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The versatility of Schizophyllum commune in nature and application 裂叶属植物在自然界中的多功能性及其应用
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-09-01 Epub Date: 2025-04-12 DOI: 10.1016/j.fbr.2025.100431
Fleur E.L. Kleijburg, Han A.B. Wösten
Schizophyllum commune is a mushroom forming basidiomycete. It is considered a versatile fungus because of its global distribution, its high genotypic and phenotypic variability, and its growth under high pressure, high cosmic radiation, as well as aerobic and anaerobic conditions. The versatility of S. commune is also evident from the fact that it normally grows as a saprophyte on a wide variety of plant waste including wood but that it also can be a pathogen of plants and animals and may be an endophyte as well. Apart from its biology, S. commune is also versatile because it is a model system for mushroom formation, mycelium materials, and cell wall architecture and composition, while it also produces molecules of interest for medical and industrial applications.
裂叶菌是一种蘑菇形担子菌。它被认为是一种多用途真菌,因为它的全球分布,其高基因型和表型变异性,以及它在高压,高宇宙辐射以及有氧和厌氧条件下的生长。S. commune的多功能性也很明显,因为它通常作为腐生植物生长在各种各样的植物废物上,包括木材,但它也可以是植物和动物的病原体,也可能是内生菌。除了它的生物学特性外,S. commune还具有多种用途,因为它是蘑菇形成、菌丝体材料、细胞壁结构和组成的模型系统,同时它还能产生医学和工业应用中感兴趣的分子。
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引用次数: 0
DNA, and the future of fungal taxonomy DNA和真菌分类学的未来
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-06-01 Epub Date: 2025-05-24 DOI: 10.1016/j.fbr.2025.100432
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引用次数: 0
Sphingolipids in fungi: Biosynthesis and key roles in biological processes 真菌中的鞘脂:生物合成及其在生物过程中的关键作用
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-06-01 Epub Date: 2025-04-18 DOI: 10.1016/j.fbr.2025.100430
Thomas Bergia, Sonia Rippa
Sphingolipids are complex lipids involved in the global cell physiology. They are significant components of the plasma membrane, contributing to the organization of lipids and anchoring of proteins. In all organisms, the biosynthesis pathway of sphingolipids begins in the endoplasmic reticulum and ends in the Golgi apparatus, where the biosynthesis of more complex sphingolipids occurs. In recent years, the key roles of sphingolipids in fungal biological processes and in the capacity of fungi to adapt to various environments have become of increasing interest. Sphingolipids are also promising as alternative targets to the emergence of multi-drug resistant pathogenic fungal strains. This review presents an outline of the fungal sphingolipid biosynthesis pathway, and an overview of recent advances in their biological roles.
鞘脂是参与细胞整体生理的复杂脂类。它们是质膜的重要组成部分,有助于脂质的组织和蛋白质的锚定。在所有生物体中,鞘脂的生物合成途径始于内质网,结束于高尔基体,在那里发生更复杂的鞘脂的生物合成。近年来,鞘脂在真菌生物过程和真菌适应各种环境的能力中的关键作用越来越引起人们的兴趣。鞘脂也有希望作为多药耐药致病真菌菌株出现的替代靶点。本文综述了真菌鞘脂生物合成途径的概况,并对其生物学作用的最新进展进行了综述。
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引用次数: 0
Which fungus it might be? Calling for a collaborative DNA barcoding exercise for mycologists 它可能是哪种真菌?呼吁真菌学家进行DNA条形码合作练习
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-06-01 Epub Date: 2025-03-01 DOI: 10.1016/j.fbr.2025.100416
Feng M. Cai , Mounes Bakhshi , Irina S. Druzhinina
This collaborative initiative calls upon mycologists, microbiologists, and biodiversity experts to participate in the community exercise and molecularly identify a collection of 45 common fungi using a comprehensive set of primary and secondary DNA barcoding sequences. Focusing on taxonomically enriched genera of Ascomycota such as Aspergillus, Penicillium, Fusarium sensu lato, Alternaria, Trichoderma, and a few others, this initiative aims to review the agreement among the mycologists, uncovering molecular identification approaches, and standardizing training methodologies for future experts. Participants are invited to contribute taxonomic assessments, with co-authorship opportunities for those analyzing at least 15 or more of the 45 phylotypes provided. The initiative seeks a minimum of one hundred identifications per strain, fostering a collaborative community effort and testing for the need to the establishment of a web platform or an automated pipeline for the verification of fungal DNA barcoding results by the expert community. Utilizing 45 nonredundant phylotypes of fungi isolated from plastic waste samples, the exercise reviews the current state of DNA barcoding technology in mycology and sets groundwork for future applications and trainings.
