首页 > 最新文献

Geographical Analysis最新文献

英文 中文
R Packages for Analyzing Spatial Data: A Comparative Case Study with Areal Data 分析空间数据的R包:与区域数据的比较案例研究
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2022-02-06 DOI: 10.1111/gean.12319
Roger Bivand

The count of open source software packages hosted by the Comprehensive R Archive Network (CRAN) using key spatial data handling packages has now passed 1,000. Providing a comprehensive review of these packages is beyond the scope of an article. Consequently, this review takes the form of a comparative case study, reproducing some of the approach and workflow of a spatial analysis of a data set including almost all the census tracts in the coterminous United States. The case study moves from visualization and the construction of a spatial weights matrix, to exploratory spatial data analysis and spatial regression. For comparison, implementations of the same steps in PySAL and GeoDa are interwoven, and points of convergence and divergence noted and discussed. Conclusions are drawn about the usefulness of open source software, the significance of sharing contributions both in software implementation but also more broadly in reproducible research, and in opportunities for exchanging ideas and solutions with other research domains.

由综合R档案网络(CRAN)托管的使用关键空间数据处理包的开源软件包的数量现已超过1000个。提供对这些包的全面回顾超出了本文的范围。因此,这次审查采取了比较个案研究的形式,再现了对一组数据进行空间分析的一些方法和工作流程,其中包括几乎所有毗邻美国的人口普查区。案例研究从可视化和空间权重矩阵的构建,到探索性的空间数据分析和空间回归。为了进行比较,在PySAL和GeoDa中对相同步骤的实现进行了交织,并注意和讨论了收敛点和分歧点。结论是关于开源软件的有用性,在软件实现以及更广泛的可重复研究中分享贡献的重要性,以及与其他研究领域交换想法和解决方案的机会。
{"title":"R Packages for Analyzing Spatial Data: A Comparative Case Study with Areal Data","authors":"Roger Bivand","doi":"10.1111/gean.12319","DOIUrl":"10.1111/gean.12319","url":null,"abstract":"<p>The count of open source software packages hosted by the Comprehensive R Archive Network (CRAN) using key spatial data handling packages has now passed 1,000. Providing a comprehensive review of these packages is beyond the scope of an article. Consequently, this review takes the form of a comparative case study, reproducing some of the approach and workflow of a spatial analysis of a data set including almost all the census tracts in the coterminous United States. The case study moves from visualization and the construction of a spatial weights matrix, to exploratory spatial data analysis and spatial regression. For comparison, implementations of the same steps in PySAL and GeoDa are interwoven, and points of convergence and divergence noted and discussed. Conclusions are drawn about the usefulness of open source software, the significance of sharing contributions both in software implementation but also more broadly in reproducible research, and in opportunities for exchanging ideas and solutions with other research domains.</p>","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"54 3","pages":"488-518"},"PeriodicalIF":3.6,"publicationDate":"2022-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/gean.12319","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48945634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 52
A deeper look at impacts in spatial Durbin model with sphet 用sphet对空间Durbin模型的影响进行更深入的研究
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2022-01-10 DOI: 10.1111/gean.12318
Gianfranco Piras, Paolo Postiglione

This article focuses on the estimation of the spatial Durbin model and associated relative impacts implemented in the R library sphet. Specifically, the current version of the library offers two ways of performing inference: one based on drawing samples from a multivariate normal distribution, and the other based on an analytical formula. The performance of these two methods is compared using an extensive Monte Carlo experiment. As an illustration of the kind of analysis that can be performed with sphet, the article also presents an empirical application looking at economic growth of Italian provinces.

