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Soybean Seeds (Glycine max L.) Extract Against Cytokine Storm in ARDS Rat Model through Inhibiting Inflammation Marker 大豆种子(甘氨酸max L.)通过抑制炎症标志物抑制ARDS大鼠模型细胞因子风暴
Q3 Agricultural and Biological Sciences Pub Date : 2023-05-12 DOI: 10.4308/hjb.30.4.779-788
D. Priyandoko, W. Widowati, Ervi Afifah, Ika Adhani Sholihah, C. Wahyuni, C. Wijayanti, R. Rizal
Several studies have suggested that "cytokine storms" are significant causes of the severity of COVID-19. Controlling and inhibiting the cytokine storm in COVID-19 could prevent the spread of COVID-19 and saves patient lives. Soybean (Glycine max L.) is known to have various biological activities. This study aims to examine bioactive compounds in SSE and the effect of SSE on the ARDS rats model. A total of 25 Sprague Dawley Lipopolysaccharide-induced rats were used. Determination of serum IL-1β, IL-12, and lung TNF-α levels was performed by ELISA method. NF-κB and IFN-γ expression were determined by the qRTPCR method. IL-6 expressions were analyzed by immunohistochemistry assay. The bleeding, inflammation, and alveolus collapse score were analyzed using the HE staining method. The results showed that SSE could decrease the level of IL-1β, IL-12, TNF-α, IL-6, NF-kB, and IFN-γ and improve the bleeding, inflammation, and alveolus score in the lung. SSE could decrease the pro-inflammatory cytokines and improve lung condition in ARDS rats model.
几项研究表明,“细胞因子风暴”是导致新冠肺炎严重程度的重要原因。控制和抑制新冠肺炎中的细胞因子风暴可以防止新冠肺炎的传播并挽救患者的生命。大豆(Glycine max L.)具有多种生物学活性。本研究旨在检测SSE中的生物活性化合物以及SSE对ARDS大鼠模型的影响。使用总共25只Sprague-Dawley脂多糖诱导的大鼠。ELISA法测定血清IL-1β、IL-12和肺TNF-α水平。κB和IFN-γ的表达。免疫组化法检测IL-6的表达。采用HE染色法分析出血、炎症和肺泡塌陷评分。结果表明,SSE可降低IL-1β、IL-12、TNF-α、IL-6、NF-kB和IFN-γ的水平,改善肺出血、炎症和肺泡评分。SSE可降低ARDS大鼠模型的促炎细胞因子,改善肺功能。
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引用次数: 0
UHPLC-Q-Orbitrap HRMS-based Untargeted Metabolomics of Sida rhombifolia Leaves and Stem Extracts 基于UHPLC-Q-Orbitrap HRMS的菱叶和茎提取物的非靶向代谢组学
Q3 Agricultural and Biological Sciences Pub Date : 2023-05-11 DOI: 10.4308/hjb.30.4.770-778
Alfi Hudatul Karomah, M. Rafi, D. Septaningsih, A. Ilmiawati, Utami Dyah Safitri, N. Aminah, M. Insanu, A. Rohman
Sida rhombifolia, also known as sidaguri in Indonesia, is a medicinal plant commonly used as a herbal medicine because of its metabolite and biological activities. One of the several factors that affect plant metabolite composition and concentration is the use of plant parts. In this study, the experiment aimed to identify the metabolite profile in the leaves and stem extracts of S. rhombifolia using UHPLC-Q-Orbitrap HRMS-based untargeted metabolomics. The samples were distinguished by principal component analysis (PCA). Extraction of metabolites was conducted by sonication for approximately 30 min with 70% ethanol as the extraction solvent; 28 metabolites were identified. Seven metabolites were identified only in the leaves, three were identified only in the stems, and 18 other metabolites were identified in both the leaves and stems. These metabolites were categorized as flavonoids, triterpenoids, alkaloids, coumarins, phenolic aldehydes, phenolic acids, ecdysteroids, fatty acids, and monoterpene lactones. Based on the classification results, PCA grouped the leaves and stem extracts of S. rhombifolia using the peak area variables of the identified metabolites.