这项合作倡议呼吁真菌学家、微生物学家和生物多样性专家参与社区活动,并使用一套全面的初级和次级DNA条形码序列对45种常见真菌进行分子鉴定。该计划着眼于分类丰富的子囊菌属,如曲霉、青霉、镰刀菌、交替菌、木霉和其他一些属,旨在审查真菌学家之间的共识,揭示分子鉴定方法,并为未来的专家制定标准化的培训方法。参与者被邀请贡献分类学评估,与合作作者的机会为那些分析至少15或更多的45种提供的种型。该计划寻求每个菌株至少100个鉴定,促进协作社区的努力和测试,以建立一个网络平台或由专家社区验证真菌DNA条形码结果的自动化管道。利用从塑料废物样品中分离的45种非冗余真菌种型,该练习回顾了DNA条形码技术在真菌学中的现状,并为未来的应用和培训奠定了基础。
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引用次数: 0
Deciphering the oxidative stress response in Candida albicans 解读白色念珠菌的氧化应激反应
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-06-01 Epub Date: 2025-03-02 DOI: 10.1016/j.fbr.2025.100427
Víctor Arribas , Concha Gil , Gloria Molero
Candida species are the leading cause of invasive fungal infections, with Candida albicans being the most common one. Consequently, the World Health Organization has included C. albicans in its fungal priority pathogens list. Following infection, phagocytes (mostly macrophages) initiate a respiratory burst, producing oxidant compounds, such as hydrogen peroxide. In response, C. albicans activates a robust oxidative stress response to catalyze the oxidant molecules produced by the immune system and counteract their oxidative effects within the cell. The oxidative stress response of C. albicans implies proteomic changes, both in abundance and in post-translational modifications, that are not fully described yet. Proteins with immediate antioxidant properties, the MAPK signaling pathways, and transcription factors are involved in the response. In this review, we discuss the role of these factors and the interactions among them in C. albicans. Many of these mechanisms act as virulence traits that favor the invasive candidiasis and can be used as potential targets for antifungal drugs.
念珠菌是侵袭性真菌感染的主要原因,白色念珠菌是最常见的一种。因此,世界卫生组织已将白色念珠菌列入其真菌优先病原体名单。感染后,吞噬细胞(主要是巨噬细胞)引发呼吸破裂,产生氧化化合物,如过氧化氢。作为回应,白色念珠菌激活强大的氧化应激反应,催化免疫系统产生的氧化分子,并在细胞内抵消其氧化作用。白色念珠菌的氧化应激反应暗示了蛋白质组学的变化,无论是在丰度上还是在翻译后修饰上,这些变化尚未得到充分的描述。具有直接抗氧化特性的蛋白质、MAPK信号通路和转录因子参与了这一反应。本文就这些因素在白色念珠菌中的作用及其相互作用作一综述。许多这些机制作为有利于侵袭性念珠菌病的毒力特征,可以作为抗真菌药物的潜在靶点。
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引用次数: 0
“Living together” with Epichloë – Exploring the significance of non-plant partners in the fungal symbiotic network 与Epichloë“共同生活”-探索真菌共生网络中非植物伙伴的意义
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-06-01 Epub Date: 2025-04-02 DOI: 10.1016/j.fbr.2025.100429
Karolina Górzyńska
The relationships between grasses and Epichloë fungi are complex and multifaceted. Moreover, additional symbiotic partners are involved in these interactions and can influence grass-fungi associations. In this article, the symbiotic partners of Epichloë are reviewed, with the mycoparasitic fungus Clonostachys epichloë analyzed as a novel, previously unconsidered element of the symbiotic network.
Clonostachys epichloë fungus was first recognized as a mycoparasite of Epichloë. Further studies revealed that, in addition to its mycoparasitic activity, it also has entomopathogenic activity toward Botanophila flies involved in the sexual cycle of the Epichloë and can colonize the surface of grass seeds infected with the Epichloë endophyte, further modulating the grass-Epichloë interaction.
