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Reduced growth sensitivity to water availability as potential indicator of drought-induced tree mortality risk in a Mediterranean Pinus sylvestris L. forest 地中海西洋松森林生长对水分敏感性降低作为干旱诱导树木死亡风险的潜在指标
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-11-09 DOI: 10.3389/ffgc.2023.1249246
Asier Herrero, Raquel González-Gascueña, Patricia González-Díaz, Paloma Ruiz-Benito, Enrique Andivia
Introduction Drought-associated tree mortality has been increasing worldwide since the last decades, impacting structure and functioning of forest ecosystems, with implications for energy, carbon and water fluxes. However, the understanding of the individual vulnerability to drought-induced mortality is still limited. Methods We aimed to identify the factors that triggered the mortality of the widely distributed Pinus sylvestris L. in an extensive forest area in central Spain. We compared radial growth patterns in pairs of alive and recently dead individuals that co-occur in close proximity and present similar age and size, thereby isolating the effects of size and environment from the mortality process. Temporal dynamics of growth, growth synchrony, and growth sensitivity to water availability (precipitation minus potential evapotranspiration) were compared between alive and recently dead trees. Results and discussion Over the last 50 years, although we did not detect significant differences in growth between alive and dead trees, an increase in the growth synchrony and sensitivity to water availability (i.e. slope of the climatic water balance in the growth model) was observed in all trees as drought intensity increased. 20 years before mortality, dead individuals showed lower growth synchrony and growth sensitivity to water availability than alive ones, without significant differences in growth. Recorded reduction in growth synchrony and growth sensitivity to water availability in dead trees suggests a decoupling between tree growth and climate, which could increase the risk of hydraulic failure and/or carbon starvation under increasingly arid conditions. Thus, the use of reduced growth sensitivity to water availability as potential early-warning signal of tree mortality, together with reduced growth synchrony, should be further explored, particularly in pine species in seasonally dry areas.
导语过去几十年来,全球与干旱相关的树木死亡率一直在上升,影响了森林生态系统的结构和功能,对能源、碳和水通量产生了影响。然而,对个人易受干旱引起的死亡的了解仍然有限。方法在西班牙中部广阔的森林地区,对分布广泛的西尔维斯特松(Pinus sylvestris L.)进行死亡率分析。我们比较了年龄和体型相近的活着的和最近死亡的个体的径向生长模式,从而将体型和环境的影响从死亡过程中分离出来。比较了活树和新死树的生长动态、生长同步和生长对水分有效性(降水减去潜在蒸散)的敏感性。在过去的50年里,尽管我们没有发现活树和死树之间生长的显著差异,但随着干旱强度的增加,所有树木的生长同步和对水分有效性的敏感性(即生长模型中气候水平衡的斜率)都有所增加。死亡前20 a,死亡个体的生长同步性和生长对水分敏感性均低于活个体,但生长差异不显著。枯死树木的生长同步性和生长对水分敏感性的降低表明树木生长与气候之间存在脱钩,这可能会增加在日益干旱的条件下发生水力衰竭和/或碳饥饿的风险。因此,应进一步探索利用生长对水供应的敏感性降低作为树木死亡的潜在预警信号,以及生长同动性降低,特别是在季节性干旱地区的松树中。
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引用次数: 0
Avoided wildfire impact modeling with counterfactual probabilistic analysis 用反事实概率分析避免了野火影响建模
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-11-08 DOI: 10.3389/ffgc.2023.1266413
Matthew P. Thompson, John F. Carriger
Assessing the effectiveness and measuring the performance of fuel treatments and other wildfire risk mitigation efforts are challenging endeavors. Perhaps the most complicated is quantifying avoided impacts. In this study, we show how probabilistic counterfactual analysis can help with performance evaluation. We borrow insights from the disaster risk mitigation and climate event attribution literature to illustrate a counterfactual framework and provide examples using ensemble wildfire simulations. Specifically, we reanalyze previously published fire simulation data from fire-prone landscapes in New Mexico, USA, and show applications for post-event analysis as well as pre-event evaluation of fuel treatment scenarios. This approach found that treated landscapes likely would have reduced fire risk compared to the untreated scenarios. To conclude, we offer ideas for future expansions in theory and methods.
