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A systematic review of abiotic factors influencing the production of plant cell wall-degrading enzymes in Botryosphaeriaceae 影响 Botryosphaeriaceae 植物细胞壁降解酶产生的非生物因素系统综述
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-10-01 DOI: 10.1016/j.fbr.2024.100395
Julián D. Restrepo-Leal , Florence Fontaine , Caroline Rémond , Olivier Fernandez , Ludovic Besaury
The Botryosphaeriaceae family includes many worldwide fungal pathogens of economically important woody plants. To penetrate and colonize the host, the Botryosphaeriaceae species utilize a diverse array of Plant Cell Wall-Degrading Enzymes (PCWDEs) that deconstruct the main plant cell wall polymers, i.e., cellulose, hemicelluloses, pectins, and lignins. Although the PCWDEs play an essential role in pathogenicity, little has been done to understand the effect of environmental factors on their production in Botryosphaeriaceae. To explore the main factors influencing PCWDE production in Botryosphaeriaceae species, we performed a systematic search in literature databases, identifying all the existing studies reporting lignocellulolytic and pectinolytic enzyme activities. Sixty-two articles met the inclusion criteria and were included in a meta-analysis of the carbon and nitrogen source effects on the production of laccase, cellulase, xylanase, and polygalacturonase activities. Our results show that poorly-lignified plant cell walls rich in polysaccharides and nitrates enhance PCWDE titers in Botryosphaeriaceae. We also discuss the influence of other abiotic factors, such as temperature, pH, metal ions, moisture content, and surfactants. This review may be helpful for future works that aim to increase knowledge on the PCWDE regulation in the Botryosphaeriaceae family.
Botryosphaeriaceae 家族包括许多世界范围内具有重要经济价值的木本植物的真菌病原体。Botryosphaeriaceae 菌种利用各种植物细胞壁降解酶(PCWDEs)分解主要的植物细胞壁聚合物,即纤维素、半纤维素、果胶和木质素,从而穿透并定植于寄主。虽然 PCWDEs 在致病性中发挥着重要作用,但人们对环境因素对 Botryosphaeriaceae 中 PCWDEs 生成的影响了解甚少。为了探索影响 Botryosphaeriaceae 物种中 PCWDE 生成的主要因素,我们在文献数据库中进行了系统检索,确定了所有报道木质纤维素分解酶和果胶分解酶活性的现有研究。有 62 篇文章符合纳入标准,并被纳入了碳源和氮源对漆酶、纤维素酶、木聚糖酶和聚半乳糖醛酸酶活性产生影响的荟萃分析。我们的研究结果表明,富含多糖和硝酸盐的低木质化植物细胞壁可提高 Botryosphaeriaceae 的 PCWDE 滴度。我们还讨论了其他非生物因素的影响,如温度、pH 值、金属离子、含水量和表面活性剂。这篇综述可能对今后旨在增加 Botryosphaeriaceae 家族 PCWDE 调节知识的工作有所帮助。
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引用次数: 0
Cycadales' defense against insect and mammalian herbivory: Do endophytic fungi have to say something? - A hypothesis 苏铁植物抵御昆虫和哺乳动物食草的能力:内生真菌有话要说吗?- 一个假设
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-09-19 DOI: 10.1016/j.fbr.2024.100393
Yogesh Joshi, Pooja Bansal, Arjun Lal Yadav

A total of 518 endophytic fungal taxa (excluding 105 taxa identified beyond the level of genus and Mycelia sterilia) from 370 genera belonging to 188 families (including forty six isolates of uncertain taxonomic positions), were isolated from seventeen different Cycads. The results revealed that, although members of Ascomycota were dominant, the presence of Basidiomycota, Mucoromycota, Chytridiomycota, Olpidiomycota and Zoopagomycota couldn't be ruled out.

The endophytic fungi associated with Cycadales have been reported to exist in different primary lifestyles viz. plant_pathogens (86 genera), wood_saprotroph (78 genera), litter_saprotroph (44 genera), soil_saprotroph (41 genera), animal_parasite (24 genera), unspecified_saprotroph (20 genera), mycoparasite (13 genera), nectar/tap_saprotroph (11 genera), na and lichenized (08 genera each), ectomycorrhizal (07 genera), dung_saprotroph (06 genera), foliar_endophyte and arbuscular_mycorrhizal (05 genera each), epiphyte (04 genera), algal_parasite (03 genera), pollen_saprotroph and root_endophyte (02 genera each), lichen_parasite, unspecified_pathotroph, sooty_mold (01 genera each) (excluding 105 taxa which were identified either up to class, order and family level or are treated as incertae sedis, and Mycelia sterilia) and possibly produce several toxic compounds.

