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Knockdown of tyrosine hydroxylase gene affects larval survival, pupation and adult eclosion in Plagiodera versicolora. 敲除酪氨酸羟化酶基因会影响 Plagiodera versicolora 的幼虫存活、化蛹和成虫羽化。
IF 2.3 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-29 DOI: 10.1111/imb.12967
Xiaolong Liu, Xin Wang, Qi Zhang, Longji Ze, Hainan Zhang, Min Lu

In insects, tyrosine hydroxylase (TH) plays essential roles in cuticle tanning and cuticle pigmentation. Plagiodera versicolora (Coleoptera: Chrysomelidae) is a leaf-eating forest pest in salicaceous trees worldwide. However, the function of PverTH in P. versicolora is still unknown. In this study, we obtained a PverTH gene from transcriptome analysis. The expression analysis of PverTH showed that the highest expression was found in epidermis of larvae. In this study, we used RNA interference (RNAi) technology to knockdown the PverTH gene. The results showed that ingestion of dsTH led to cuticle coloration became lighter in larvae, pupae and adults. Knockdown of PverTH gene inhibited larval growth, and consequently caused higher mortality. In addition, RNAi of TH disrupted the cuticle tanning, caused lower pupation rate, lower eclosion rate and higher deformity rate. This study indicates that PverTH is vital for the cuticular pigments and cuticle tanning. Moreover, this research suggested that the development of PverTH gene as a potential target gene to control P. versicolora.

在昆虫中,酪氨酸羟化酶(TH)在角质层鞣制和角质层色素沉着中发挥着重要作用。Plagiodera versicolora(鞘翅目:蝶形目)是一种食叶害虫,分布于世界各地的盐生树木中。然而,PverTH 在 P. versicolora 中的功能尚不清楚。本研究通过转录组分析获得了 PverTH 基因。PverTH 的表达分析表明,其在幼虫表皮中的表达量最高。本研究采用 RNA 干扰(RNAi)技术敲除 PverTH 基因。结果表明,摄入dsTH会导致幼虫、蛹和成虫的角质层颜色变浅。PverTH基因的敲除抑制了幼虫的生长,从而导致死亡率升高。此外,TH 的 RNAi 会破坏角质层的鞣制,导致化蛹率降低、羽化率降低和畸形率升高。该研究表明,PverTH对角质层色素和角质层鞣制至关重要。此外,该研究还建议将 PverTH 基因开发为控制 P. versicolora 的潜在靶基因。
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引用次数: 0
The quest for the best target genes for RNAi-mediated pest control. 寻找 RNAi- 媒介害虫控制的最佳目标基因。
IF 2.3 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-25 DOI: 10.1111/imb.12966
Doga Cedden, Gregor Bucher

RNA interference (RNAi) has emerged as an eco-friendly alternative to classic pesticides for pest control. This review highlights the importance of identifying the best target genes for RNAi-mediated pest control. We argue that the knowledge-based approach to predicting effective targets is limited by our current gaps of knowledge, making unbiased screening a superior method for discovering the best target processes and genes. We emphasize the recent evidence that suggests targeting conserved basic cellular processes, such as protein degradation and translation, is more effective than targeting the classic pesticide target processes. We support these claims by comparing the efficacy of previously reported RNAi target genes and classic insecticide targets with data from our genome-wide RNAi screen in the red flour beetle, Tribolium castaneum. Finally, we provide practical advice for identifying excellent target genes in other pests, where large-scale RNAi screenings are typically challenging.

RNA 干扰(RNAi)已成为害虫控制中传统杀虫剂的环保型替代品。本综述强调了确定 RNAi 介导的害虫控制的最佳靶基因的重要性。我们认为,基于知识预测有效靶标的方法受限于我们目前的知识空白,因此无偏见筛选是发现最佳靶标过程和基因的上佳方法。我们强调,最近有证据表明,以保守的基本细胞过程(如蛋白质降解和翻译)为靶标比以经典的杀虫剂靶标过程为靶标更为有效。我们将以前报道的 RNAi 靶基因和传统杀虫剂靶基因的功效与我们在红面粉甲虫(Tribolium castaneum)中进行的全基因组 RNAi 筛选数据进行了比较,从而支持这些说法。最后,我们为在其他害虫中识别优秀的靶基因提供了实用建议,因为在其他害虫中进行大规模 RNAi 筛选通常具有挑战性。
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引用次数: 0
Alternative double strand break repair pathways shape the evolution of high recombination in the honey bee, Apis mellifera. 替代性双链断裂修复途径决定了蜜蜂高重组的进化。
IF 2.6 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-19 DOI: 10.1111/imb.12961
Bertrand Fouks,Katelyn J Miller,Caitlin Ross,Corbin Jones,Olav Rueppell
Social insects, particularly honey bees, have exceptionally high genomic frequencies of genetic recombination. This phenomenon and underlying mechanisms are poorly understood. To characterise the patterns of crossovers and gene conversion in the honey bee genome, a recombination map of 187 honey bee brothers was generated by whole-genome resequencing. Recombination events were heterogeneously distributed without many true hotspots. The tract lengths between phase shifts were bimodally distributed, indicating distinct crossover and gene conversion events. While crossovers predominantly occurred in G/C-rich regions and seemed to cause G/C enrichment, the gene conversions were found predominantly in A/T-rich regions. The nucleotide composition of sequences involved in gene conversions that were associated with or distant from crossovers corresponded to the differences between crossovers and gene conversions. These combined results suggest two types of DNA double-strand break repair during honey bee meiosis: non-canonical homologous recombination, leading to gene conversion and A/T enrichment of the genome, and the canonical homologous recombination based on completed double Holliday Junctions, which can result in gene conversion or crossover and is associated with G/C bias. This G/C bias may be selected for to balance the A/T-rich base composition of eusocial hymenopteran genomes. The lack of evidence for a preference of the canonical homologous recombination for double-strand break repair suggests that the high genomic recombination rate of honey bees is mainly the consequence of a high rate of double-strand breaks, which could in turn result from the life history of honey bees and their A/T-rich genome.