The holistic approach to analyzing interaction networks is crucial because the natural mycoparasite C. epichloë may be used to limit choke disease in grasses caused by Epichloë fungi. By examining the effects of C. epichloë on all elements of the interaction, as well as its impact on the relationships among these elements, we can effectively assess its usefulness as biocontrol agent of Epichloë.
草和Epichloë真菌之间的关系是复杂和多方面的。此外,其他共生伙伴也参与了这些相互作用,并可能影响草真菌的关联。本文综述了Epichloë的共生伙伴,并将真菌Clonostachys epichloë作为一种新的、以前未被考虑的共生网络元素进行了分析。Clonostachys epichloë真菌最初被认为是Epichloë的一种支寄生虫。进一步的研究表明,它除了具有真菌寄生活性外,还对参与Epichloë性循环的植物蝇具有昆虫致病活性,并且可以在感染Epichloë内生菌的草籽表面定殖,进一步调节grass-Epichloë的相互作用。分析相互作用网络的整体方法是至关重要的,因为天然的支寄生虫C. epichloë可以用来限制Epichloë真菌引起的草的窒息病。通过检查C. epichloë对所有相互作用要素的影响,以及它对这些要素之间关系的影响,我们可以有效地评估其作为Epichloë生物防治剂的有效性。
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引用次数: 0
An appraisal of the protection conferred by foliar Epichloë endophytes against root herbivores in plants: A meta-analysis 评价叶面Epichloë内生菌对植物根系食草动物的保护作用:荟萃分析
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-06-01 Epub Date: 2025-03-26 DOI: 10.1016/j.fbr.2025.100428
Facundo A. Decunta , Pedro E. Gundel , Daniel A. Bastías
The role of foliar endophytes in modulating plant interactions with herbivores has been less investigated in belowground than aboveground environments. We studied how foliar Epichloë endophytes influence plant performance in the presence of root herbivores. We hypothesize that the endophyte-mediated increase in host performance in the context of root herbivory is due to the stimulation of plant growth in response to the herbivore attack (i.e., tolerance) and the presence of antiherbivore alkaloids in belowground tissues (i.e., resistance). We conducted a quantitative analysis of published results in relation to plant-Epichloë-root herbivore interactions and quantified the overall effects of endophytes on both biomass of plants in the presence/absence of root herbivores and performance of root herbivores. To gain further insights into plant-herbivore resistance, we assessed the in planta distribution of Epichloë-derived alkaloids and the responses of these compounds to the root herbivory. Endophytes increased plant growth in both presence/absence of root herbivores. Epichloë also reduced the herbivore performance, although the effect was dependent on the plant-endophyte association and herbivore type. Epichloë-derived alkaloids were generally less concentrated in belowground compared to aboveground plant tissues. However, the belowground:aboveground ratio for loline alkaloid concentrations was higher in plants in presence than absence of root herbivores, suggesting a local induction of resistance. Our results suggest that foliar Epichloë endophytes enhance plant tolerance to root herbivory by promoting plant growth and reducing root herbivore performance. The observed resistance may be partially explained by the action of Epichloë-derived alkaloids that are present in belowground tissues.