In a nut shell, the presence of fungal endophytes of different life histories, in a Cycad's endobiome, their long evolutionary history of association with the leaf, and capability of producing several mycotoxins could possibly mediate herbivory, and these specific fungal endophytes could be identified as candidates for future functional study.

从 17 种不同的苏铁植物中分离出了隶属于 188 个科 370 个属的 518 个内生真菌类群(不包括 105 个已鉴定为非属和菌丝体的类群)(包括 46 个分类位置不确定的分离物)。研究结果表明,虽然子囊菌科(Ascomycota)成员占主导地位,但也不排除基枝菌科(Basidiomycota)、黏菌科(Mucoromycota)、糜枝菌科(Chytridiomycota)、寡毛菌科(Opidiomycota)和祖枝菌科(Zoopagomycota)成员的存在。
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引用次数: 0
Editorial: Fungal Biology Reviews as a repository of valuable scientific photographs and graphics 编辑:真菌生物学评论》是珍贵科学照片和图表的宝库
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-09-01 DOI: 10.1016/j.fbr.2024.100383
Jan Dijksterhuis, Irina S. Druzhinina
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引用次数: 0
Cadmium-induced metal imbalance and cadmium-responsive transcriptional activator Yap1 mediated regulation of metal homeostasis 镉诱导的金属失衡与镉响应转录激活子Yap1介导的金属平衡调控
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-08-31 DOI: 10.1016/j.fbr.2024.100384
Lukman Iddrisu , Yongbin Li , Zhijia Fang , Lijun Sun , Zhiwei Huang

The absorption of cadmium (Cd) initiates a sequence of detrimental effects or harm to organisms. The presence of Cd in Saccharomyces cerevisiae affects key metal import channels, leading to a disruption in the balance of metal ions inside the organism. S. cerevisiae has established metal homeostasis mechanisms in response to Cd stress, which regulates metal transporters located in the plasma and vacuole membranes. This review analyzes the maintenance of metal homeostasis in S. cerevisiae and its mechanism from three different perspectives: (1) the effects of Cd on metals, (2) the reaction of Yap1 with Cd, and (3) glutathione (GSH) regulates the homeostasis of Yap1 in relation to metal transporters. This helps us to understand how metal homeostasis is maintained in S. cerevisiae when exposed to Cd. The generally held belief is that the reaction to Cd poisoning is strongly linked to oxidative stress. This review will offer insights into new reaction pathways to Cd that are different from oxidative stress, specifically focusing on the Cd(GS)2 complex.

镉(Cd)的吸收会对生物体产生一系列有害影响或危害。镉在酿酒酵母(Saccharomyces cerevisiae)中的存在会影响关键的金属导入通道,导致生物体内金属离子的平衡被打破。针对镉胁迫,酿酒酵母建立了金属平衡机制,调节位于质膜和液泡膜上的金属转运体。本综述从三个不同角度分析了麦角菌体内金属平衡的维持及其机制:(1)镉对金属的影响;(2)Yap1与镉的反应;(3)谷胱甘肽(GSH)调节Yap1与金属转运体的平衡关系。这有助于我们理解当暴露于镉时,葡萄孢菌是如何维持金属平衡的。人们普遍认为,镉中毒反应与氧化应激密切相关。本综述将深入探讨不同于氧化应激的新的镉反应途径,特别侧重于 Cd(GS)2 复合物。
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引用次数: 0
Biogeography and uniqueness of filamentous terrestrial fungi in the polar regions 极地丝状陆生真菌的生物地理学及其独特性
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-07-25 DOI: 10.1016/j.fbr.2024.100382
Olga A. Grum-Grzhimaylo , Anastasia A. Shurigina , Alfons J.M. Debets , Duur K. Aanen