社会性昆虫,尤其是蜜蜂,基因组的基因重组频率特别高。人们对这一现象及其内在机制知之甚少。为了描述蜜蜂基因组中交叉和基因转换的模式,我们通过全基因组重测序生成了 187 个蜜蜂兄弟的基因重组图谱。重组事件分布不均,没有许多真正的热点。相移之间的道长度呈双峰分布,表明存在不同的交叉和基因转换事件。交叉主要发生在富含 G/C 的区域,似乎会导致 G/C 富集,而基因转换则主要发生在富含 A/T 的区域。与交叉相关或远离交叉的基因转换序列的核苷酸组成与交叉和基因转换之间的差异相对应。这些综合结果表明,蜜蜂减数分裂过程中有两种类型的DNA双链断裂修复:一种是非规范同源重组,导致基因转换和基因组A/T富集;另一种是规范同源重组,基于完成的双霍利迪连接,可导致基因转换或交叉,并与G/C偏向有关。这种 G/C 偏向可能是为了平衡社会性膜翅目昆虫基因组中富含 A/T 的碱基组成而选择的。没有证据表明双链断裂修复偏好同源重组,这表明蜜蜂的高基因组重组率主要是高双链断裂率的结果,而高双链断裂率又可能是蜜蜂的生活史及其富含A/T-的基因组的结果。
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引用次数: 0
Efficient CRISPR/Cas9-mediated genome editing in the European corn borer, Ostrinia nubilalis. 欧洲玉米螟(Ostrinia nubilalis)中高效的 CRISPR/Cas9 介导的基因组编辑。
IF 2.6 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-18 DOI: 10.1111/imb.12959
Jacob N Dayton,Tammy T Tran,Elisa Saint-Denis,Erik B Dopman
The European corn borer (Ostrinia nubilalis) is an agricultural pest and burgeoning model for research on speciation, seasonal adaptation and insect resistance management. Although previous work in O. nubilalis has identified genes associated with differences in life cycle, reproduction, and resistance to Bt toxins, the general lack of a robust gene-editing protocol for O. nubilalis has been a barrier to functional validation of candidate genes. Here, we demonstrate an efficient and practical methodology for heritable gene mutagenesis in O. nubilalis using the CRISPR/Cas9 genome editing system. Precise loss-of-function (LOF) mutations were generated at two circadian clock genes, period (per) and pigment-dispersing factor receptor (pdfr), and a developmental gene, prothoracicotropic hormone (ptth). Precluding the need for a visible genetic marker, gene-editing efficiency remained high across different single guide RNAs (sgRNA) and germline transmission of mutations to F1 offspring approached 100%. When single or dual sgRNAs were injected at a high concentration, gene-specific phenotypic differences in behaviour and development were identified in F0 mutants. Specifically, F0 gene mutants demonstrated that PER, but not PDFR, is essential for normal timing of eclosion. PTTH F0 mutants were significantly heavier and exhibited a higher incidence of diapause. This work will accelerate future studies of gene function in O. nubilalis and facilitate the development of similar screens in other Lepidopteran and non-model insects.
