Aetokthonos hydrillicola is a toxic epiphytic cyanobacterium often associated with invasive water thyme (Hydrilla), Hydrilla verticillata. A. hydrillicola can produce a potent brominated neurotoxin, aetokthonotoxin (AETX), and a cytotoxic dolastatin analog, aetokthonostatin (AEST). The continued expansion of invasive Hydrilla across the United States, including New York State (NYS) waters, has highlighted the need for an accurate method to detect A. hydrillicola and its toxins due to the potential public health implications. A fast and accurate method for detecting A. hydrillicola and its toxins in aquatic plant materials was developed by targeting the rRNA ITS region (ITS1, ITS2) and biosynthetic gene clusters of AETX (aetxE, aetxA) and AEST (aestF, aestK). Samples from Southeastern United States and Southeastern NYS lakes and ponds were analyzed using the developed RT-PCR assays. Hydrilla from Lake Sebago tested positive for AEST genes, but was negative for both ITS and AETX genes, despite A. hydrillicola being confirmed via light microscopy. This is consistent with toxin analysis via LCMS finding no measurable AETX. The lack of AETX genes and the inability to amplify the Lake Sebago A. hydrillicola using current ITS primers/probes suggests that this is likely a different genetic variant. This data also suggests that AEST genes are likely conserved across genetic variants of A. hydrillicola. These RT-PCR assays will allow for an increased throughput of lakes surveyed for the presence of A. hydrillicola and its toxins, enabling environmental managers to make swift decisions regarding the prevention or reduction of impacts on wildlife and public health.
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