Fungi are widely distributed on our planet, including in extremely harsh habitats, such as the polar regions. The extreme conditions of those habitats limit the number of organisms capable of living there, but some fungi are adapted to the polar conditions and play essential roles in nutrient cycling. However, knowledge about their diversity, distribution, and functioning is fragmented, and approaches used to study them are diverse, often yielding difficult-to-compare results. We present maps with locations of mycological studies in the Arctic and Antarctica, as well as a list of mycelial fungi found on various terrestrial substrates through cultivation on nutrient media and/or molecular methods. These fungi were identified to the species level based on morphological-cultural features or gene-sequence analysis. Analysis of the methods applied to study fungi in different substrates shows that a combination of multiple methods is optimal to study species composition. The taxonomic affiliation of the identified species to different fungal divisions is largely determined by habitat conditions and research methods. The largest number of species belongs to the divisions Ascomycota and Basidiomycota. The predominant ecological groups were saprotrophic and symbiotic fungi. The majority of 1324 discovered fungal species are known as cosmopolitan species. Approximately one-fifth of the fungi were identical between the Arctic and Antarctica, only a few species are known to be endemic to Antarctica or Arctic, and there are 1–6 identified bipolar species. Claims of endemism of polar-region fungi are relatively weakly supported.

真菌广泛分布于地球上,包括极地等极端恶劣的生境。这些栖息地的极端条件限制了能够在那里生活的生物数量,但有些真菌能够适应极地条件,并在养分循环中发挥重要作用。然而,有关真菌多样性、分布和功能的知识却很零散,研究真菌的方法也多种多样,结果往往难以比较。我们展示了在北极和南极洲进行真菌学研究的地点分布图,以及通过营养介质培养和/或分子方法在各种陆地基质上发现的菌丝真菌清单。根据形态文化特征或基因序列分析,对这些真菌进行了物种鉴定。对研究不同基质中真菌所用方法的分析表明,多种方法的结合是研究物种组成的最佳选择。已鉴定物种在分类学上隶属于不同的真菌部门在很大程度上取决于栖息地条件和研究方法。属于子囊菌目(Ascomycota)和担子菌目(Basidiomycota)的物种数量最多。主要的生态类群是嗜渍真菌和共生真菌。在已发现的 1324 个真菌物种中,大多数都是世界性物种。大约五分之一的真菌在北极和南极之间是相同的,只有少数物种是已知的南极或北极特有物种,还有 1-6 个已确定的两极物种。极地真菌特有性的说法得到的支持相对较弱。
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引用次数: 0
Trade-off between soil organic carbon sequestration and plant nutrient uptake in arbuscular mycorrhizal symbiosis 丛枝菌根共生中土壤有机碳固存与植物养分吸收之间的权衡
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-07-07 DOI: 10.1016/j.fbr.2024.100381
Sulaimon Basiru , Mohamed Hijri

Arbuscular mycorrhizal fungi (AMF) play a pivotal role in soil organic carbon (C) dynamics. AMF can channel C obtained from plants into the soil as labile and recalcitrant materials with contrasting impacts on soil organic carbon (SOC) reserves. Labile C supply, while increasing microbial biomass, can also elevate microbial respiration, leading to enhanced organic matter turnover. Conversely, the production of recalcitrant materials, including biomass and glomalin-related soil protein (GRSP) can promote SOC sequestration directly by acting as long-term C storage, strengthening soil aggregates, and promoting the formation of mineral-bound organic carbon. The contrasting impacts of AMF products on SOC often generate controversies regarding the role of AMF communities in C capture, especially under rising atmospheric CO2 concentrations. Emerging evidence suggests that distinct AMF phylogeny exhibit varying soil organic matter mobilization and symbiotic nutrient exchange abilities owing to their divergent life histories. However, we argue that resource use efficiency among AMF species significantly influences the phenotypic outcome of AM symbiosis, as well as their impacts on soil carbon dynamics. AMF functional traits favoring recalcitrant C substances including glomalin-related proteins and mineral-associated organic matter over labile C may positively impact SOC sequestration in the long-term. Whereas an AMF functional guild promoting plant growth through labile C (i.e., sugars) exudation may increase SOC turnover leading to lead to SOC loss. Although strong mutualist AMF may negatively impact SOC stocks, they can compensate for this trade-off by depositing fresh, newly fixed C and promoting plant photosynthesis. The ways in which this trade-off is offset can vary among different AMF species and community compositions, warranting further investigation.