欧洲玉米螟(Ostrinia nubilalis)是一种农业害虫,也是研究物种、季节适应性和昆虫抗性管理的新兴模式。尽管以前的工作已经发现了与欧洲玉米螟生命周期、繁殖和对 Bt 毒素的抗性差异有关的基因,但由于普遍缺乏针对欧洲玉米螟的强大的基因编辑方案,候选基因的功能验证一直是个障碍。在这里,我们利用 CRISPR/Cas9 基因组编辑系统展示了一种高效实用的方法来诱变 O. nubilalis 的可遗传基因。我们在两个昼夜节律时钟基因--周期(per)和色素分散因子受体(pdfr)以及一个发育基因--前胸托叶激素(ptth)上产生了精确的功能缺失(LOF)突变。由于不需要可见的遗传标记,不同的单导RNA(sgRNA)的基因编辑效率仍然很高,突变对F1后代的种系传递接近100%。当注射高浓度的单导RNA或双导RNA时,F0突变体在行为和发育方面会出现基因特异性表型差异。具体而言,F0 基因突变体表明,PER(而非 PDFR)对正常的蜕皮时间至关重要。PTTH F0突变体明显更重,并表现出更高的休眠率。这项工作将加速未来对幼虫基因功能的研究,并促进在其他鳞翅目昆虫和非模式昆虫中开展类似的筛选工作。
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引用次数: 0
Spraying dsRNA with chitosan formulation improves control of the western flower thrips, Frankliniella occidentalis, in a greenhouse. 用壳聚糖制剂喷洒 dsRNA 可改善温室中对西花蓟马(Frankliniella occidentalis)的控制。
IF 2.3 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-13 DOI: 10.1111/imb.12954
Falguni Khan, Gahyeon Jin, Yonggyun Kim

The western flower thrips, Frankliniella occidentalis, is a serious pest causing both direct feeding damage and indirect harm by transmitting the tomato spotted wilt virus. A spraying double-stranded RNA (dsRNA) targeted at the vacuolar-type ATPase (vATPase) gene was developed and demonstrated high insecticidal activity in the laboratory but less effective in field applications. To improve control efficacy under field conditions, three strategies were explored in this study. First, to identify a more efficient RNA interference (RNAi) target, dsRNA specific to the Snf7 gene was tested alongside dsRNA targeting vATPase, and both were found to be similarly effective in controlling the thrips. Second, to elucidate the factors contributing to dsRNA resistance, dsRNA-degrading enzymes were annotated and their physiological roles in diminishing RNAi efficacy were investigated. Third, to suppress the dsRNA degradation from the dsRNase activities and protect it in field conditions, the dsRNA was encapsulated with chitosan. This formulation enhanced the dsRNA's resistance to environmental stressors such as ultraviolet light and the digestive enzymes in the thrips' gut. Additionally, the chitosan formulation specifically increased the RNAi efficacy, likely by facilitating more efficient entry into the target cells, thus bolstering the insecticidal activity of the dsRNA. The formulated dsRNA was applied on F. occidentalis infesting the hot peppers in a greenhouse at a concentration of 500 ppm, demonstrating an 82.4% control efficacy compared with 59.2% control efficacy observed with the application of naked dsRNA. This study further demonstrated an enhancement in the spectrum of control by combining dsRNAs specific to three distinct thrips species, while the mixture showed no adverse effects on non-target insects, such as the lepidopteran Spodoptera exigua. Collectively, these findings reveal that the chitosan formulation of dsRNA not only improves control efficacy under field conditions but also broadens the control spectrum against three different thrips pests.

西花蓟马(Frankliniella occidentalis)是一种严重的害虫,既会直接取食造成危害,也会传播番茄斑萎病毒造成间接危害。针对液泡型 ATPase(vATPase)基因开发了一种喷洒型双链 RNA(dsRNA),在实验室中表现出很高的杀虫活性,但在田间应用中效果不佳。为了提高田间条件下的防治效果,本研究探索了三种策略。首先,为了确定更有效的 RNA 干扰(RNAi)靶标,对 Snf7 基因特异性 dsRNA 和 vATPase 靶标 dsRNA 进行了测试,结果发现两者对蓟马的控制效果相似。其次,为了阐明导致 dsRNA 抗性的因素,对 dsRNA 降解酶进行了注释,并研究了它们在降低 RNAi 效力方面的生理作用。第三,为了抑制dsRNA被dsRNase降解,并在田间条件下保护dsRNA,dsRNA被壳聚糖包裹。这种配方增强了 dsRNA 对紫外线和蓟马肠道消化酶等环境压力的抵抗力。此外,壳聚糖制剂还特别提高了 RNAi 的功效,这可能是由于它能更有效地进入靶细胞,从而增强了 dsRNA 的杀虫活性。将配制好的 dsRNA 以 500 ppm 的浓度施用于温室中危害辣椒的 F. occidentalis,其防治效果为 82.4%,而施用裸露 dsRNA 的防治效果为 59.2%。这项研究进一步表明,通过结合针对三种不同蓟马物种的 dsRNA,防治效果有所提高,同时混合物对鳞翅目 Spodoptera exigua 等非目标昆虫没有不良影响。总之,这些研究结果表明,dsRNA 的壳聚糖制剂不仅能提高田间条件下的防治效果,还能扩大对三种不同蓟马害虫的防治谱。
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引用次数: 0
Deformed wing virus genotypes A and B do not elicit immunologically different responses in naïve honey bee hosts 畸形翅病毒基因A型和B型不会在天真蜜蜂宿主体内引起不同的免疫反应
IF 2.6 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-27 DOI: 10.1111/imb.12948
Amanda M. Norton, Gabriele Buchmann, Alyson Ashe, Owen T. Watson, Madeleine Beekman, Emily J. Remnant
