such as neurogenesis and neuronal differentiation. GWAS have also revealed significant genetic correlations between personality traits and major psychiatric disorders, supporting a biological continuum between them. This supports the hypothesis which states that a typical behavioral trait is associated with many genetic variants, each contributing a very small effect. Future research should incorporate epigenetic evidence, study genetic interactions, and expand the diversity of study populations beyond European ancestry to improve the generalizability of findings.
遗传学和基因组学的进步已经改变了我们对人格的理解。观察到性格特征在家族中遗传,促使人们对其可遗传性和潜在的遗传结构进行了广泛的研究。然而,人格障碍的精神病学分类与基因组研究结果之间存在显著差异,这表明需要将这些分类重新定位于更多维的、生物学知情的角度。这篇文章回顾了人格的主要遗传和基因组发现,重点是“大五”模型,它已被证明与基因组研究一致。双胞胎研究估计遗传力约占性格的40-50%,而其余的表型变异是由非共享环境解释的,非共享环境通过表观遗传变化影响性格。全基因组关联研究(GWAS)已经在几乎所有的染色体上发现了许多影响人格特征的遗传变异,特别是神经质。这些变异涉及神经发生和神经元分化等生物学途径。GWAS还揭示了人格特征和主要精神疾病之间的显著遗传相关性,支持了它们之间的生物学连续性。这支持了一个假设,即一个典型的行为特征与许多基因变异有关,每个基因变异的影响都很小。未来的研究应纳入表观遗传学证据,研究遗传相互作用,并扩大欧洲血统以外研究人群的多样性,以提高研究结果的普遍性。
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引用次数: 0
Characterization of the gut microbiota in patients with stage III colorectal cancer: A case-control study III期结直肠癌患者肠道微生物群的特征:一项病例对照研究
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-05 Epub Date: 2025-11-19 DOI: 10.1016/j.gene.2025.149913
Mahamane T. Diakité , Shan Sun , Anou M. Somboro , Brehima Diakité , Amadou Koné , Yaya Kassogué , Djeneba Fofana , Saidou Balam , Cheick B Traoré , Aminata Maiga , Bakarou Kamaté , Djibril Ba , Modibo Diarra , Soungou Boré , Almoustapha I. Maiga , Qi Dai , Drew Robert Nannini , Jane Holl , Robert Murphy , Lifang Hou , Mamoudou Maiga

Aim

To conduct a case-control study (pilot study) in Africa (Mali) in comparing the gut microbiota of patients with stage III colorectal cancer (CRC) using next-generation sequencing.

Methods

Shotgun sequencing was performed to characterize participants’ fecal microbiota using Illumina’s HiSeq platform. This case-control study involved newly diagnosed CRC patients (n = 23) prior to any treatment initiation, and unrelated healthy controls (n = 24) to elucidate their microbial diversity and relative abundance.

Results

The findings revealed that the gut microbiota in CRC and in healthy were significantly distinctive according to the PERMANOVA test (R2 = 0.132, P = 0.001), and the alpha-diversity was significantly lower in CRC. Beta-diversity, based on principal coordinate analysis, showed a distinct taxonomy between the CRC and the healthy.
Levels of Pseudomonadota, Escherichia, Citrobacter freundii, Klebsiella sp. LTGPAF-6F, Escherichia albertii, Escherichia coli, Caudovirales, Apicomplexa, and Verrucomicrobiota populations were significantly elevated in CRC. The major metabolic pathways with higher relative abundance levels found in CRC compared to healthy were related to HEMESYN2-PWY: heme biosynthesis II (anaerobic), PWY-5154:L-arginine biosynthesis III (via N-acetyl-L-citrulline), FUC-RHAMCAT-PWY: superpathway of fucose and rhamnose degradation, ECASYN-PWY: enterobacterial common antigen biosynthesis, ENTBACSYN-PWY: enterobactin biosynthesis, and AEROBACTINSYN-PWY: aerobactin biosynthesis.