丛枝菌根真菌(AMF)在土壤有机碳(C)动态中发挥着关键作用。丛枝菌根真菌可将从植物中获得的碳以易腐烂和难分解物质的形式导入土壤,对土壤有机碳(SOC)储备产生截然不同的影响。易溶碳的供应在增加微生物生物量的同时,也会提高微生物的呼吸作用,从而导致有机质周转率的提高。相反,包括生物量和胶霉素相关土壤蛋白质(GRSP)在内的难降解物质的产生可作为长期碳储存、强化土壤团聚体和促进矿物结合有机碳的形成,从而直接促进土壤有机碳的螯合。AMF产品对SOC的影响截然不同,这常常引发关于AMF群落在C捕获中的作用的争议,尤其是在大气CO2浓度上升的情况下。新的证据表明,由于生活史不同,不同的AMF系统发育表现出不同的土壤有机质动员和共生养分交换能力。然而,我们认为,AMF物种之间的资源利用效率极大地影响了AM共生的表型结果及其对土壤碳动态的影响。AMF的功能特性偏向于难降解的碳物质,包括胶蛋白相关蛋白和矿质相关有机物,而不是易溶的碳,这可能会对长期的SOC固碳产生积极影响。而通过易腐C(即糖)渗出促进植物生长的AMF功能区可能会增加SOC的周转,导致SOC流失。虽然强互生型 AMF 可能会对 SOC 储量产生负面影响,但它们可以通过沉积新的、新固定的 C 并促进植物光合作用来补偿这种权衡。在不同的 AMF 种类和群落组成中,抵消这种权衡的方式可能会有所不同,值得进一步研究。
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引用次数: 0
Navigating the labyrinth – Searching for mechanistic clues to explain the evolution of sequestrate Agaricales with labyrinthine internal chambers 迷宫导航--寻找解释具有迷宫式内腔的固着姬松茸进化的机理线索
IF 5.7 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.fbr.2024.100380
Andy R. Nilsen , Jonathan M. Plett , Tom W. May , Teresa Lebel , Chris M. Brown , David E.A. Catcheside , David A. Orlovich

Fungi exhibit a wide range of sporophore morphologies. Amongst the Agaricomycetes, sporophores include mushroom, coralloid, bracket and sequestrate forms. A striking observation is the repeated independent evolution of sequestrate forms, which have arisen more than 100 times from lineages where exposed spore-bearing tissues are the ancestral condition. Here we review the evolution of a particular sequestrate morphology in Agaricales, the labyrinthine sequestrate syndrome. We draw on knowledge of genetic mechanisms involved in sporophore development of agarics (mushrooms) and suggest potential genetic changes in relation to the alterations to pileus, lamellae and stipe during development. We discuss mechanisms that could give rise to the sequestrate syndrome.

真菌的孢子囊形态多种多样。在姬松茸真菌中,孢子囊包括蘑菇状、珊瑚状、支架状和固着状。一个引人注目的现象是螯合态的反复独立进化,它从以裸露孢子携带组织为祖先条件的品系中产生了 100 多次。在这里,我们回顾了姬松茸的一种特殊螯合形态--迷宫式螯合综合征--的进化过程。我们借鉴了姬松茸(蘑菇)孢子体发育过程中的遗传机制,并提出了与发育过程中绒毛、薄片和柄的改变有关的潜在遗传变化。我们讨论了可能导致螯合综合征的机制。
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引用次数: 0
Trichosporon asahii: Taxonomy, health hazards, and biotechnological applications Asahii 三孢子虫:分类、健康危害和生物技术应用
IF 6 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-05-30 DOI: 10.1016/j.fbr.2024.100369
Aude Commenges , Françoise Coucheney , Marie-Hélène Lessard , Djamel Drider , Steve Labrie

The genus Trichosporon includes yeasts that are naturally present within the human gastrointestinal tract, on the skin, and as part of the vaginal microbiota. This genus is an opportunistic pathogen, commonly found in fungal infections affecting immunocompromised individuals. The species Trichosporon asahii (T. asahii) causes the majority of trichosporonoses and is therefore widely studied, particularly in relation to its pathogenicity and its emerging resistance to antifungal drugs used to treat the disease. However, T. asahii also has important biotechnological applications, particularly its depolluting abilities and its bioproduction of flavor compounds (e.g., terpenes, C13-Norisoprenoids, C6 compounds, methyl hexanoate, and ethyl isovalerate) and antioxidant molecules. T. asahii also produces substances that inhibit certain contaminants found in dairy products, such as Kocuria rhizophila, Clostridium tyrobutyricum, and Salmonella enterica. Paradoxically, this yeast species also has some potential probiotic applications. This review aims to discuss and provide updates on the taxonomy, pathogenicity, and biotechnological relevance of T. asahii.