Iflavirus aladeformis (Picornavirales: Iflaviridae), commonly known as deformed wing virus(DWV), in association with Varroa destructor Anderson and Trueman (Mesostigmata: Varroidae), is a leading factor associated with honey bee (Apis mellifera L. [Hymenoptera: Apidae]) deaths. The virus and mite have a near global distribution, making it difficult to separate the effect of one from the other. The prevalence of two main DWV genotypes (DWV‐A and DWV‐B) has changed over time, leading to the possibility that the two strains elicit a different immune response by the host. Here, we use a honey bee population naïve to both the mite and the virus to investigate if honey bees show a different immunological response to DWV genotypes. We examined the expression of 19 immune genes by reverse transcription quantitative PCR (RT‐qPCR) and analysed small RNA after experimental injection with DWV‐A and DWV‐B. We found no evidence that DWV‐A and DWV‐B elicit different immune responses in honey bees. RNA interference genes were up‐regulated during DWV infection, and small interfering RNA (siRNA) responses were proportional to viral loads yet did not inhibit DWV accumulation. The siRNA response towards DWV was weaker than the response to another honey bee pathogen, Triatovirus nigereginacellulae (Picornavirales: Dicistroviridae; black queen cell virus), suggesting that DWV is comparatively better at evading host antiviral defences. There was no evidence for the production of virus‐derived Piwi‐interacting RNAs (piRNAs) in response to DWV. In contrast to previous studies, and in the absence of V. destructor, we found no evidence that DWV has an immunosuppressive effect. Overall, our results advance our understanding of the immunological effect that DWV in isolation elicits in honey bees.
畸形翅病毒(Iflavirus aladeformis)(Picornavirales: Iflaviridae),俗称畸形翅病毒(DWV),与瓦罗阿破坏者安德森和特鲁曼(Varroa destructor Anderson and Trueman)(Mesostigmata: Varroidae)一起,是造成蜜蜂(Apis mellifera L. [Hymenoptera: Apidae])死亡的主要因素。病毒和螨虫几乎遍布全球,因此很难将两者的影响区分开来。随着时间的推移,两种主要的 DWV 基因型(DWV-A 和 DWV-B)的流行率发生了变化,这导致两种毒株可能会引起宿主不同的免疫反应。在此,我们利用对螨虫和病毒均无免疫反应的蜜蜂种群,研究蜜蜂是否对 DWV 基因型表现出不同的免疫反应。我们通过反转录定量 PCR(RT-qPCR)检测了 19 个免疫基因的表达,并分析了实验性注射 DWV-A 和 DWV-B 后的小 RNA。我们没有发现任何证据表明 DWV-A 和 DWV-B 在蜜蜂体内引起了不同的免疫反应。在DWV感染过程中,RNA干扰基因上调,小干扰RNA(siRNA)反应与病毒载量成正比,但并不能抑制DWV的积累。对DWV的siRNA反应弱于对另一种蜜蜂病原体Triatovirus nigereginacellulae(Picornavirales: Dicistroviridae;黑蜂王浆病毒)的反应,这表明DWV在逃避宿主抗病毒防御方面相对更强。没有证据表明 DWV 可产生源自病毒的 Piwi-interacting RNA(piRNA)。与以前的研究不同,在没有破坏者病毒的情况下,我们没有发现 DWV 有免疫抑制作用的证据。总之,我们的研究结果加深了我们对 DWV 在蜜蜂体内引起的免疫效应的理解。
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引用次数: 0
The salivary gland transcriptome of Varroa destructor reveals suitable targets for RNAi-based mite control. 破坏者 Varroa 的唾液腺转录组揭示了基于 RNAi 的螨虫控制的合适目标。
IF 2.3 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-22 DOI: 10.1111/imb.12945
Andrea Becchimanzi, Alfonso Cacace, Martina Parziale, Giovanna De Leva, Sergio Iacopino, Giovanni Jesu, Ilaria Di Lelio, Virgilio Stillittano, Emilio Caprio, Francesco Pennacchio

The mite Varroa destructor Anderson and Trueman (Mesostigmata: Varroidae) has a dramatic impact on beekeeping and is one of the main causes of honey bee colony losses. This ectoparasite feeds on honey bees' liquid tissues, through a wound created on the host integument, determining weight loss and a reduction of lifespan, as well as the transmission of viral pathogens. However, despite its importance, the mite feeding strategy and the host regulation role by the salivary secretions have been poorly explored. Here, we contribute to fill this gap by identifying the salivary components of V. destructor, to study their functional importance for mite feeding and survival. The differential expression analysis identified 30 salivary gland genes encoding putatively secreted proteins, among which only 15 were found to be functionally annotated. These latter include proteins with putative anti-bacterial, anti-fungal, cytolytic, digestive and immunosuppressive function. The three most highly transcribed genes, coding for a chitin-binding domain protein, a Kazal domain serine protease inhibitor and a papain-like cysteine protease were selected to study their functional importance by reverse genetics. Knockdown (90%-99%) by RNA interference (RNAi) of the transcript of a chitin-binding domain protein, likely interfering with the immune reaction to facilitate mite feeding, was associated with a 40%-50% decrease of mite survival. This work expands our knowledge of the host regulation and nutritional exploitation strategies adopted by ectoparasites of arthropods and allows the identification of potential targets for RNAi, paving the way towards the development of new strategies for Varroa mite control.