Conclusion

Distinct gut microbiome profiles between healthy and CRC were observed. In particular, the findings showed a significant reduction in microbial diversity in stage III CRC. This study provides initial metagenomic data on Malian patients with CRC. It will be used to create a larger cohort to better understand the relationship between CRC and the gut microbiota in the Malian CRC population.
目的:在非洲(马里)开展一项病例对照研究(试点研究),利用下一代测序技术比较III期结直肠癌(CRC)患者的肠道微生物群。方法:使用Illumina的HiSeq平台进行鸟枪测序以表征参与者的粪便微生物群。本病例对照研究纳入任何治疗开始前新诊断的CRC患者(n = 23)和不相关的健康对照(n = 24),以阐明其微生物多样性和相对丰度。结果:结果显示,根据PERMANOVA检验,结直肠癌患者肠道微生物群与健康人群存在显著差异(R2 = 0.132,P = 0.001),且α -多样性在结直肠癌患者中显著降低。基于主坐标分析的β -多样性显示结直肠癌和健康人之间有明显的分类。结直肠癌患者中假单胞菌、埃希氏菌、弗氏柠檬酸杆菌、克雷伯氏菌LTGPAF-6F、阿尔伯氏菌、大肠杆菌、Caudovirales、顶复菌和Verrucomicrobiota种群水平显著升高。结直肠癌中相对丰度较高的主要代谢途径与HEMESYN2-PWY:血红素生物合成II(厌氧)、PWY-5154: l-精氨酸生物合成III(通过n -乙酰- l-瓜氨酸)、fu - rhamat - pwy:聚焦和鼠李糖降解超途径、ecsyn - pwy:肠杆菌共同抗原生物合成、ENTBACSYN-PWY:肠actin生物合成和AEROBACTINSYN-PWY:有氧肌动蛋白生物合成有关。结论:观察到健康人与结直肠癌患者肠道微生物组的差异。特别是,研究结果显示III期CRC中微生物多样性显著减少。这项研究提供了马里CRC患者的初始宏基因组数据。它将用于创建一个更大的队列,以更好地了解马里结直肠癌人群中结直肠癌与肠道微生物群之间的关系。
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引用次数: 0
Double minutes: exploring the formation and oncogenic roles in cancer progression 双分钟:探索癌症进展中的形成和致癌作用。
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-05 Epub Date: 2025-11-08 DOI: 10.1016/j.gene.2025.149879
Mahjabin Sanam, Chowdhury Fatema Tuz Zohra Hossain, Jahin Fairuj Oishi, Reasat Tarannum, Nusrat Zahan Rouf
ecDNA is a circular DNA extensively present in human cancers, particularly advanced tumors, but rarely detected in healthy cells. Previously, they were named “minute chromatin bodies,” which eventually changed into “Double minutes (DMs)” as they exist in pairs. Due to their structural and epigenetic modifications, they confer specific advantages, helping them to survive and persist within cells. Rapid amplification of drug-resistant genes or oncogenes, increased chromatin accessibility, and non-Mendelian inheritance all contribute significantly to tumor adaptability, aggressiveness, and resistance to drug or chemotherapy treatment. Thus, this review paper aims to discuss DMs’ formation, mechanism, and maintenance, examining the tools used to detect them and investigating the commonly observed oncogenes in different cancer types. Lastly, the therapeutic approaches applied over the years have been to reduce or eliminate DMs in tumor cells.
ecDNA是一种环状DNA,广泛存在于人类癌症,特别是晚期肿瘤中,但很少在健康细胞中检测到。以前,它们被命名为“分钟染色质体”,最终变成了“双分钟(dm)”,因为它们成对存在。由于它们的结构和表观遗传修饰,它们赋予了特定的优势,帮助它们在细胞内存活和持续存在。耐药基因或癌基因的快速扩增、染色质可及性的增加和非孟德尔遗传都对肿瘤的适应性、侵袭性和对药物或化疗的耐药性有重要作用。因此,本文旨在讨论DMs的形成、机制和维持,研究用于检测DMs的工具,并研究不同类型癌症中常见的致癌基因。最后,多年来应用的治疗方法是减少或消除肿瘤细胞中的DMs。
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引用次数: 0
Editors' Corner: Blubber thickness in cetaceans 编者按:鲸类动物的脂肪厚度。
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-05 Epub Date: 2025-11-23 DOI: 10.1016/j.gene.2025.149903
Adelino V.M. Canário
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引用次数: 0
IL17 genetic variants impact the response and safety of TNFi treatment in rheumatoid arthritis patients from Bahia, Brazil IL17基因变异影响TNFi治疗在巴西巴伊亚的类风湿关节炎患者中的疗效和安全性
IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2026-02-05 Epub Date: 2025-11-20 DOI: 10.1016/j.gene.2025.149910
Lilian de Sá Garcia Landeiro , Pedro Augusto Silva dos Santos Rodrigues , Almirane Lima de Oliveira , Katarina Mattos Brandão , Laryssa Cardoso Calmon , João Victor Andrade Cruz , Mailane dos Anjos Silva , Bruna Ramos Tosta , Ingrid de Marins de Almeida , João Locke Ferreira de Araújo , Thamara Miranda Barbosa dos Santos , Milca de Jesus Silva , Gabriela Pimentel Pinheiro das Chagas , Álvaro Augusto Souza da Cruz Filho , Camila Alexandrina Viana de Figueirêdo , Pablo de Moura Santos , Ryan dos Santos Costa