本文的重点是对空间Durbin模型的估计以及在R库环境中实现的相关影响。具体来说,该库的当前版本提供了两种执行推理的方法:一种基于从多变量正态分布中提取样本,另一种基于分析公式。通过大量的蒙特卡罗实验,比较了这两种方法的性能。作为一种可以用sphet进行的分析的例证,文章还提出了一个观察意大利各省经济增长的实证应用。
{"title":"A deeper look at impacts in spatial Durbin model with sphet","authors":"Gianfranco Piras,&nbsp;Paolo Postiglione","doi":"10.1111/gean.12318","DOIUrl":"10.1111/gean.12318","url":null,"abstract":"<p>This article focuses on the estimation of the spatial Durbin model and associated relative impacts implemented in the R library <b>sphet</b>. Specifically, the current version of the library offers two ways of performing inference: one based on drawing samples from a multivariate normal distribution, and the other based on an analytical formula. The performance of these two methods is compared using an extensive Monte Carlo experiment. As an illustration of the kind of analysis that can be performed with <b>sphet</b>, the article also presents an empirical application looking at economic growth of Italian provinces.</p>","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"54 3","pages":"664-684"},"PeriodicalIF":3.6,"publicationDate":"2022-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44665605","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
A Route Map for Successful Applications of Geographically Weighted Regression 地理加权回归成功应用的路线图
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2022-01-09 DOI: 10.1111/gean.12316
Alexis Comber, Christopher Brunsdon, Martin Charlton, Guanpeng Dong, Richard Harris, Binbin Lu, Yihe Lü, Daisuke Murakami, Tomoki Nakaya, Yunqiang Wang, Paul Harris

Geographically Weighted Regression (GWR) is increasingly used in spatial analyses of social and environmental data. It allows spatial heterogeneities in processes and relationships to be investigated through a series of local regression models rather than a single global one. Standard GWR assumes that relationships between the response and predictor variables operate at the same spatial scale, which is frequently not the case. To address this, several GWR variants have been proposed. This paper describes a route map to decide whether to use a GWR model or not, and if so which of three core variants to apply: a standard GWR, a mixed GWR or a multiscale GWR (MS-GWR). The route map comprises 3 primary steps that should always be undertaken: (1) a basic linear regression, (2) a MS-GWR, and (3) investigations of the results of these in order to decide whether to use a GWR approach, and if so for determining the appropriate GWR variant. The paper also highlights the importance of investigating a number of secondary issues at global and local scales including collinearity, the influence of outliers, and dependent error terms. Code and data for the case study used to illustrate the route map are provided.

地理加权回归(GWR)越来越多地用于社会和环境数据的空间分析。它允许通过一系列局部回归模型而不是单一的全局模型来研究过程和关系中的空间异质性。标准GWR假设响应变量和预测变量之间的关系在相同的空间尺度上运行,但通常情况并非如此。为了解决这一问题,已经提出了几种GWR变体。本文描述了一个路线图,以决定是否使用GWR模型,如果使用,则应用三种核心变体中的哪一种:标准GWR、混合GWR或多尺度GWR(MS-GWR)。路线图包括3个应始终执行的主要步骤:(1)基本线性回归,(2)MS-GWR,以及(3)对这些步骤的结果进行调查,以决定是否使用GWR方法,如果使用,则确定适当的GWR变体。该论文还强调了在全球和局部范围内研究许多次要问题的重要性,包括共线、异常值的影响和相关误差项。提供了用于说明路线图的案例研究的代码和数据。
{"title":"A Route Map for Successful Applications of Geographically Weighted Regression","authors":"Alexis Comber,&nbsp;Christopher Brunsdon,&nbsp;Martin Charlton,&nbsp;Guanpeng Dong,&nbsp;Richard Harris,&nbsp;Binbin Lu,&nbsp;Yihe Lü,&nbsp;Daisuke Murakami,&nbsp;Tomoki Nakaya,&nbsp;Yunqiang Wang,&nbsp;Paul Harris","doi":"10.1111/gean.12316","DOIUrl":"https://doi.org/10.1111/gean.12316","url":null,"abstract":"<p>Geographically Weighted Regression (GWR) is increasingly used in spatial analyses of social and environmental data. It allows spatial heterogeneities in processes and relationships to be investigated through a series of local regression models rather than a single global one. Standard GWR assumes that relationships between the response and predictor variables operate at the same spatial scale, which is frequently not the case. To address this, several GWR variants have been proposed. This paper describes a route map to decide whether to use a GWR model or not, and if so which of three core variants to apply: a standard GWR, a mixed GWR or a multiscale GWR (MS-GWR). The route map comprises 3 primary steps that should always be undertaken: (1) a basic linear regression, (2) a MS-GWR, and (3) investigations of the results of these in order to decide whether to use a GWR approach, and if so for determining the appropriate GWR variant. The paper also highlights the importance of investigating a number of secondary issues at global and local scales including collinearity, the influence of outliers, and dependent error terms. Code and data for the case study used to illustrate the route map are provided.</p>","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"55 1","pages":"155-178"},"PeriodicalIF":3.6,"publicationDate":"2022-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/gean.12316","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"50142834","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Recursive Estimation of the Spatial Error Model 空间误差模型的递归估计
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2022-01-03 DOI: 10.1111/gean.12317
Chiara Ghiringhelli, Gianfranco Piras, Giuseppe Arbia, Antonietta Mira