菱叶西达(Sida rhombifolia),在印度尼西亚也被称为西达古里(sidaguri),是一种药用植物,由于其代谢产物和生物活性,通常被用作草药。影响植物代谢产物组成和浓度的几个因素之一是植物部分的使用。在本研究中,本实验旨在使用基于UHPLC-Q-Orbitrap HRMS的非靶向代谢组学鉴定菱叶和茎提取物中的代谢产物谱。通过主成分分析(PCA)对样品进行了鉴别。代谢物的提取通过用70%乙醇作为提取溶剂超声处理约30分钟来进行;鉴定出28种代谢产物。仅在叶片中鉴定出7种代谢产物,仅在茎中鉴定出3种,在叶片和茎中均鉴定出18种其他代谢产物。这些代谢产物被分类为黄酮类、三萜类、生物碱、香豆素、酚醛、酚酸、蜕皮甾体、脂肪酸和单萜内酯。基于分类结果,主成分分析使用已鉴定代谢物的峰面积变量对菱叶的叶和茎提取物进行分组。
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引用次数: 0
First Records of Male and Swollen Females of Two Species of Achlysiella (Nematoda: Pratylenchidae) 两种Achlysiella雄性和肿胀雌性的首次记录(线虫目:Pratylenchidae)
Q3 Agricultural and Biological Sciences Pub Date : 2023-05-10 DOI: 10.4308/hjb.30.4.757-769
A. Gafur, M. Hodda
Males and swollen mature females of Achlysiella trilineata and Achlysiella magniglans were discovered for the first time in Australia. These life stages confirmed that both species show well-marked sexual dimorphism in the anterior region of the body, with the males having reduced cephalic frameworks, stylets, and oesophagi. Males of A. magniglans displayed an extreme reduction in the style such that only the cone could be seen, and the rest of the esophagus was barely visible. In both species, the swollen females had postmedian vulvae, and the anterior branch of the ovary was longer than the posterior branch. In A. magniglans, the disparity in length was more pronounced, and the vulva was more posterior. The finding of swollen females confirmed the classification of both species in Achlysiella rather than Radopholus. Vermiform females of both species have large dorsal oesophageal glands and short ovaries. Justifiably, other species of Radopholus with these latter features (R. brevicaudatus, R. capitatus, and R. vacuus) should also be moved to Achlysiella.
在澳大利亚首次发现了三叶Achlysiella和magniglans Achlysiella的雄性和肿胀的成熟雌性。这些生命阶段证实了这两个物种在身体前部都表现出明显的两性二态性,雄性的头框、花柱和食道都减少了。magniglans的雄性显示出极度缩小的风格,以至于只能看到锥,而食道的其余部分几乎看不到。在这两个物种中,肿胀的雌性都有后正中外阴,卵巢的前支比后支长。在magniglans中,长度差异更明显,外阴更靠后。肿胀雌性的发现证实了这两个物种都属于Achlysiella,而不是Radopholus。两种的蚓状雌性都有大的背侧食道腺和短的卵巢。有理由认为,其他具有后一种特征的Radopholus种(R. brevicaudatus、R. capitatus和R. vacuus)也应归入Achlysiella。
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引用次数: 0
Phylogeographic Insights of Five Co-Habiting Grouper Species in The Indo-Malaya Archipelago 印度-马来亚群岛五种共栖石斑鱼的系统地理学研究
Q3 Agricultural and Biological Sciences Pub Date : 2023-05-02 DOI: 10.4308/hjb.30.4.743-756
N. Fadli, A. Damora, Z. Muchlisin, I. Dewiyanti, M. Ramadhaniaty, N. M. Razi, J. Jamaluddin, E. Macusi, M. N. Siti-Azizah
Understanding the patterns of genetic diversity of species and precise stock identification are important in fisheries conservation management. However, studies on genetic diversity, connectivity, population structure, and gene flow of groupers within the Indo-Malaya Archipelago (IMA) waters are limited. The objective of the present study was to examine the phylogeographic patterns of the family Epinephelidae in IMA waters based on a parallel study of five selected species utilizing the mitochondrial COI. The grouper species were: areolate grouper (Epinephelus areolatus), blacktip grouper (Epinephelus fasciatus), six-bar grouper (Epinephelus sexfasciatus), blue-lined hind (Cephalopholis formosa), and white-edged lyretail (Variola albimarginata). Specimens were obtained from fish landing sites and fish markets from 23 locations throughout the IMA waters. This study showed genetic structuring for two species (Epinephelus areolatus and Variola albimarginata) but genetic homogeneity for the other three investigated species across IMA. Various geological and demographic histories, local and regional oceanographic features, and biological characteristics are hypothesized to shape the present genetic pattern of each species across the IMA waters. The establishment of effective international cooperation is encouraged to manage grouper species stocks in this region.