评估燃料处理和其他减轻野火风险工作的有效性和绩效是一项具有挑战性的工作。也许最复杂的是量化可避免的影响。在本研究中,我们展示了概率反事实分析如何帮助绩效评估。我们借鉴了灾害风险缓解和气候事件归因文献中的见解来说明一个反事实框架,并提供了使用集合野火模拟的示例。具体来说,我们重新分析了以前发表的美国新墨西哥州火灾多发地区的火灾模拟数据,并展示了对燃料处理场景的事后分析和事前评估的应用。该方法发现,与未处理的场景相比,处理过的景观可能会降低火灾风险。最后,我们在理论和方法上为未来的扩展提供了思路。
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引用次数: 0
Using essential biodiversity variables to assess forest ecosystem integrity 利用基本生物多样性变量评估森林生态系统完整性
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-11-08 DOI: 10.3389/ffgc.2023.1098901
Arildo Dias, Shaya Van Houdt, Katrin Meschin, Katherine Von Stackelberg, Mari-Liis Bago, Lauren Baldarelli, Karen Gonzalez Downs, Mariel Luuk, Timothée Delubac, Elio Bottagisio, Kuno Kasak, Atilcan Kebabci, Oliver Levers, Igor Miilvee, Jana Paju-Hamburg, Rémy Poncet, Massimiliano Sanfilippo, Jüri Sildam, Dmitri Stepanov, Donalda Karnauskaite
Introduction An unprecedented amount of Earth Observations and in-situ data has become available in recent decades, opening up the possibility of developing scalable and practical solutions to assess and monitor ecosystems across the globe. Essential Biodiversity Variables are an example of the integration between Earth Observations and in-situ data for monitoring biodiversity and ecosystem integrity, with applicability to assess and monitor ecosystem structure, function, and composition. However, studies have yet to explore how such metrics can be organized in an effective workflow to create a composite Ecosystem Integrity Index and differentiate between local plots at the global scale. Methods Using available Essential Biodiversity Variables, we present and test a framework to assess and monitor forest ecosystem integrity at the global scale. We first defined the theoretical framework used to develop the workflow. We then measured ecosystem integrity across 333 forest plots of 5 km 2 . We classified the plots across the globe using two main categories of ecosystem integrity (Top and Down) defined using different Essential Biodiversity Variables. Results and discussion: We found that ecosystem integrity was significantly higher in forest plots located in more intact areas than in forest plots with higher disturbance. On average, intact forests had an Ecosystem Integrity Index score of 5.88 (CI: 5.53–6.23), whereas higher disturbance lowered the average to 4.97 (CI: 4.67–5.26). Knowing the state and changes in forest ecosystem integrity may help to deliver funding to priority areas that would benefit from mitigation strategies targeting climate change and biodiversity loss. This study may further provide decision- and policymakers with relevant information about the effectiveness of forest management and policies concerning forests. Our proposed method provides a flexible and scalable solution that facilitates the integration of essential biodiversity variables to monitor forest ecosystems.
近几十年来,大量的地球观测和现场数据已经可用,这为开发可扩展和实用的解决方案来评估和监测全球生态系统提供了可能性。生物多样性基本变量(Essential Biodiversity Variables)是将地球观测与原位数据相结合,用于监测生物多样性和生态系统完整性的一个例子,适用于评估和监测生态系统的结构、功能和组成。然而,研究尚未探索如何将这些指标组织在一个有效的工作流程中,以创建一个复合的生态系统完整性指数,并在全球范围内区分局部样地。方法利用现有的基本生物多样性变量,提出并验证了一个评估和监测全球尺度森林生态系统完整性的框架。我们首先定义了用于开发工作流的理论框架。然后,我们测量了333个5平方公里森林样地的生态系统完整性。我们使用两个主要的生态系统完整性类别(顶部和向下)对全球的样地进行分类,这些生态系统完整性类别使用不同的基本生物多样性变量定义。结果与讨论:完整程度较高的样地的生态系统完整性显著高于干扰程度较高的样地。完整森林的生态系统完整性指数平均为5.88 (CI: 5.53 ~ 6.23),而受到较大干扰的森林生态系统完整性指数平均为4.97 (CI: 4.67 ~ 5.26)。了解森林生态系统完整性的状况和变化可能有助于向优先领域提供资金,这些领域将受益于针对气候变化和生物多样性丧失的缓解战略。这项研究可以进一步为决策者提供有关森林管理和有关森林政策有效性的相关信息。该方法提供了一种灵活、可扩展的解决方案,便于整合必要的生物多样性变量来监测森林生态系统。
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引用次数: 0
Modeling climate-smart forest management and wood use for climate mitigation potential in Maryland and Pennsylvania 为马里兰州和宾夕法尼亚州的气候智能型森林管理和木材利用模拟气候缓解潜力