In this paper, we propose a recursive approach to estimate the spatial error model. We compare the suggested methodology with standard estimation procedures and we report a set of Monte Carlo experiments which show that the recursive approach substantially reduces the computational effort affecting the precision of the estimators within reasonable limits. The proposed technique can prove helpful when applied to real-time streams of geographical data that are becoming increasingly available in the big data era. Finally, we illustrate this methodology using a set of earthquake data.

本文提出了一种估计空间误差模型的递归方法。我们将建议的方法与标准估计程序进行比较,并报告了一组蒙特卡罗实验,这些实验表明递归方法在合理的范围内大大减少了影响估计器精度的计算工作量。在大数据时代,地理数据的实时流越来越多,当应用于实时数据流时,所提出的技术将被证明是有用的。最后,我们用一组地震数据来说明这种方法。
{"title":"Recursive Estimation of the Spatial Error Model","authors":"Chiara Ghiringhelli,&nbsp;Gianfranco Piras,&nbsp;Giuseppe Arbia,&nbsp;Antonietta Mira","doi":"10.1111/gean.12317","DOIUrl":"10.1111/gean.12317","url":null,"abstract":"<p>In this paper, we propose a recursive approach to estimate the spatial error model. We compare the suggested methodology with standard estimation procedures and we report a set of Monte Carlo experiments which show that the recursive approach substantially reduces the computational effort affecting the precision of the estimators within reasonable limits. The proposed technique can prove helpful when applied to real-time streams of geographical data that are becoming increasingly available in the big data era. Finally, we illustrate this methodology using a set of earthquake data.</p>","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"55 1","pages":"90-106"},"PeriodicalIF":3.6,"publicationDate":"2022-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42490531","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Spatial Causality: A Systematic Review on Spatial Causal Inference 空间因果关系:空间因果推理的系统综述
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2021-12-14 DOI: 10.1111/gean.12312
Kamal Akbari, Stephan Winter, Martin Tomko

The growing interest in causal inference in recent years has led to new causal inference methodologies and their applications across disciplines and research domains. Yet, studies on spatial causal inference are still rare. Causal inference on spatial processes is faced with additional challenges, such as spatial dependency, spatial heterogeneity, and spatial effects. These challenges can lead to spurious results and subsequently, incorrect interpretations of the outcomes of causal analyses. Recognizing the growing importance of causal inference in the spatial domain, we conduct a systematic literature review on spatial causal inference based on a formal concept mapping. To identify how to assess and control for the adverse effects of spatial influences, we assess publications relevant to spatial causal inference based on criteria relating to application discipline, methods used, and techniques applied for managing issues related to spatial processes. We thus present a snapshot of state of the art in spatial causal inference and identify methodological gaps, weaknesses and challenges of current spatial inference studies, along with opportunities for future research.