瓦氏螨(Varroa destructor Anderson and Trueman,中生代:Varroidae)对养蜂业影响巨大,是造成蜂群损失的主要原因之一。这种体外寄生虫通过寄主皮肤上的伤口吸食蜜蜂的液体组织,导致蜜蜂体重减轻、寿命缩短,并传播病毒病原体。然而,尽管螨虫的取食策略非常重要,唾液分泌物对宿主的调节作用却鲜有研究。在此,我们通过鉴定毁灭蚁的唾液成分,研究它们对螨虫摄食和生存的功能重要性,从而填补这一空白。差异表达分析确定了 30 个唾液腺基因,这些基因编码推测的分泌蛋白,其中只有 15 个有功能注释。后者包括可能具有抗菌、抗真菌、细胞溶解、消化和免疫抑制功能的蛋白质。我们选择了转录率最高的三个基因,分别编码几丁质结合域蛋白、卡扎尔结构域丝氨酸蛋白酶抑制剂和木瓜蛋白酶样半胱氨酸蛋白酶,通过反向遗传学方法研究它们在功能上的重要性。通过 RNA 干扰(RNAi)敲除(90%-99%)一种几丁质结合域蛋白的转录本,螨虫的存活率降低了 40%-50%。这项工作拓展了我们对节肢动物外寄生虫所采取的宿主调节和营养利用策略的认识,并确定了 RNAi 的潜在靶标,为制定新的 Varroa 螨虫控制策略铺平了道路。
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引用次数: 0
The role of epigenetics in insects in changing environments 表观遗传学在不断变化的环境中对昆虫的作用。
IF 2.3 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-18 DOI: 10.1111/imb.12947
Juan Du, Michael A. D. Goodisman
<p>The special issue of Insect Molecular Biology on ‘The role of epigenetics in insects in changing environments’ has arrived. The field of epigenetics is concerned with how different cellular phenotypes arise from the same genotype (Nicoglou & Merlin, <span>2017</span>). Understanding the nature and operation of epigenetic information is of great contemporary importance and interest (Allis & Jenuwein, <span>2016</span>; Cavalli & Heard, <span>2019</span>). Epigenetic information serves as a molecular intermediate that helps translate environmental signals received by the cell into changes in gene expression that allow the cell, and consequently, the organism, to produce a phenotype better suited to its surroundings. Epigenetic information affects gene function, can be passed on through cell divisions and impacts evolutionary processes (Fitz-James & Cavalli, <span>2022</span>; Yi & Goodisman, <span>2021</span>). Two of the most important epigenetic information systems are the methylation of DNA and the modification of histone proteins, both of which may affect gene expression in eukaryotic systems (Almouzni & Cedar, <span>2016</span>).</p><p>Insects constitute the majority of animal species on Earth and display remarkable interspecific and intraspecific phenotypic diversity. This diversity arises, in part, from the operation of epigenetic information (Glastad et al., <span>2019</span>). Epigenetic information is believed to play a significant role in enabling insects to develop phenotypes appropriate to the environment (Duncan et al., <span>2022</span>; Villagra & Frías-Lasserre, <span>2020</span>). Insects show interesting variation in epigenetic systems, are important ecologically and economically and are amenable to experimentation (Verlinden, <span>2017</span>). Thus, insects have emerged as key systems for studying the function of epigenetic information. In this special issue, we present nine papers investigating a diversity of insect species that cover topics on epigenetic regulation during development, under conditions of environmental stress and across generations.