了解物种遗传多样性模式和准确种群识别对渔业养护管理具有重要意义。然而,对印度-马来亚群岛(IMA)水域石斑鱼的遗传多样性、连通性、种群结构和基因流动的研究有限。本研究的目的是在利用线粒体COI对5个选定物种进行平行研究的基础上,研究IMA水域中Epinephelidae科的系统地理模式。石斑鱼的种类主要有:梨形石斑鱼(Epinephelus areolatus)、黑头石斑鱼(Epinephelus fasciatus)、六棱石斑鱼(Epinephelus sexfasciatus)、蓝纹石斑鱼(Cephalopholis formosa)和白边石斑鱼(Variola albimarginata)。在IMA水域的23个地点的鱼上岸点和鱼市场获得了标本。本研究发现两种石斑鱼(Epinephelus areolatus和varola albimarginata)具有遗传结构,而其他三种石斑鱼在IMA中具有遗传同质性。各种地质和人口历史、当地和区域海洋学特征以及生物特征被假设为塑造了IMA水域中每个物种目前的遗传模式。鼓励建立有效的国际合作来管理本区域的石斑鱼种群。
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引用次数: 0
Quercetin-Containing Extract from Clove Syzygium aromaticum L. Endophytic Bacteria, Fictibacillus phosphorivorans P1U2, Exhibits Antimutagenic Activity in Yeast Saccharomyces cerevisiae 含槲皮素的丁香香菇内生细菌P1U2对酵母的抗诱变活性研究
Q3 Agricultural and Biological Sciences Pub Date : 2023-04-17 DOI: 10.4308/hjb.30.4.734-742
Nadila Fany Ashafani, R. Astuti, S. Listiyowati, Irmanida Batubara
Metabolites from clove (Syzygium aromaticum L.) have been extensively studied for various pharmacological uses, including quercetin. Endophytic bacteria isolated from plant tissues can produce similar secondary metabolites as their host plants. However, little is known about the antioxidant activity of the endophytic bacterial extract from clove leaves. Amongst the potential bacterial groups, the genera of Bacillus have been widely studied as a source of antioxidants. Thus, this study, we examined the potential antioxidant properties of Bacillus sp., isolated from clove leaves. We have successfully isolated ten endophytic bacteria, of which only one isolate (P1U2) was found non-pathogenic based on a hemolytic assay. Based on the 16S rRNA sequence, P1U2 shared the highest similarity to Fictibacillus phosphorivorans. The extract of extracellular metabolites of P1U2 contains quercetin compounds, based on LC-MS analysis. The results of the antioxidant activity test using the DPPH assay showed that the P1U2 extract had an IC50 value of 161 mg/ml. The supplementation of the extract on culture media reduced the ability of S. cerevisiae to decolorize mutagen malachite green and increased cell viability. Furthermore, the addition of 161 ppm extract was able to counteract UV mutagens effects of UV exposure and toxicity of malachite green, significantly increasing the growth of S. cerevisiae. Suggesting the bioactivity of the extract in combating mutagens. To the best of our knowledge, this is the first study to report a quercetin-rich extract derived from endophytic bacteria, F. phosphorivorans. Thus, further study is required to optimize the synthesis of quercetin from isolate P1U2.