近年来,人们对因果推理的兴趣日益浓厚,导致了新的因果推理方法及其在跨学科和研究领域的应用。然而,对空间因果推理的研究仍然很少。空间过程的因果推理面临着空间依赖性、空间异质性和空间效应等方面的挑战。这些挑战可能导致虚假的结果,并随后导致对因果分析结果的不正确解释。认识到因果推理在空间领域日益增长的重要性,我们对基于形式概念映射的空间因果推理进行了系统的文献综述。为了确定如何评估和控制空间影响的不利影响,我们根据与应用学科、使用的方法和用于管理与空间过程相关问题的技术相关的标准,评估了与空间因果推理相关的出版物。因此,我们对空间因果推理的现状进行了简要介绍,并确定了当前空间推理研究的方法差距、弱点和挑战,以及未来研究的机会。
{"title":"Spatial Causality: A Systematic Review on Spatial Causal Inference","authors":"Kamal Akbari,&nbsp;Stephan Winter,&nbsp;Martin Tomko","doi":"10.1111/gean.12312","DOIUrl":"10.1111/gean.12312","url":null,"abstract":"<p>The growing interest in causal inference in recent years has led to new causal inference methodologies and their applications across disciplines and research domains. Yet, studies on <i>spatial</i> causal inference are still rare. Causal inference on spatial processes is faced with additional challenges, such as spatial dependency, spatial heterogeneity, and spatial effects. These challenges can lead to spurious results and subsequently, incorrect interpretations of the outcomes of causal analyses. Recognizing the growing importance of causal inference in the spatial domain, we conduct a systematic literature review on spatial causal inference based on a formal concept mapping. To identify how to assess and control for the adverse effects of spatial influences, we assess publications relevant to spatial causal inference based on criteria relating to application discipline, methods used, and techniques applied for managing issues related to spatial processes. We thus present a snapshot of state of the art in spatial causal inference and identify methodological gaps, weaknesses and challenges of current spatial inference studies, along with opportunities for future research.</p>","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"55 1","pages":"56-89"},"PeriodicalIF":3.6,"publicationDate":"2021-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49363047","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 15
In memoriam: Martin Charlton 纪念马丁·查尔顿
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2021-12-03 DOI: 10.1111/gean.12309
Christopher Brunsdon, Alexis Comber, Paul Harris, Jan Rigby, Andrew Large
{"title":"In memoriam: Martin Charlton","authors":"Christopher Brunsdon,&nbsp;Alexis Comber,&nbsp;Paul Harris,&nbsp;Jan Rigby,&nbsp;Andrew Large","doi":"10.1111/gean.12309","DOIUrl":"10.1111/gean.12309","url":null,"abstract":"","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"54 4","pages":"713-714"},"PeriodicalIF":3.6,"publicationDate":"2021-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46156129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
GeoDa, From the Desktop to an Ecosystem for Exploring Spatial Data GeoDa,从桌面到探索空间数据的生态系统
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2021-11-19 DOI: 10.1111/gean.12311
Luc Anselin, Xun Li, Julia Koschinsky

Since its introduction more than 15 years ago, the GeoDa software for the exploration of spatial data has transitioned from a closed source Windows-only solution to an open source and cross-platform product that takes on the look and feel of the native operating system. This article reports on the evolution in the functionality and architecture of the software and pays particular attention to its new implementation as a library, libgeoda. This library, through a clearly structured API, can be integrated into other software environments, such as R (rgeoda) and Python (pygeoda). This integration is illustrated with two small empirical examples, investigating local clusters in a historical London cholera data set and among socioeconomic determinants of health in Chicago. A timing experiment demonstrates the competitive performance of GeoDa desktop, libgeoda (C++), rgeoda and pygeoda compared to established solutions in R spdep and Python PySAL, evaluating conditional permutation inference for the Local Moran statistic.