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-11-07 DOI: 10.3389/ffgc.2023.1259010
Chad C. Papa, Kendall DeLyser, Kylie Clay, Daphna Gadoth-Goodman, Lauren Cooper, Werner A. Kurz, Michael Magnan, Todd Ontl
State and local governments are increasingly interested in understanding the role forests and harvested wood products play in regional carbon sinks and storage, their potential contributions to state-level greenhouse gas (GHG) reductions, and the interactions between GHG reduction goals and potential economic opportunities. We used empirically driven process-based forest carbon dynamics and harvested wood product models in a systems-based approach to project the carbon impacts of various forest management and wood utilization activities in Maryland and Pennsylvania from 2007 to 2100. To quantify state-wide forest carbon dynamics, we integrated forest inventory data, harvest and management activity data, and remotely-sensed metrics of land-use change and natural forest disturbances within a participatory modeling approach. We accounted for net GHG emissions across (1) forest ecosystems (2) harvested wood products, (3) substitution benefits from wood product utilization, and (4) leakage associated with reduced in-state harvesting activities. Based on state agency partner input, a total of 15 management scenarios were modeled for Maryland and 13 for Pennsylvania, along with two climate change impact scenarios and two bioenergy scenarios for each state. Our findings show that both strategic forest management and wood utilization can provide substantial climate change mitigation potential relative to business-as-usual practices, increasing the forest C sink by 29% in Maryland and 38% in Pennsylvania by 2030 without disrupting timber supplies. Key climate-smart forest management activities include maintaining and increasing forest extent, fostering forest resiliency and natural regeneration, encouraging sustainable harvest practices, balancing timber supply and wood utilization with tree growth, and preparing for future climate impacts. This study adds to a growing body of work that quantifies the relationships between forest growth, forest disturbance, and harvested wood product utilization, along with their collective influence on carbon stocks and fluxes, to identify pathways to enhance forest carbon sinks in support of state-level net-zero emission targets.
州和地方政府越来越有兴趣了解森林和采伐木材产品在区域碳汇和储存中的作用,它们对州一级温室气体(GHG)减排的潜在贡献,以及温室气体减排目标与潜在经济机会之间的相互作用。本文采用基于系统的方法,采用基于经验驱动过程的森林碳动态和采伐木材产品模型,对2007年至2100年马里兰州和宾夕法尼亚州各种森林管理和木材利用活动的碳影响进行了预测。为了量化全州森林碳动态,我们将森林清查数据、采伐和管理活动数据以及土地利用变化和天然林干扰的遥感指标整合到参与式建模方法中。我们考虑了以下方面的温室气体净排放:(1)森林生态系统;(2)采伐的木材产品;(3)木材产品利用带来的替代效益;(4)与州内采伐活动减少相关的泄漏。根据州机构合作伙伴的输入,马里兰州和宾夕法尼亚州分别模拟了15个和13个管理情景,每个州分别模拟了两个气候变化影响情景和两个生物能源情景。我们的研究结果表明,相对于一切照旧的做法,战略性森林管理和木材利用都可以提供巨大的减缓气候变化的潜力,到2030年,在不中断木材供应的情况下,马里兰州和宾夕法尼亚州的森林碳汇分别增加29%和38%。关键的气候智慧型森林管理活动包括维持和扩大森林面积,培养森林恢复力和自然再生能力,鼓励可持续采伐做法,平衡木材供应和木材利用与树木生长之间的关系,以及为未来的气候影响做好准备。本研究为量化森林生长、森林干扰和采伐木材产品利用之间的关系以及它们对碳储量和通量的集体影响的大量工作提供了补充,以确定增强森林碳汇的途径,以支持国家级净零排放目标。
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引用次数: 0
Effects of forest spatial types, element compositions and forest stands on restorative potential and aesthetic preference 森林空间类型、元素组成和林分对恢复潜力和审美偏好的影响
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-11-02 DOI: 10.3389/ffgc.2023.1218134
Yuqian Wang, Geyan Liu, Mingyan Jiang, Qin Yang, Qibing Chen, Xi Li, Zhenghua Luo, Huixing Song, Juan Du, Xiaofang Yu, Bingyang Lv, Nian Li