丁香(Syzygium aromaticum L.)的代谢物已被广泛研究用于各种药理用途,包括槲皮素。从植物组织中分离出来的内生细菌可以产生与宿主植物相似的次生代谢物。然而,人们对丁香叶内生细菌提取物的抗氧化活性知之甚少。在潜在的细菌群中,芽孢杆菌属作为抗氧化剂的来源已被广泛研究。因此,在这项研究中,我们检测了从丁香叶中分离的芽孢杆菌的潜在抗氧化特性。我们已经成功地分离出10种内生细菌,其中只有一种(P1U2)根据溶血试验被发现是非致病性的。基于16S rRNA序列,P1U2与嗜磷芽孢杆菌的相似性最高。经LC-MS分析,P1U2细胞外代谢产物提取物中含有槲皮素类化合物。DPPH法测定P1U2提取物的抗氧化活性,IC50值为161 mg/ml。在培养基中添加提取物降低了酿酒酵母对诱变剂孔雀石绿的脱色能力,提高了细胞活力。此外,添加161 ppm提取物能够抵消紫外线照射和孔雀石绿毒性的紫外线诱变效应,显著促进酿酒酵母的生长。提示提取物具有抗诱变剂的生物活性。据我们所知,这是第一次报道从内生细菌F. phosphorivorans中提取的富含槲皮素的提取物。因此,从分离物P1U2中优化槲皮素的合成还需进一步研究。
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引用次数: 0
An Extensive Coverage Anoa Distribution Modelling in Sulawesi Using Maximum Entropy 使用最大熵的苏拉威西大面积覆盖Anoa分布模型
Q3 Agricultural and Biological Sciences Pub Date : 2023-04-17 DOI: 10.4308/hjb.30.4.716-724
L. M. Jaelani, Benedict, Diah Ardiani, M. P. Tambunan, M. Indrawan, Andri A. Wibowo
As an endangered species, Anoa (Bubalus depressicornis and Mountain Bubalus quarlesi) inhabiting the Sulawesi island requires proper conservation both in and out of their native habitat. The study of anoa habitat is mainly conducted through field studies based on firsthand observations of anoa appearance, footprints, or excrement or through social surveys from residents who saw it directly. The studies are carried out specifically in a particular area with a relatively narrow. However, in practice, this method has limitations, such as the research location determined based on the possibility of anoa, limited research area, and inefficient use of resources. Therefore, this study aimed to model the potential habitat of anoa in the whole of Sulawesi island. This study was based on physical and environmental independent variables such as DEM, surface slope, LST, NDVI, and access to inland water, as well as in-situ species distribution retrieved from scientific papers and reports. This study discovered the likely anoa distribution on Sulawesi island, both inside and outside of its native habitat. LST is the most important independent variable in determining habitat suitability, accounting for 80% of the total, followed by water (15.3%), NDVI (2.9%), DEM (1.6%), and slope (0.3%).
作为一种濒危物种,居住在苏拉威西岛的Anoa(Bubalus depressicornis和Mountain Bubalus quarlesi)需要在其原生栖息地内外进行适当的保护。对anoa栖息地的研究主要是通过实地研究进行的,实地研究基于对anoa外观、足迹或排泄物的第一手观察,或者通过直接看到它的居民的社会调查。这些研究是专门在一个相对狭窄的特定领域进行的。然而,在实践中,这种方法有局限性,如根据anoa的可能性确定研究地点,研究区域有限,资源利用效率低下。因此,本研究旨在对整个苏拉威西岛的无尾蟾蜍潜在栖息地进行建模。这项研究基于物理和环境自变量,如DEM、地表坡度、LST、NDVI和内陆水的获取,以及从科学论文和报告中检索到的原位物种分布。这项研究在苏拉威西岛上发现了可能的anoa分布,包括其原生栖息地内外。LST是决定栖息地适宜性的最重要自变量,占总数的80%,其次是水(15.3%)、NDVI(2.9%)、DEM(1.6%)和坡度(0.3%)。
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引用次数: 1
The Patterns of Restriction Fragment of Several Enzymes to Distinguish Toxoplasma gondii Isolates Virulent and Avirulent Strains using GRA1 and GRA7 Genetic Marker 利用GRA1和GRA7遗传标记区分刚地弓形虫毒株和无毒株的几种酶限制性片段模式
Q3 Agricultural and Biological Sciences Pub Date : 2023-04-17 DOI: 10.4308/hjb.30.4.725-733
F. Ekawasti, Eko Setyo Purwanto, Farlin Nepho, D. A. Kurniawati, D. Subekti, R. Damayanti, S. Sa’diah, U. Cahyaningsih
Toxoplasma gondii pathogenicity depends on the type derived from a clonal population. A genetic analysis of the locus has been carried out to determine the different genotypes of T. gondii (strain types I, II, and III) that are associated with human toxoplasmosis. The several genotypes of T. gondii (strain types I, II, and III) that are linked to human toxoplasmosis have been identified through genetic study of the locus. In this investigation, PCR-RFLP was found to be a useful, and simple method genotypic characterization. The objective of this study was to genotyping characterize T. gondii RH and BEV strains isolates by PCR-RFLP using several restriction enzymes. T. gondii tachyzoite DNA was extracted and amplified by PCR using dense granule genetic markers (GRA1 and GRA7) designed with Primer3plus. The amplification were digested using the restriction enzymes. The PCR-RFLP amplified dense granule products was used to classify strains into two genotypes of T. gondii (virulent and avirulent). The results demonstrated that the RFLP patterns of the GRA1 and GRA7 gene area digested by DdeI, MvaI, HinfI, RsaI, and Sau96I enzymes can be used to identify virulent or avirulent strains of T. gondii. Toxoplasma gondii RH and BEV strain produced different digestion product which can be used to distinguished the strains.