</p><p>A good entrée to this special issue is the review by Maleszka (<span>2024</span>). This ‘reminiscence’ uses the historically important benchmark of the sequencing of the honeybee genome as a jumping off point to consider the state of insect molecular biology, in general, and insect epigenetics, in particular. Maleszka discusses how the field of social behaviour was advanced by the sequencing of the honeybee genome. He also promotes the idea of metabolo-epigenetics, which considers how energy metabolites influence epigenetic regulation. Maleszka continues by discussing the epigenomic revolution, whereby the epigenetic state of the entire genome can now be assessed. He concludes by noting that researchers should focus on the idea that ‘epigenetics is about bridging the gap between the genotype and the phenotype’. We hope that the articles provide
昆虫分子生物学》特刊 "表观遗传学在昆虫变化环境中的作用 "已经出版。表观遗传学领域关注的是同一基因型如何产生不同的细胞表型(Nicoglou &amp; Merlin, 2017)。了解表观遗传信息的性质和运作具有重要的时代意义和兴趣(Allis &amp; Jenuwein, 2016; Cavalli &amp; Heard, 2019)。表观遗传信息是一种分子中间体,有助于将细胞接收到的环境信号转化为基因表达的变化,从而使细胞以及生物体产生更适合周围环境的表型。表观遗传信息影响基因功能,可通过细胞分裂传递,并影响进化过程(Fitz-James &amp; Cavalli, 2022; Yi &amp; Goodisman, 2021)。DNA 的甲基化和组蛋白的修饰是两个最重要的表观遗传信息体系,它们都可能影响真核系统中的基因表达(Almouzni &amp; Cedar, 2016)。昆虫占地球上动物物种的大多数,并显示出显著的种间和种内表型多样性。这种多样性部分源于表观遗传信息的运作(Glastad 等人,2019 年)。表观遗传信息被认为在使昆虫形成与环境相适应的表型方面发挥着重要作用(Duncan 等人,2022 年;Villagra &amp; Frías-Lasserre, 2020 年)。昆虫在表观遗传系统方面表现出有趣的差异,在生态学和经济学上都很重要,而且易于实验(Verlinden,2017 年)。因此,昆虫已成为研究表观遗传信息功能的关键系统。在本特刊中,我们将介绍九篇研究昆虫物种多样性的论文,涵盖发育过程中、环境压力条件下和跨代表观遗传调控的主题。这篇 "回忆文章 "以蜜蜂基因组测序这一具有重要历史意义的基准为切入点,探讨了昆虫分子生物学,尤其是昆虫表观遗传学的现状。Maleszka 讨论了蜜蜂基因组测序如何推动了社会行为领域的发展。他还推广了代谢表观遗传学的观点,认为能量代谢产物如何影响表观遗传调控。Maleszka 接着讨论了表观基因组革命,即现在可以评估整个基因组的表观遗传状态。他最后指出,研究人员应重视 "表观遗传学是缩小基因型与表型之间差距的桥梁 "这一理念。我们希望本特刊提供的文章将有助于弥合这一差距,并进一步加深我们对昆虫表观遗传信息的理解。昆虫中的 DNA 甲基化最早是在蜜蜂中发现的,但后来又在多种全代谢和半代谢昆虫中发现了 DNA 甲基化(Bewick 等人,2017 年)。DNA 甲基化被认为是通过 DNA 甲基转移酶(Dnmt)基因家族的运作发生的。对哺乳动物系统的研究表明,DNA 甲基转移酶 3 负责 DNA 的从头甲基化,而 DNA 甲基转移酶 1 则维持 DNA 的甲基化模式(Lyko,2018 年)。但有趣的是,这些 Dnmt 基因在整个昆虫系统发育过程中出现增减(Bewick 等人,2017 年)。此外,不同昆虫物种的 DNA 甲基化水平也有很大差异(Thomas 等人,2020 年)。这些发现使人们对昆虫基因组中 DNA 甲基化的实际功能产生了疑问。因此,对昆虫 DNA 甲基化的性质和功能的研究仍然是一个高度优先的领域。Yoon 等人(2024 年)研究了豌豆蚜(Acyrthosiphon pisum)DNA 甲基化的进化和功能。Yoon 等人(2024 年)研究了豌豆蚜 Acyrthosiphon pisum 的 DNA 甲基化进化和功能。他们证明了 Dnmt3 基因在豌豆蚜早期发育中的关键作用。他们随后证明,用影响 DNA 甲基化的化学物质对发育中的蚜虫进行实验处理,会导致生殖功能缺陷。Cunningham 等人(2024 年)也研究了 Dnmt 基因的功能。不过,他们研究的是粉虱的 DNA 甲基化。他们专门研究了 Dnmt1 基因的功能,发现该基因会影响特定的分子通路。Cunningham 等人利用包括 RNA 干扰在内的实验技术来探究 Dnmt1 的功能。 与之前的研究结果一致,他们发现敲除 Dnmt1 会影响配子的发生。但令人惊讶的是,他们的实验处理并没有导致基因表达发生大规模的整体变化。研究小组还研究了虎斑蛙的 DNA 甲基化模式。他们发现,外显子周围以及高度和均匀表达的基因的DNA甲基化水平较高。这些发现与之前在昆虫类群中的观察结果一致,并进一步支持了 DNA 甲基化与基因表达之间的关联。他们发现 Dnmt1 是温度胁迫反应、表型可塑性和发育的关键调节因子。研究小组研究了 Dnmt1 基因在不同发育阶段的表达情况。他们还利用 RNA 干扰来敲除 Dnmt1 的表达。这些实验使 T. absoluta 对温度的耐受性发生了变化。因此,Tang 等人的研究确定了 Dnmt 基因在昆虫体内应对环境变化的功能效应。McCaw等人(2024年)报告说,与DNA修复和循环途径有关的表观遗传机制调节了昆虫对温度变化的生活史反应。McCaw等人发现了种甲虫Callosobruchus maculatus体内Dnmt1表达水平的变化。