Introduction As global urbanization intensifies, the physical and mental stressors of modern life have led to the growing prevalence of suboptimal health conditions. Spending time in a forest benefits human health and well-being. In this context, based on the forest spatial types (forest interior and forest edge spaces), landscape elements (architecture, water and roads) and forest stands (coniferous, broadleaf and bamboo forests), this study investigated the effects of different forest spatial landscape characteristics on the restorative potential for college students, aesthetic preference and eye movement behavior (total fixation duration and fixation count). Methods In this study, a total of 60 subjects were exposed to 42 photographs depicting typical forest landscapes acquired through field studies. The Short-version Revised Restoration and Preference Scale and eye-tracking technology, were employed to study the recovery efficiency and visual attraction of forest spatial of different forest spatial types, element compositions and forest stands. Results (1) The restorative potential and aesthetic preference score of forest edge spaces were significantly higher than those of forest interior spaces. (2) The restorative potential of bamboo forests was significantly higher than those of coniferous and broadleaf forests. (3) In terms of forest interior space, the restorative potential of “forest + 1 element” composition and “forest + 2 elements” composition was significantly higher than that of pure forest, and the restorative potential of interior space of bamboo forest was significantly higher than those of coniferous and broadleaf forests. (4) In terms of forest edge space, the restorative potential of “forest + 2 elements” composition was significantly higher than that of pure forest, and the restorative potential of pure forests was significantly higher than that of the “forest + 1 element” composition. (5) The restorative potential of forest spatial landscape characteristics positively correlated with aesthetic preference and negatively correlated with total fixation duration and fixation count. These results can provide a reference for future forest landscape research, construction and management.
随着全球城市化的加剧,现代生活的身心压力因素导致健康状况欠佳的现象日益普遍。在森林中度过时光有益于人类的健康和福祉。在此背景下,基于森林空间类型(森林内部和森林边缘空间)、景观要素(建筑、水和道路)和林分(针叶林、阔叶林和竹林),研究了不同森林空间景观特征对大学生修复潜力、审美偏好和眼动行为(总注视时间和注视次数)的影响。方法在本研究中,共60名被试接触了42张通过实地考察获得的典型森林景观照片。采用短版修正恢复偏好量表和眼动追踪技术,对不同森林空间类型、元素组成和林分的森林空间恢复效率和视觉吸引力进行了研究。结果(1)森林边缘空间的恢复潜力和审美偏好得分显著高于森林内部空间。(2)竹林的恢复潜力显著高于针叶林和阔叶林。(3)在森林内部空间方面,“森林+ 1元素”和“森林+ 2元素”组成的恢复潜力显著高于纯森林,竹林内部空间的恢复潜力显著高于针叶林和阔叶林。(4)在森林边缘空间上,“森林+ 2元素”组成的恢复潜力显著高于纯森林,纯森林的恢复潜力显著高于“森林+ 1元素”组成的恢复潜力。(5)森林空间景观特征的恢复潜力与审美偏好正相关,与总固定时长和固定次数负相关。研究结果可为今后森林景观的研究、建设和管理提供参考。
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引用次数: 0
Long-term changes in coarse woody debris abundance in three Appalachian headwater streams with differing best management practices 在不同的最佳管理措施下,阿巴拉契亚山脉三条水源粗木屑丰度的长期变化
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-10-30 DOI: 10.3389/ffgc.2023.1242878
Kenton L. Sena, Jerrica K. Flynn, Wendy Leuenberger, Randall Kolka, Christopher D. Barton
Introduction Timber harvests influence coarse woody debris (CWD) dynamics both initially and long-term—contributing a significant amount of CWD as slash immediately after harvest, but also removing some or all of the mature trees necessary to produce CWD over time. Whereas shelterwood and other similar timber harvest systems retain varying amounts of the overstory, preserving CWD production after harvest, commercial clearcutting essentially eliminates sources of fresh CWD until regenerating trees are large enough to contribute CWD through fallen limbs or trunks, often decades after harvest. Forestry best management practices (BMPs) are critical for reducing the water quality impacts of timber harvest, but their effects on riparian and stream CWD are not well understood. Methods The current project explores CWD dynamics (surveyed