酵母菌属包括天然存在于人体胃肠道、皮肤和阴道微生物群中的酵母菌。该属是一种机会性病原体,常见于影响免疫力低下人群的真菌感染。该物种导致了大多数三孢子虫病,因此被广泛研究,特别是有关其致病性及其对用于治疗该疾病的抗真菌药物的新抗药性。不过,这种酵母菌也有重要的生物技术应用价值,特别是它的去污染能力和生物生产风味化合物(如萜烯、C13-去甲异戊烯、C6 化合物、己酸甲酯和异戊酸乙酯)和抗氧化分子。矛盾的是,这种酵母菌也有一些潜在的益生菌应用。本综述旨在讨论和更新......的分类、致病性和生物技术相关性。
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引用次数: 0
Editorial: Fungal Biology Reviews as a modern forum for mycological discussions 社论:真菌生物学评论》作为真菌学讨论的现代论坛
IF 6 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-05-18 DOI: 10.1016/j.fbr.2024.100370
Irina S. Druzhinina, Jan Dijksterhuis
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引用次数: 0
Functional insights into fungal F-box protein: From pathogenesis to sustainable economy 真菌 F-box 蛋白的功能研究:从致病机理到可持续经济
IF 6 2区 生物学 Q1 MYCOLOGY Pub Date : 2024-05-11 DOI: 10.1016/j.fbr.2024.100368
Surabhi Pal , Ankita Shree , Praveen Kumar Verma

Post-translational modifications (PTMs) alter the molecular structure and function of proteins while tightly regulating protein turnover and activity. Eukaryotes exhibit a wide range of PTMs, including phosphorylation, ubiquitination, acetylation, glycosylation, methylation, lipidation, and palmitoylation. Ubiquitination, facilitates the degradation of specific substrates through PTMs. This process heavily relies on the SCF complex (SKP1-Cullin-F-box protein) a type of E3 ubiquitin ligase, which plays a crucial role in the recruitment of target substrates for ubiquitination. Apart from substrate degradation, F-box proteins in pathogenic fungi are involved in diverse cellular processes essential for fungal growth and virulence. In this review article, we summarize the functions of various F-box proteins in pathogenic fungi, discussing their roles in cellular functions such as pathogenicity during host infection, transcription and cell cycle progression, endocytic recycling, sexual reproduction, mitochondrial connectivity, and maintenance of circadian rhythm. Furthermore, recent studies have revealed a novel function of fungal F-box proteins in biofuel production via CAZymes, highlighting their industrial significance. This comprehensive review aims to enhance our understanding of the emerging role of F-box proteins in host-pathogen interactions, and it holds broader significance for the scientific community, stimulating new discussions and future investigations in this field.

翻译后修饰(PTMs)改变蛋白质的分子结构和功能,同时严格调控蛋白质的周转和活性。真核生物的 PTM 种类繁多,包括磷酸化、泛素化、乙酰化、糖基化、甲基化、脂化和棕榈酰化。泛素化通过 PTM 促进特定底物的降解。这一过程在很大程度上依赖于 SCF 复合物(SKP1-Cullin-F-box 蛋白),它是一种 E3 泛素连接酶,在招募目标底物进行泛素化方面起着至关重要的作用。除底物降解外,病原真菌中的 F-box 蛋白还参与了对真菌生长和毒力至关重要的多种细胞过程。在这篇综述文章中,我们总结了病原真菌中各种 F-box 蛋白的功能,讨论了它们在宿主感染期间的致病性、转录和细胞周期进展、内细胞循环、有性生殖、线粒体连接和维持昼夜节律等细胞功能中的作用。此外,最近的研究揭示了真菌 F-box 蛋白通过 CAZymes 在生物燃料生产中的新功能,凸显了其工业意义。这篇综合性综述旨在加深我们对 F-box 蛋白在宿主与病原体相互作用中的新作用的理解,对科学界具有更广泛的意义,激发了这一领域的新讨论和未来研究。
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引用次数: 0
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