在地下环境中,叶面内生菌在调节植物与食草动物相互作用中的作用研究较少。我们研究了在根食草动物存在的情况下,叶面Epichloë内生菌如何影响植物的性能。我们假设,在根食草的情况下,内生菌介导的寄主性能的提高是由于植物生长受到食草动物攻击的刺激(即耐受性)和地下组织中抗食草动物生物碱的存在(即抗性)。我们对已发表的关于plant-Epichloë-root草食动物相互作用的结果进行了定量分析,并量化了在有/没有根食动物的情况下,内生菌对植物生物量和根食动物生长性能的总体影响。为了进一步了解植物-食草动物的抗性,我们评估了Epichloë-derived生物碱在植物中的分布以及这些化合物对根食草动物的反应。在根系食草动物存在或不存在的情况下,内生菌都能促进植物生长。Epichloë也降低了食草动物的表现,尽管这种影响取决于植物-内生菌的关联和食草动物的类型。Epichloë-derived与地上植物组织相比,地下生物碱的浓度一般较低。然而,在有根食草动物的情况下,植物的地下:地上碱浓度比高于没有根食草动物的植物,这表明局部诱导了抗性。我们的研究结果表明,叶面Epichloë内生菌通过促进植物生长和降低根系食草性来增强植物对根系食草性的耐受性。观察到的抗性可以部分解释为存在于地下组织中的Epichloë-derived生物碱的作用。
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引用次数: 0
Lichen hydration, moisture dynamics and climate change: A synthesis of established methods and potential new directions 地衣水化、水分动力学和气候变化:既有方法的综合和潜在的新方向
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-06-01 Epub Date: 2025-02-19 DOI: 10.1016/j.fbr.2025.100417
Giulia Canali , Pilar Hurtado , Paolo Giordani , Christopher Ellis
The use of a functional trait approach has generally shown success in understanding how lichens are distributed, explaining their occurrence and abundance. Indeed, this success highlights the importance of understanding trait variability within and among lichen species, and at a community scale, especially where traits are related to hydration dynamics and subsequent photosynthetic activity. This review summarises what we know about lichen traits affecting hydration. We show that some lichen attributes – still the focus of attention today – were being described nearly a century ago and have since undergone refinement and redevelopment. Yet there remains a need for clear standardisation of trait measurements, and to help organise this progress we offer a distinction between core traits – whose effects are well categorised, and which have strong predictive control over measures of individual fitness and species or community response – and ancillary traits – that are worthy of investigation, but that currently have a less certain or a less clearly generalisable or transferable role in functional trait studies. Furthermore, we argue for recognition that lichens are not only poikilohydric (well cited) but also poikilothermic (less well cited), and that traits affecting hydration are closely coupled to traits (such as thallus colour) affecting their thermal properties. Thallus colour is easily quantified as a core trait and can be applied to crustose lichens so that – along with hydrophobicity – the transferability of functional traits is better achieved across lichen growth-forms, extending beyond macrolichens. Key future challenges include the scaling of lichen trait responses realised at microhabitat scales, to understand emergent effects at landscape and ecosystem scales, and we outline how new technologies are rapidly developing, to bridge this gap. Although not exhaustive, the review offers a precis of targeted background literature, helpful to lichenologists approaching trait-based ecology, or ecosystem ecologists approaching lichens.
使用功能性状方法通常在理解地衣如何分布,解释它们的发生和丰度方面取得了成功。事实上,这一成功突出了理解地衣物种内部和物种之间以及群落尺度上的性状变异的重要性,特别是在性状与水合动力学和随后的光合作用有关的地方。这篇综述总结了我们所知道的影响水合作用的地衣性状。我们展示了一些地衣属性——今天仍然是关注的焦点——在近一个世纪前就被描述了,并且经历了改进和重新开发。然而,仍然需要对性状测量进行明确的标准化,为了帮助组织这一进程,我们对核心性状和辅助性状进行了区分,核心性状的影响被很好地分类,对个体适合度和物种或群落反应的测量具有很强的预测性控制,而辅助性状则值得研究,但目前在功能性状研究中不太确定或不太清楚地推广或转移作用。此外,我们认为地衣不仅是多水的(被广泛引用),而且也是多热的(被较少引用),并且影响水合作用的性状与影响其热性能的性状(如菌体颜色)密切相关。菌体颜色很容易被量化为一种核心性状,并且可以应用于硬壳地衣,以便与疏水性一起,在地衣生长形式中更好地实现功能性状的可转移性,延伸到大地衣之外。未来的关键挑战包括在微生境尺度上实现地衣特征响应的规模化,以了解景观和生态系统尺度上的新兴效应,我们概述了新技术如何快速发展,以弥合这一差距。虽然不是详尽的,但综述提供了有针对性的背景文献,有助于地衣学家接近基于性状的生态学,或生态系统生态学家接近地衣。
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引用次数: 0
Modes of action and inhibitory activity of Trichoderma species on potato and tomato pathogenic Phytophthora infestans: A review 木霉对马铃薯和番茄致病性疫霉的作用方式及抑制活性研究进展
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-06-01 Epub Date: 2025-02-17 DOI: 10.1016/j.fbr.2025.100414
Quentin Cournault , Stéphanie Gibot-Leclerc , Noadya Monnier , Christian Steinberg
Late blight, caused by the oomycete Phytophthora infestans, is one of the most devastating diseases of potatoes and tomatoes, resulting in low yields and economic losses for farmers. Trichoderma spp. are known for their antagonistic abilities against a wide range of pathogens, including P. infestans. This review provides an overview of the current knowledge on Trichoderma spp., by (1) classifying the diversity of modes of action of Trichoderma species and (2) assessing the antagonistic ability of several species and strains of Trichoderma spp. against P. infestans in dual culture, through a meta-analysis. We found that many species of Trichoderma spp. have a double action against P. infestans, both (1) direct on the plant pathogen by emitting enzymes and volatile organic compounds and (2) plant-mediated by enhancing the host plant's defence potential. The meta-analysis showed that direct Trichoderma antagonistic ability against P. infestans is species and strain dependant. Among the most effective species, T. asperellum stands out with a mycelial inhibition potential of up to 90% for some strains. These findings were used to build a decision-making system, that accounts for Trichoderma-plant-Phytophthora interactions, pedoclimate, and strategies of Trichoderma spp. application on crops. The paper provides new insights into the management of P. infestans on potato and tomato crops and highlights promising biocontrol or fungicide mixtures, including several Trichoderma spp. and little-known species with promising regulatory effects on P. infestans.