研究小组使用化学处理方法来实验性地改变大斑金龟子的 DNA 甲基化水平。在某些条件下,这些实验会导致个体的发育、繁殖力和生存能力发生变化。重要的是,这些影响往往取决于温度,这表明环境背景在调节表观遗传变化方面的重要性。他们使用全基因组亚硫酸氢盐测序技术(一种测量整个基因组中每个核苷酸甲基化的技术)来研究大黄蜂的 DNA 甲基化模式。研究小组发现,赤松属组织之间的甲基化存在差异。具体来说,工蚁卵巢中的DNA甲基化水平特别低,而雄性精子中的甲基化水平较高。在蜜蜂的不同发育阶段,DNA甲基化水平也存在差异。重要的是,Hunt 等人认为,DNA 甲基化标记可能会在卵子生成过程中被清除,从而使每一代的表观遗传重新编程成为可能。动物体内的 DNA 甲基化几乎总是发生在胞嘧啶碱基上,然后是鸟嘌呤碱基(即所谓的 CpG 二核苷酸位点)。然而,有证据表明,DNA 甲基化可能发生在动物基因组的其他位置。Royle 等人(2024 年)利用全基因组亚硫酸氢盐测序技术研究了棉铃虫的非 CpG DNA 甲基化。他们发现不同生命阶段的胞嘧啶甲基化水平不同。进一步的分析表明,这种差异主要来自非 CpG 背景下胞嘧啶碱基甲基化的变化。在这些非标准上下文中甲基化程度不同的基因富含与关键信号通路和染色质重塑有关的功能。因此,Royle 等人建议,在未来的表观遗传研究中应考虑非标准 DNA 甲基化。组蛋白是一个古老而重要的基因家族,在真核生物中随处可见。组蛋白的核心作用是帮助 DNA 包装。此外,组蛋白还可以通过多种方式进行化学修饰。这些化学修饰是表观遗传信息的重要来源(Stewart-Morgan 等人,2020 年)。所谓的组蛋白密码通过改变染色质的性质和影响哪些调控蛋白被招募到基因区域来影响基因的表达和功能(Talbert &amp; Henikoff, 2010; Zentner &amp; Henikoff, 2013)。组蛋白修饰在昆虫类群中具有广泛的重要性。Wei 等人(2024 年)研究了北方家蚊(Culex pipiens)的特定组蛋白修饰。他们
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引用次数: 0
Juvenile hormone-induced microRNA miR-iab-8 regulates lipid homeostasis and metamorphosis in Drosophila melanogaster 幼年激素诱导的微RNA miR-iab-8调控黑腹果蝇的脂质平衡和蜕变
IF 2.3 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-15 DOI: 10.1111/imb.12944
Qianyu He, Shanshan Chen, Tianlan Hou, Jinxia Chen

Metamorphosis plays an important role in the evolutionary success of insects. Accumulating evidence indicated that microRNAs (miRNAs) are involved in the regulation of processes associated with insect metamorphosis. However, the miRNAs coordinated with juvenile hormone (JH)-regulated metamorphosis remain poorly reported. In the present study, using high-throughput miRNA sequencing combined with Drosophila genetic approaches, we demonstrated that miR-iab-8, which primarily targets homeotic genes to modulate haltere-wing transformation and sterility was up-regulated by JH and involved in JH-mediated metamorphosis. Overexpression of miR-iab-8 in the fat body resulted in delayed development and failure of larval-pupal transition. Furthermore, metabolomic analysis results revealed that overexpression of miR-iab-8 caused severe energy metabolism defects especially the lipid metabolism, resulting in significantly reduced triacylglycerol (TG) content and glycerophospholipids but enhanced accumulation of phosphatidylcholine (PC) and phosphatidylethanolamine (PE). In line with this, Nile red staining demonstrated that during the third larval development, the TG content in the miR-iab-8 overexpression larvae was continuously decreased, which is opposite to the control. Additionally, the transcription levels of genes committed to TG synthesis and breakdown were found to be significantly increased and the expression of genes responsible for glycerophospholipids metabolism were also altered. Overall, we proposed that JH induced miR-iab-8 expression to perturb the lipid metabolism homeostasis especially the TG storage in the fat body, which in turn affected larval growth and metamorphosis.