in 2001, 2004, 2009, and 2020) in three eastern Kentucky watersheds receiving differing timber harvest treatments in 1983: unharvested control, BMPs (clearcut with a protected streamside management zone), and no BMPs (clearcut). Results Analysis of hydrology data over the period of record demonstrated significant flooding in 2004 that likely “reset” CWD in the study watersheds. Coarse woody debris volume was higher in control (3.33 m 3 /ha) than no BMP (1.03 m 3 /ha) in 2020, with CWD accumulation rates ranging from 0.039 m 3 /ha in the no BMP watershed to 0.19 m 3 /ha in the control. Discussion While not significantly different, CWD volume was nominally higher in the BMP watershed than the No BMP watershed, suggesting that, in addition to their many other benefits, streamside management zones help facilitate CWD provisioning during stand initiation after a commercial clearcut harvest. Furthermore, this study suggests that provisioning of CWD may not recover after clearcut harvesting for 100 years or more.
木材采伐会影响初始和长期的粗木屑(CWD)动态,在采伐后立即产生大量的CWD,但随着时间的推移,也会去除产生CWD所需的部分或全部成熟树木。尽管防护林和其他类似的木材采伐系统保留了不同数量的被覆盖层,保留了采伐后产生的CWD,但商业性砍伐基本上消除了新CWD的来源,直到再生的树木足够大,通常在采伐后的几十年里,通过倒下的树枝或树干来贡献CWD。林业最佳管理实践(BMPs)对于减少木材采伐对水质的影响至关重要,但其对河岸和溪流CWD的影响尚未得到很好的了解。本项目探讨了肯塔基州东部三个流域的CWD动态(分别于2001年、2004年、2009年和2020年进行了调查),这些流域在1983年接受了不同的木材采伐处理:未采伐控制、bmp(有保护的河滨管理区的砍伐)和无bmp(砍伐)。结果有记录以来的水文数据分析表明,2004年发生了严重的洪水,可能“重置”了研究流域的CWD。2020年,对照区粗木屑体积(3.33 m 3 /ha)高于无BMP区(1.03 m 3 /ha), CWD累积速率从无BMP区0.039 m 3 /ha到对照区0.19 m 3 /ha不等。虽然没有显著差异,但BMP流域的CWD量名义上高于无BMP流域,这表明,除了它们的许多其他好处外,河滨管理区有助于在商业采伐后林分建立期间促进CWD的供应。此外,本研究表明,在采伐后100年或更长时间内,CWD的供应可能不会恢复。
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引用次数: 0
Phenotypic plasticity in Pinus canariensis seedlings growing at chilling and freezing temperatures 加那利松幼苗在低温和冰冻温度下的表型可塑性
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-10-27 DOI: 10.3389/ffgc.2023.1303886
José Carlos Miranda, Unai López de Heredia, Victoria Fernández, Pilar Pita
Global change is affecting the frequency and temporal distribution of frost events. We can expect damage caused by low temperatures to increase specially at the upper limit of a species’ elevation range. Here, we assessed how Pinus canariensis two-year old seedlings from different islands and elevations responded differently to chilling and freezing temperatures. Seedlings from six populations were grown either in a greenhouse (t min = 5 ̊C, chilling conditions) or outdoors (t min = −3.3 ̊C, freezing conditions) for 104 days in winter. Seedlings from one of these populations belonged to three half-sib families. Maximum quantum yield of Photosystem II and evapotranspiration (ETP) were determined four times throughout the study. All populations suffered photoinhibition under freezing but not under chilling conditions. We measured the lowest ETP in the population from the warmest and driest environment and lowest elevation (250 m) both under chilling and freezing conditions. The three populations from the higher elevations reached the highest ETP under chilling, a likely adaptation to the shortening of the vegetative period. The effect of elevation remained elusive for other parameters, which could be partly attributed to high intrapopulation variability. Epicuticular wax concentration increased and needle water content decreased in plants growing outdoors. All populations except the one most affected by cold dehydration showed osmotic adjustment and a simultaneous decrease in tissue elasticity under freezing. This response was stronger in the population from the highest elevation (2,241 m). Our results highlight the coexistence of adaptive processes, genetic variation and plasticity conditioning the response to low temperatures in this species.