由卵霉菌疫霉引起的晚疫病是马铃薯和番茄最具破坏性的病害之一,给农民造成低产和经济损失。木霉以其对多种病原体的拮抗能力而闻名,包括病原菌。本文通过(1)对木霉种类作用方式的多样性进行了分类;(2)通过荟萃分析,评估了几种木霉种类和菌株在双重培养中对病原菌的拮抗能力。我们发现许多种类的木霉对病原菌具有双重作用,(1)通过释放酶和挥发性有机化合物直接作用于植物病原体,(2)通过增强寄主植物的防御潜力来介导植物。meta分析显示木霉对病原菌的直接拮抗能力与菌种有关。在最有效的菌种中,曲霉(T. asperellum)对某些菌株的菌丝抑制潜力高达90%。这些发现被用来建立一个决策系统,该系统考虑了木霉-植物-疫霉的相互作用、土壤和木霉在作物上的应用策略。本文为马铃薯和番茄病原菌的管理提供了新的见解,并重点介绍了有前途的生物防治或杀菌剂混合物,包括几种对病原菌有良好调节作用的木霉和鲜为人知的物种。
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引用次数: 0
Proteomics in Metarhizium parasitism of arthropods 节肢动物绿僵菌寄生的蛋白质组学研究
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-03-01 Epub Date: 2024-12-10 DOI: 10.1016/j.fbr.2024.100409
Laura Rascovetzki Saciloto-de-Oliveira , Camila Innocente-Alves , Julia de Fraga Sant’Ana , Ana Luiza Marques , Augusto Schrank , Drauzio Eduardo Naretto Rangel , Lucélia Santi , Walter Orlando Beys-da-Silva
Species of the genus Metarhizium are ecologically and biotechnologically relevant as they infect and control arthropods, which are often pests of livestock and crops. Fungi from the genus Metarhizium are important alternatives to chemical pesticides that are toxic to humans and animals as well as deleterious to the environment. The differential secretion of proteins, including proteases, chitinases, lipases, and oxidoreductases, is crucial to the effectiveness of the Metarhizium infection system against a wide range of arthropod targets. Proteomic techniques, such as two-dimensional gel electrophoresis and different mass spectrometry approaches, have been employed to effectively identify hundreds of proteins linked to the infection of various insects and ticks, as well as proteins with different subcellular localization. Here, we review the status of proteomics applied to the Metarhizium genus to identify proteins important for infection, covering the biocontrol of various pests and specifying the techniques, experimental approaches, and identified proteins.
绿僵菌属的物种具有生态和生物技术相关性,因为它们感染和控制节肢动物,而节肢动物通常是牲畜和作物的害虫。绿僵菌属真菌是化学农药的重要替代品,这些农药对人类和动物有毒,对环境有害。包括蛋白酶、几丁质酶、脂肪酶和氧化还原酶在内的蛋白质的差异分泌对于绿僵菌感染系统对抗多种节肢动物目标的有效性至关重要。蛋白质组学技术,如二维凝胶电泳和不同的质谱方法,已经被用来有效地识别与各种昆虫和蜱虫感染有关的数百种蛋白质,以及具有不同亚细胞定位的蛋白质。本文综述了蛋白质组学在绿僵菌属中用于鉴定重要感染蛋白的研究现状,涵盖了各种害虫的生物防治,并详细介绍了技术、实验方法和鉴定的蛋白。
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引用次数: 0
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