变态在昆虫的成功进化过程中扮演着重要角色。越来越多的证据表明,微RNA(miRNA)参与了昆虫变态过程的调控。然而,与幼年激素(JH)调控的变态过程相关的 miRNAs 仍鲜有报道。在本研究中,我们利用高通量 miRNA 测序结合果蝇遗传学方法,证明了 miR-iab-8 主要靶向同源基因以调控幼翅转化和不育,它被 JH 上调并参与了 JH 介导的变态过程。在脂肪体中过表达 miR-iab-8 会导致发育延迟和幼虫-蛹过渡失败。此外,代谢组学分析结果表明,过表达 miR-iab-8 会导致严重的能量代谢缺陷,尤其是脂质代谢缺陷,导致三酰甘油(TG)含量和甘油磷脂显著减少,但磷脂酰胆碱(PC)和磷脂酰乙醇胺(PE)的积累增加。尼罗河红染色表明,在第三代幼虫发育过程中,miR-iab-8过表达幼虫的甘油三酯含量持续下降,这与对照组相反。此外,我们还发现致力于 TG 合成和分解的基因的转录水平显著增加,负责甘油磷脂代谢的基因的表达也发生了改变。总之,我们认为 JH 诱导 miR-iab-8 的表达扰乱了脂质代谢平衡,尤其是脂肪体中 TG 的储存,进而影响了幼虫的生长和变态。
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引用次数: 0
Genome-wide identification of PAR domain protein 1 (PDP1) targets through ChIP-seq reveals the regulation of diapause-specific characteristics in Culex pipiens 通过 ChIP-seq 在全基因组范围内鉴定 PAR 结构域蛋白 1 (PDP1) 的靶标,发现了对库蚊双羽特异性特征的调控。
IF 2.3 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-11 DOI: 10.1111/imb.12943
Prabin Dhungana, Xueyan Wei, Megan E. Meuti, Cheolho Sim

Insects use seasonal diapause as an alternative strategy to endure adverse seasons. This developmental trajectory is induced by environmental cues like short-day lengths in late summer and early fall, but how insects measure day length is unknown. The circadian clock has been implicated in regulating photoperiodic or seasonal responses in many insects, including the Northern house mosquito, Culex pipiens, which enters adult diapause. To investigate the potential control of diapause by circadian control, we employed ChIP-sequencing to identify the downstream targets of a circadian transcription factor, PAR domain protein 1 (PDP1), that contribute to the hallmark features of diapause. We identified the nearest genes in a 10 kb region of the anticipated PDP1 binding sites, listed prospective targets and searched for PDP1-specific binding sites. By examining the functional relevance to diapause-specific behaviours and modifications such as metabolic pathways, lifespan extension, cell cycle regulation and stress tolerance, eight genes were selected as targets and validated using ChIP-qPCR. In addition, qRT-PCR demonstrated that the mRNA abundance of PDP1 targets increased in the heads of diapausing females during the middle of the scotophase (ZT17) compared with the early photophase (ZT1), in agreement with the peak and trough of PDP1 abundance. Thus, our investigation uncovered the mechanism by which PDP1 might generate a diapause phenotype in insects.

昆虫利用季节性休眠作为忍受不利季节的替代策略。这种发育轨迹是由夏末秋初的短日照等环境线索诱发的,但昆虫如何测量日照长度尚不清楚。昼夜节律钟与调节许多昆虫的光周期或季节反应有关,包括进入成虫休眠期的北方家蚊。为了研究昼夜节律对暂停的潜在控制,我们采用了 ChIP 测序技术来确定昼夜节律转录因子 PAR 结构域蛋白 1(PDP1)的下游靶标,这些靶标对暂停的标志性特征做出了贡献。我们确定了预期 PDP1 结合位点 10 kb 区域内最近的基因,列出了预期靶标,并搜索了 PDP1 特异性结合位点。通过研究与停滞期特异性行为和改变(如代谢途径、寿命延长、细胞周期调控和应激耐受性)的功能相关性,我们选择了八个基因作为靶标,并使用 ChIP-qPCR 进行了验证。此外,qRT-PCR结果表明,与光期早期(ZT1)相比,在光期中期(ZT17),尿崩雌虫头部PDP1靶基因的mRNA丰度增加,这与PDP1丰度的峰值和谷值一致。因此,我们的研究揭示了PDP1在昆虫中产生停歇表型的机制。
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Insect Molecular Biology
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