刚地弓形虫的致病性取决于克隆种群衍生的弓形虫类型。对该位点进行了遗传分析,以确定与人类弓形虫病相关的不同弓形虫基因型(菌株I型、II型和III型)。通过对弓形虫位点的遗传研究,已确定与人类弓形虫病相关的几种弓形虫基因型(菌株I型、II型和III型)。本研究发现,PCR-RFLP是一种有效、简便的基因型鉴定方法。本研究采用PCR-RFLP方法对弓形虫RH和BEV分离株进行基因分型。采用Primer3plus设计的密集颗粒遗传标记GRA1和GRA7,提取弓形虫速殖子DNA并进行PCR扩增。扩增物用限制性内切酶消化。利用PCR-RFLP扩增的致密颗粒产物将弓形虫分为两种基因型(强毒株和无毒株)。结果表明,经DdeI、MvaI、HinfI、RsaI和Sau96I酶切的GRA1和gr7基因区RFLP图谱可用于弓形虫毒株和非毒株的鉴定。刚地弓形虫RH和BEV菌株产生的消化产物不同,可作为区分菌株的依据。
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引用次数: 0
A Combination of Anadara nodifera Shell and Milkfish Thorns Powder Effectively Promote Springiness Index, Serum Testosterone, and Breast Muscle Testosterone in Bangkok Rooster Anadara nodifera Shell和Milkfish Thorns Powder的组合有效促进曼谷公鸡的弹性指数、血清睾酮和胸肌睾酮
Q3 Agricultural and Biological Sciences Pub Date : 2023-04-12 DOI: 10.4308/hjb.30.4.701-710
Akhmad Abror As Sidiqi, C. M. Airin, Sarmin Sarmin, P. Astuti
Aromatase blocker effectively promotes testosterone, which improves muscle performance and protein synthesis. Considerable muscle strength in Bangkok rooster is the outcome of testosterone activity. Clamshell contains aromatase blocker substances, while fishbone possesses a high amount of protein. This research aimed to evaluate the clamshell and fishbone combination potency towards testosterone levels and muscle performance in Bangkok roosters. This study employed 18 Bangkok roosters under 35 days of treatment. The rooster groups consisted of control (P0, n = 6); clamshell-fishbone (P1, n = 6): clamshell (6.6 gram/day) + fishbone (3.3 gram/day); fishbone (P2, n = 6): fishbone (3.3 gram/day). The blood was collected once every seven days. Enzyme immunoassay showed the highest serum and muscle testosterone levels in P1 (p<0.05). Immunohistochemistry presented the most and broadest myofiber and the highest proliferation activity in P1 (p<0.05). The texture analysis showed the topmost springiness index in P1 (p<0.05). Aromatase blockers in clamshell and protein in fishbone improve testosterone and muscle performance in Bangkok roosters.