自15年前推出以来,用于探索空间数据的GeoDa软件已经从一个仅针对windows的闭源解决方案转变为一个具有本地操作系统外观和感觉的开源跨平台产品。本文报告了该软件在功能和体系结构方面的演变,并特别关注了它作为库libgeoda的新实现。这个库通过一个结构清晰的API,可以集成到其他软件环境中,比如R (rgeoda)和Python (pygeoda)。通过两个小的实证例子说明了这种整合,调查了伦敦历史霍乱数据集中的当地集群和芝加哥健康的社会经济决定因素。一个定时实验证明了GeoDa桌面、libgeoda (c++)、rgeoda和pygeoda与在R spdeep和Python PySAL中建立的解决方案的竞争性能,评估了局部Moran统计量的条件排列推断。
{"title":"GeoDa, From the Desktop to an Ecosystem for Exploring Spatial Data","authors":"Luc Anselin,&nbsp;Xun Li,&nbsp;Julia Koschinsky","doi":"10.1111/gean.12311","DOIUrl":"10.1111/gean.12311","url":null,"abstract":"<p>Since its introduction more than 15 years ago, the GeoDa software for the exploration of spatial data has transitioned from a closed source Windows-only solution to an open source and cross-platform product that takes on the look and feel of the native operating system. This article reports on the evolution in the functionality and architecture of the software and pays particular attention to its new implementation as a library, libgeoda. This library, through a clearly structured API, can be integrated into other software environments, such as R (rgeoda) and Python (pygeoda). This integration is illustrated with two small empirical examples, investigating local clusters in a historical London cholera data set and among socioeconomic determinants of health in Chicago. A timing experiment demonstrates the competitive performance of GeoDa desktop, libgeoda (C++), rgeoda and pygeoda compared to established solutions in R spdep and Python PySAL, evaluating conditional permutation inference for the Local Moran statistic.</p>","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"54 3","pages":"439-466"},"PeriodicalIF":3.6,"publicationDate":"2021-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46860040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 15
Reproducibility of Research During COVID-19: Examining the Case of Population Density and the Basic Reproductive Rate from the Perspective of Spatial Analysis COVID-19期间研究的可重复性:基于空间分析视角的人口密度与基本繁殖率案例检验
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2021-11-18 DOI: 10.1111/gean.12307
Antonio Paez

The emergence of the novel SARS-CoV-2 coronavirus and the global COVID-19 pandemic in 2019 led to explosive growth in scientific research. Alas, much of the research in the literature lacks conditions to be reproducible, and recent publications on the association between population density and the basic reproductive number of SARS-CoV-2 are no exception. Relatively few papers share code and data sufficiently, which hinders not only verification but additional experimentation. In this article, an example of reproducible research shows the potential of spatial analysis for epidemiology research during COVID-19. Transparency and openness means that independent researchers can, with only modest efforts, verify findings and use different approaches as appropriate. Given the high stakes of the situation, it is essential that scientific findings, on which good policy depends, are as robust as possible; as the empirical example shows, reproducibility is one of the keys to ensure this.

2019年,新型冠状病毒(SARS-CoV-2)和全球新冠肺炎大流行的出现,推动了科学研究的爆炸式增长。唉,文献中的许多研究都缺乏可重复的条件,最近关于人口密度与SARS-CoV-2基本繁殖数之间关系的出版物也不例外。相对较少的论文充分共享代码和数据,这不仅阻碍了验证,而且阻碍了额外的实验。本文以可重复研究为例,展示了空间分析在COVID-19流行病学研究中的潜力。透明和开放意味着独立的研究人员只需付出适度的努力,就可以验证研究结果,并酌情使用不同的方法。鉴于形势的高度利害关系,重要的是科学发现——良好的政策所依赖的科学发现——必须尽可能有力;正如经验例子所示,再现性是确保这一点的关键之一。
{"title":"Reproducibility of Research During COVID-19: Examining the Case of Population Density and the Basic Reproductive Rate from the Perspective of Spatial Analysis","authors":"Antonio Paez","doi":"10.1111/gean.12307","DOIUrl":"10.1111/gean.12307","url":null,"abstract":"<p>The emergence of the novel SARS-CoV-2 coronavirus and the global COVID-19 pandemic in 2019 led to explosive growth in scientific research. Alas, much of the research in the literature lacks conditions to be reproducible, and recent publications on the association between population density and the basic reproductive number of SARS-CoV-2 are no exception. Relatively few papers share code and data sufficiently, which hinders not only verification but additional experimentation. In this article, an example of reproducible research shows the potential of spatial analysis for epidemiology research during COVID-19. Transparency and openness means that independent researchers can, with only modest efforts, verify findings and use different approaches as appropriate. Given the high stakes of the situation, it is essential that scientific findings, on which good policy depends, are as robust as possible; as the empirical example shows, reproducibility is one of the keys to ensure this.</p>","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"54 4","pages":"860-880"},"PeriodicalIF":3.6,"publicationDate":"2021-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8652856/pdf/GEAN-9999-0.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39719203","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Reproducible Science Is Vital for a Stronger Evidence Base During the COVID-19 Pandemic 在COVID-19大流行期间,可再生科学对于建立更强有力的证据基础至关重要
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2021-11-16 DOI: 10.1111/gean.12314
Karla Therese L. Sy, Laura F. White, Brooke E. Nichols