全球变化正在影响霜冻事件的频率和时间分布。我们可以预期,低温造成的损害会增加,特别是在物种海拔范围的上限。在此,我们评估了来自不同岛屿和海拔的加那利松2年树苗对低温和冰冻温度的不同反应。将6个群体的幼苗分别在温室(温度≤5℃,低温条件)和室外(温度≤- 3.3℃,低温条件)培养104天。其中一个种群的幼苗属于三个半同胞家庭。在整个研究过程中,测定了4次光系统II的最大量子产率和蒸散量(ETP)。所有种群在冷冻条件下均有光抑制,而在低温条件下无光抑制。在寒冷和冰冻条件下,在最温暖和最干燥的环境和海拔最低(250米)的种群中,我们测量了最低的ETP。海拔较高的3个种群在低温条件下ETP最高,这可能是对植被期缩短的适应。海拔对其他参数的影响仍然难以捉摸,这可能部分归因于较高的种群内变异性。室外生长的植物表皮蜡浓度升高,针叶含水量降低。除受冷脱水影响最严重的种群外,其余种群在冷冻条件下均表现出渗透调节和组织弹性降低的现象。在海拔最高的地区(2,241 m),这种反应更为强烈。我们的研究结果强调了适应过程、遗传变异和可塑性调节共存于该物种对低温的反应中。
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引用次数: 0
RE:Growth—A toolkit for analyzing secondary forest aboveground carbon dynamics in the Brazilian Amazon RE: growth -一个用于分析巴西亚马逊地区次生林地上碳动态的工具包
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-10-27 DOI: 10.3389/ffgc.2023.1230734
Viola H. A. Heinrich, Stephen Sitch, Thais M. Rosan, Celso H. L. Silva-Junior, Luiz E. O. C. Aragão
DATA REPORT article Front. For. Glob. Change, 27 October 2023Sec. Tropical Forests Volume 6 - 2023 | https://doi.org/10.3389/ffgc.2023.1230734
数据报告文章前部。对。水珠。变更,2023年10月27日热带森林卷6 - 2023 | https://doi.org/10.3389/ffgc.2023.1230734
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引用次数: 0
Genome-wide identification reveals conserved carbohydrate-active enzyme repertoire in termites 全基因组鉴定揭示了白蚁保守的碳水化合物活性酶库
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-10-27 DOI: 10.3389/ffgc.2023.1240804
Shulin He, Amrita Chakraborty, Fei Li, Cao Zhou, Binchuan Zhang, Bin Chen, Bin Jiang
Termites play an important role as decomposers of organic matter in forests by utilizing their gut symbionts and associated carbohydrate-active enzymes (CAZymes) to digest wood materials. However, there is a limited understanding of the entire repertoire of CAZymes and their evolution in termite genomes. Here we identified the gene families of CAZymes in publicly available termite genomes and analyzed the evolution of abundant gene families. We found that 79 CAZyme gene families from the carbohydrate-binding module and four CAZyme classes, including glycosyl transferase (GT), glycoside hydrolase (GH), auxiliary activity (AA) and carbohydrate esterase (CE), were present in termites with minor variations across termite species except for a few gene families. The gene trees of the large and conserved gene families have several groups of genes from all species, and each group encodes enzymes with complete corresponding domains. Three gene families, namely GT1, GH1 and AA3, exhibited significant variations in gene numbers and experienced several losses and a few duplications, which might be related to their rich gut symbionts and newly gained functions. Furthermore, the overall expression of CAZymes appears to have a caste- and tissue-specific pattern, reflecting a division of labor in termite colonies. Overall, these results reveal a likely stable CAZyme repertoire in termites and pave the way for further research on the functional contribution of termites to wood digestion.