Objective

Rheumatoid arthritis (RA) is a chronic inflammatory disease that can lead to progressive disability. TNF inhibitors (TNFi) have shown promise in improving disease progression and prognosis; however, only 60% to 70% of patients respond well. Genetic variations have been linked to this therapeutic failure. Genetic variants in the IL17 gene are associated with TNFi therapy responses and RA susceptibility, but few studies have explored this in the Brazilian population. This study assesses variants in the IL-17 pathway (rs763780, rs2275913, rs3819024) in RA patients undergoing TNFi treatment in Salvador, BA. Methods: A total of 497 individuals (294 RA patients, 203 healthy controls) were included. Plasma levels of IL-17, IL-1β, TNF, and other cytokines were measured in a subpopulation. Meta-analysis of published studies was conducted to consolidate associations between IL and 17 variants and RA susceptibility. Results: No significant associations were found between SNVs and RA susceptibility in the cohort, while the meta-analysis revealed protective and risk associations. The rs3819024-G allele was associated with improved TNFi response, particularly in infliximab users, whereas rs2275913-AA carriers had higher risk of treatment.
目的类风湿性关节炎(RA)是一种慢性炎症性疾病,可导致进行性残疾。TNF抑制剂(TNFi)已显示出改善疾病进展和预后的希望;然而,只有60%至70%的患者反应良好。遗传变异与这种治疗失败有关。IL17基因的遗传变异与TNFi治疗反应和RA易感性相关,但很少有研究在巴西人群中探讨这一点。本研究评估了萨尔瓦多,BA接受TNFi治疗的RA患者IL-17通路(rs763780, rs2275913, rs3819024)的变异。方法:共纳入497例(RA患者294例,健康对照203例)。在一个亚群中测量IL-17、IL-1β、TNF和其他细胞因子的血浆水平。对已发表的研究进行荟萃分析,以巩固IL和17种变体与RA易感性之间的关系。结果:在队列中,SNVs与RA易感性之间未发现显著关联,而荟萃分析显示了保护性和风险相关性。rs3819024-G等位基因与改善的TNFi反应相关,特别是在英夫利昔单抗使用者中,而rs2275913-AA携带者有更高的治疗风险。
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