Reproducible research becomes even more imperative as we build the evidence base on SARS-CoV-2 epidemiology, diagnosis, prevention, and treatment. In his study, Paez assessed the reproducibility of COVID-19 research during the pandemic, using a case study of population density. He found that most articles that assess the relationship of population density and COVID-19 outcomes do not publicly share data and code, except for a few, including our paper, which he stated “illustrates the importance of good reproducibility practices”. Paez recreated our analysis using our code and data from the perspective of spatial analysis, and his new model came to a different conclusion. The disparity between our and Paez’s findings, as well as other existing literature on the topic, give greater impetus to the need for further research. As there has been near exponential growth of COVID-19 research across a wide range of scientific disciplines, reproducible science is a vital component to produce reliable, rigorous, and robust evidence on COVID-19, which will be essential to inform clinical practice and policy in order to effectively eliminate the pandemic.

随着我们建立基于SARS-CoV-2流行病学、诊断、预防和治疗的证据基础,可重复性研究变得更加必要。在他的研究中,Paez通过对人口密度的案例研究,评估了COVID-19研究在大流行期间的可重复性。他发现,大多数评估人口密度与COVID-19结果之间关系的文章都没有公开分享数据和代码,除了少数几篇,包括我们的论文,他说这篇文章“说明了良好可重复性实践的重要性”。Paez从空间分析的角度,利用我们的代码和数据重现了我们的分析,他的新模型得出了不同的结论。我们和Paez的研究结果之间的差异,以及其他关于该主题的现有文献,更大程度上推动了进一步研究的需要。由于在广泛的科学学科中对COVID-19的研究几乎呈指数级增长,可再生科学是提供关于COVID-19的可靠、严格和有力证据的重要组成部分,这对于为有效消除大流行提供临床实践和政策信息至关重要。
{"title":"Reproducible Science Is Vital for a Stronger Evidence Base During the COVID-19 Pandemic","authors":"Karla Therese L. Sy,&nbsp;Laura F. White,&nbsp;Brooke E. Nichols","doi":"10.1111/gean.12314","DOIUrl":"10.1111/gean.12314","url":null,"abstract":"<p>Reproducible research becomes even more imperative as we build the evidence base on SARS-CoV-2 epidemiology, diagnosis, prevention, and treatment. In his study, Paez assessed the reproducibility of COVID-19 research during the pandemic, using a case study of population density. He found that most articles that assess the relationship of population density and COVID-19 outcomes do not publicly share data and code, except for a few, including our paper, which he stated “illustrates the importance of good reproducibility practices”. Paez recreated our analysis using our code and data from the perspective of spatial analysis, and his new model came to a different conclusion. The disparity between our and Paez’s findings, as well as other existing literature on the topic, give greater impetus to the need for further research. As there has been near exponential growth of COVID-19 research across a wide range of scientific disciplines, reproducible science is a vital component to produce reliable, rigorous, and robust evidence on COVID-19, which will be essential to inform clinical practice and policy in order to effectively eliminate the pandemic.</p>","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"55 1","pages":"203-206"},"PeriodicalIF":3.6,"publicationDate":"2021-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8652901/pdf/GEAN-9999-0.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39719204","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Balancing Spatial and Non-Spatial Variation in Varying Coefficient Modeling: A Remedy for Spurious Correlation 在变系数模型中平衡空间和非空间差异:对虚假相关的补救
IF 3.6 3区 地球科学 Q1 GEOGRAPHY Pub Date : 2021-11-14 DOI: 10.1111/gean.12310
Daisuke Murakami, Daniel A. Griffith