芳香酶阻滞剂有效促进睾酮,提高肌肉性能和蛋白质合成。曼谷公鸡相当大的肌肉力量是睾酮活动的结果。蛤壳含有芳香酶阻滞剂,而鱼骨含有大量的蛋白质。本研究旨在评价蛤壳和鱼骨组合对曼谷公鸡睾酮水平和肌肉性能的影响。本研究选用18只治疗35 d的曼谷公鸡。鸡组为对照组(P0, n = 6);翻贝-鱼骨(P1, n = 6):翻贝(6.6克/天)+鱼骨(3.3克/天);鱼骨(P2, n = 6):鱼骨(3.3克/天)。每七天采集一次血。酶免疫分析显示P1组血清和肌肉睾酮水平最高(p<0.05)。免疫组化显示P1的肌纤维最多、最宽,增殖活性最高(p<0.05)。织构分析显示,P1弹性指数最高(p<0.05)。蛤壳中的芳香酶阻滞剂和鱼骨中的蛋白质可提高曼谷公鸡的睾酮水平和肌肉性能。
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引用次数: 0
Morphological Alterations of Fish Erythrocytes as Their Response to Environmental Conditions 鱼类红细胞对环境条件的形态学改变
Q3 Agricultural and Biological Sciences Pub Date : 2023-04-12 DOI: 10.4308/hjb.30.4.711-715
D. H. Quyet, P. T. Dung
Fish bodies respond to changes in environmental conditions in various ways and degrees. Seven fish species were collected from three study locations, including two nearshore sites (Ha Tinh province and Nha Trang city, Khanh Hoa province) and one offshore site (Toc Tan island, Khanh Hoa province) to evaluate alterations in erythrocyte morphology under certain environmental conditions. Heavy metal concentrations at all study sites were analyzed and met the acceptable technical criteria for each site. Fish blood samples were taken from the tail veins, anticoagulated with heparin, and stained with Giemsa stain. The blood cell morphological study was performed using an optical microscope. The results revealed two types of morphological abnormalities of fish erythrocytes, including nuclear deformation and nuclear-matter distribution.
鱼的身体以不同的方式和程度对环境条件的变化作出反应。在三个研究地点收集了7种鱼类,包括两个近岸地点(河静省和庆和省芽庄市)和一个近海地点(庆和省Toc Tan岛),以评估特定环境条件下红细胞形态的变化。对所有研究地点的重金属浓度进行了分析,并达到了每个地点可接受的技术标准。取尾静脉鱼血,肝素抗凝,吉姆萨染色。在光学显微镜下进行血细胞形态学研究。结果显示鱼类红细胞形态异常包括核变形和核物质分布两种类型。
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引用次数: 0
Bird Sounds Psychological Restorative Effect on The Visitors of Bogor Botanical Garden 鸟叫声对茂物植物园游客的心理修复作用
Q3 Agricultural and Biological Sciences Pub Date : 2023-04-11 DOI: 10.4308/hjb.30.4.692-700
Yuriko Asahiro, A. Sunkar, Jarwadi Budi Hernowo
Stress can be defined as psychological and physical tension caused by physical, emotional, social, economic, and occupational, events, or experiences that are difficult to manage or endure. Bird sounds can be a potential solution to reduce stress levels. This study aimed to analyze the effect of bird sounds as a stress restorative on Bogor Botanical Garden visitors. A survey of 100 visitors of Bogor Botanical Garden was conducted based on the Perceived Stress Scale and Perceived Restorativeness Soundscape Scale. Data on respondent characteristics were analyzed using descriptive analysis, the relationship between stress levels and perceived stress restorative effect of bird sound was analyzed using Pearson correlation analysis. The analysis showed that 78% of respondents had moderate to high perceived stress levels and 98% of respondents rated the degree of restoration from bird sounds to be moderate to high. The correlation analysis revealed a negative relationship between the stress level and bird sounds' perceived restorative effect. The older the respondents and the more frequently they visited Bogor Botanical Garden, the higher the perceived stress restorative effect from bird sound.
压力可以定义为由难以管理或忍受的身体、情感、社会、经济和职业、事件或经历引起的心理和身体紧张。鸟叫声可能是降低压力水平的潜在解决方案。本研究旨在分析鸟叫声作为一种压力恢复对茂物植物园游客的影响。基于感知压力量表和感知恢复性声景量表对茂物植物园的100名游客进行了调查。采用描述性分析法对受访者特征数据进行分析,采用Pearson相关分析法分析压力水平与鸟叫声感知压力恢复效果之间的关系。分析显示,78%的受访者具有中度至高度的感知压力水平,98%的受访者将鸟叫声的恢复程度评为中度至高度。相关分析表明,压力水平与鸟叫声的恢复效果呈负相关。受访者年龄越大,参观茂物植物园的频率越高,鸟叫声的压力恢复效果就越高。
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引用次数: 0
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HAYATI Journal of Biosciences
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