白蚁利用其肠道共生体和相关的碳水化合物活性酶(CAZymes)消化木材材料,在森林中发挥着重要的有机物分解者作用。然而,人们对白蚁基因组中所有CAZymes及其进化的了解有限。本研究鉴定了白蚁基因组中CAZymes的基因家族,并分析了丰富的基因家族的进化。结果表明,白蚁体内存在糖基转移酶(GT)、糖苷水解酶(GH)、辅助活性酶(AA)和糖类酯酶(CE)等4个CAZyme基因家族和糖结合模块的79个CAZyme基因家族,除少数基因家族外,其他白蚁种间差异较小。大而保守的基因家族的基因树包含来自所有物种的几组基因,每组基因编码具有完整相应结构域的酶。GT1、GH1和AA3三个基因家族在基因数量上表现出明显的差异,并出现了一些缺失和重复,这可能与它们丰富的肠道共生体和新获得的功能有关。此外,CAZymes的整体表达似乎具有种姓和组织特异性模式,反映了白蚁群体中的劳动分工。总的来说,这些结果揭示了白蚁中可能稳定的CAZyme库,为进一步研究白蚁对木材消化的功能贡献铺平了道路。
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引用次数: 0
A Bayesian network model to disentangle the effects of stand and climate factors on tree mortality of Chinese fir plantations 杉木人工林林分和气候因子对树木死亡率影响的贝叶斯网络模型
3区 农林科学 Q2 ECOLOGY Pub Date : 2023-10-25 DOI: 10.3389/ffgc.2023.1298968
Yihang Jiang, Zhen Wang, Hanyue Chen, Yuxin Hu, Yancheng Qu, Sophan Chhin, Jianguo Zhang, Xiongqing Zhang
Tree mortality is a complex process that not only be affected by the various factors, such as stand and climate factors, but also the various long-term effects of the factors to each other. In this study, based on the long-term spacing trials of Chinese fir in four regions of southern China, a Bayesian network was used to model tree mortality in response to stand and climate factors, as well as comparing this approach with logistic regression and random forest method. The results showed that the Bayesian network method had the highest accuracy in predicting tree mortality. In addition, the Bayesian network approach could find the dependency in the relationship between data and provide a theoretical framework for modeling uncertainty by using probabilistic calculus and underlying graph structure. Sensitivity analysis showed relative diameter was the most important factor, and temperature was the most important climate factor. Furthermore, climate factors not only directly affected tree mortality, but also indirectly affected tree mortality through affecting relative diameter, stand density and Gini coefficient. We also found that stand competition, structural heterogeneity and age affected tree mortality under climate change, and a moderate level of competition condition and stand structure heterogeneity weakened the negative impact of climate factors on tree mortality. Old trees were more sensitive to climate change than young trees, especially under extreme climate conditions. Besides, we found that tree mortality was negatively correlated with moderate annual precipitation, winter mean minimum temperature, and stand structure (Gini), and low age, but positively correlated with low relative diameter, high density and age. The results will provide adaptive options for effective forest management of Chinese fir plantations under the backdrop of global climate change in the future.
树木死亡是一个复杂的过程,既受林分、气候等多种因素的影响,又受多种因素相互之间的长期影响。本研究基于中国南方4个地区杉木的长期行距试验,采用贝叶斯网络模型对林分和气候因子对杉木死亡率的响应进行了建模,并与logistic回归和随机森林方法进行了比较。结果表明,贝叶斯网络方法对树木死亡率的预测精度最高。此外,贝叶斯网络方法可以发现数据之间的依赖关系,并利用概率演算和底层图结构为不确定性建模提供理论框架。敏感性分析表明,相对直径是最重要的气候因子,温度是最重要的气候因子。此外,气候因子不仅直接影响树木死亡率,还通过影响相对直径、林分密度和基尼系数间接影响树木死亡率。气候变化条件下,林分竞争、林分结构异质性和林龄对林分死亡率均有影响,适度的竞争条件和林分结构异质性减弱了气候因子对林分死亡率的负面影响。古树比幼树对气候变化更敏感,尤其是在极端气候条件下。此外,树木死亡率与中等年降水量、冬季平均最低气温、林分结构(Gini)和低树龄呈负相关,而与低相对直径、高密度和树龄呈正相关。研究结果将为未来全球气候变化背景下杉木人工林的有效森林管理提供适应性选择。
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Frontiers in Forests and Global Change
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