This study discusses the importance of balancing spatial and non-spatial variation in spatial regression modeling. Unlike spatially varying coefficients (SVC) modeling, which is popular in spatial statistics, non-spatially varying coefficients (NVC) modeling has largely been unexplored in spatial fields. Nevertheless, as we will explain, consideration of non-spatial variation is needed not only to improve model accuracy but also to reduce spurious correlation among varying coefficients, which is a major problem in SVC modeling. We consider a Moran eigenvector approach modeling spatially and non-spatially varying coefficients (S&NVC). A Monte Carlo simulation experiment comparing our S&NVC model with existing SVC models suggests both modeling accuracy and computational efficiency for our approach. Beyond that, somewhat surprisingly, our approach identifies true and spurious correlations among coefficients nearly perfectly, even when usual SVC models suffer from severe spurious correlations. It implies that S&NVC model should be used even when the analysis purpose is modeling SVCs. Finally, our S&NVC model is employed to analyze a residential land price data set. Its results suggest existence of both spatial and non-spatial variation in regression coefficients in practice. The S&NVC model is now implemented in the R package spmoran.

本研究讨论了平衡空间和非空间变化在空间回归建模中的重要性。与空间统计学中流行的空间变化系数建模不同,非空间变化系数(NVC)建模在很大程度上尚未在空间领域进行探索。然而,正如我们将要解释的那样,不仅需要考虑非空间变化来提高模型精度,还需要减少变化系数之间的伪相关性,这是SVC建模中的一个主要问题。我们首先开发了一种估计空间和非空间变化系数(S&NVC)的Moran特征向量方法。虽然计算负担可能令人望而却步,即使对于中等样本,我们也可以通过应用预条件估计方法来减轻这一成本。蒙特卡罗模拟实验将我们的S&NVC模型与现有的SVC模型进行了比较,结果表明我们的方法具有估计精度和计算效率。除此之外,有些令人惊讶的是,我们的方法估计几乎完美地识别了系数之间的真实和虚假相关性,即使通常的SVC模型存在严重的虚假相关性。这意味着,即使分析目的是估计SVC,也应该使用S&NVC模型。最后,利用我们的S&NVC模型对一个住宅地价数据集进行了分析。其结果表明,在实践中,回归系数既存在空间变异,也存在非空间变异。S&NVC模型是在R软件包spmoran中实现的。
{"title":"Balancing Spatial and Non-Spatial Variation in Varying Coefficient Modeling: A Remedy for Spurious Correlation","authors":"Daisuke Murakami,&nbsp;Daniel A. Griffith","doi":"10.1111/gean.12310","DOIUrl":"10.1111/gean.12310","url":null,"abstract":"<p>This study discusses the importance of balancing spatial and non-spatial variation in spatial regression modeling. Unlike spatially varying coefficients (SVC) modeling, which is popular in spatial statistics, non-spatially varying coefficients (NVC) modeling has largely been unexplored in spatial fields. Nevertheless, as we will explain, consideration of non-spatial variation is needed not only to improve model accuracy but also to reduce spurious correlation among varying coefficients, which is a major problem in SVC modeling. We consider a Moran eigenvector approach modeling spatially and non-spatially varying coefficients (S&amp;NVC). A Monte Carlo simulation experiment comparing our S&amp;NVC model with existing SVC models suggests both modeling accuracy and computational efficiency for our approach. Beyond that, somewhat surprisingly, our approach identifies true and spurious correlations among coefficients nearly perfectly, even when usual SVC models suffer from severe spurious correlations. It implies that S&amp;NVC model should be used even when the analysis purpose is modeling SVCs. Finally, our S&amp;NVC model is employed to analyze a residential land price data set. Its results suggest existence of both spatial and non-spatial variation in regression coefficients in practice. The S&amp;NVC model is now implemented in the R package spmoran.</p>","PeriodicalId":12533,"journal":{"name":"Geographical Analysis","volume":"55 1","pages":"31-55"},"PeriodicalIF":3.6,"publicationDate":"2021-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/gean.12310","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44618791","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
期刊
Geographical Analysis
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1