Pub Date : 2025-10-22DOI: 10.1016/j.ijpara.2025.10.003
Masayuki Morita, Charlie Jennison, Matthew T O'Neill, Bernard N Kanoi, Tomoko Ishino, Takafumi Tsuboi, Justin A Boddey, Eizo Takashima
Understanding the red blood cell (RBC) invasion mechanism by Plasmodium falciparum, the causative agent of human malaria, is critical for developing blood-stage vaccines. Most research on the roles of parasite molecules during invasion into the RBC has focused on the pre-invasion and invasion phases, particularly on merozoite proteins in these early steps. Consequently, well-established blood-stage vaccine candidates, such as MSP1, AMA1, EBA175, Rh5, CyRPA, and Ripr, have been discovered by research targeting the early invasion phases. Recently, we identified that Liver Stage Antigen 3 (LSA3) is a merozoite dense granule protein and a novel blood-stage vaccine candidate, given that antigen-specific antibodies inhibit parasite growth by 24%. However, the precise role of LSA3 in RBC invasion remains unclear. In this study, we investigated the function of LSA3 during merozoite invasion of RBCs. In the late-invasion phase, LSA3 localized to the posterior end of invading wild-type merozoites accessible to anti-LSA3 antibodies in the culture medium. In vitro cultured lsa3 knockout parasites (ΔLSA3) exhibited slowed parasite growth. Time-lapse imaging revealed that knockout of lsa3 resulted in a 65% reduction in normal invasion completion relative to the wild-type. Furthermore, ΔLSA3 parasites displayed a high frequency of accolé-form: aberrant morphology, with a protruding convex-shaped ring-stage just beneath the RBC membrane, following successful internalization into RBCs. This study provides the first evidence that a merozoite dense granule protein potentially plays an important role in the late-invasion phase of the P. falciparum erythrocytic cycle.
{"title":"Plasmodium falciparum Liver Stage Antigen 3 plays a role in completing the final stages of merozoite invasion of red blood cells.","authors":"Masayuki Morita, Charlie Jennison, Matthew T O'Neill, Bernard N Kanoi, Tomoko Ishino, Takafumi Tsuboi, Justin A Boddey, Eizo Takashima","doi":"10.1016/j.ijpara.2025.10.003","DOIUrl":"10.1016/j.ijpara.2025.10.003","url":null,"abstract":"<p><p>Understanding the red blood cell (RBC) invasion mechanism by Plasmodium falciparum, the causative agent of human malaria, is critical for developing blood-stage vaccines. Most research on the roles of parasite molecules during invasion into the RBC has focused on the pre-invasion and invasion phases, particularly on merozoite proteins in these early steps. Consequently, well-established blood-stage vaccine candidates, such as MSP1, AMA1, EBA175, Rh5, CyRPA, and Ripr, have been discovered by research targeting the early invasion phases. Recently, we identified that Liver Stage Antigen 3 (LSA3) is a merozoite dense granule protein and a novel blood-stage vaccine candidate, given that antigen-specific antibodies inhibit parasite growth by 24%. However, the precise role of LSA3 in RBC invasion remains unclear. In this study, we investigated the function of LSA3 during merozoite invasion of RBCs. In the late-invasion phase, LSA3 localized to the posterior end of invading wild-type merozoites accessible to anti-LSA3 antibodies in the culture medium. In vitro cultured lsa3 knockout parasites (ΔLSA3) exhibited slowed parasite growth. Time-lapse imaging revealed that knockout of lsa3 resulted in a 65% reduction in normal invasion completion relative to the wild-type. Furthermore, ΔLSA3 parasites displayed a high frequency of accolé-form: aberrant morphology, with a protruding convex-shaped ring-stage just beneath the RBC membrane, following successful internalization into RBCs. This study provides the first evidence that a merozoite dense granule protein potentially plays an important role in the late-invasion phase of the P. falciparum erythrocytic cycle.</p>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145367894","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-22DOI: 10.1016/j.ijpara.2025.10.005
Yi-Jou Chen, Vanessa Li, Michelle Suwandy, Ioana Bianca Mitrea, Douglas Hayward, Susan Jaensch, Emily Kate Francis, Jan Šlapeta
Emerging benzimidazole resistance in canine hookworms poses a growing concern for veterinary and public health. Molecular diagnostics targeting β-tubulin gene mutations are essential for resistance surveillance but traditionally rely on refrigerated faecal samples. This study evaluates dimethyl sulfoxide, EDTA, and saturated NaCl (DESS) as a room-temperature preservation medium for canine faeces. Using ITS-2 rDNA and isotype-1 β-tubulin gene (tubb-1) amplicon metabarcoding, we compared DNA integrity and diagnostic performance of DESS-preserved samples (4, 28, and 106 days) to refrigerated controls. No significant differences in PCR amplification or sequencing outcomes were observed. DESS enabled reliable detection of hookworm species and resistance-associated SNPs, including F167Y in tubb-1, with mutation frequencies consistent across treatments. Therefore, DESS can preserve samples from remote settings without cold chain logistics. Our findings validate DESS as a robust alternative for sample collection for molecular parasitology, facilitating expanded surveillance of anthelmintic resistance in field conditions.
{"title":"Ambient temperature storage in DESS supports molecular studies of benzimidazole resistance from canine hookworm eggs.","authors":"Yi-Jou Chen, Vanessa Li, Michelle Suwandy, Ioana Bianca Mitrea, Douglas Hayward, Susan Jaensch, Emily Kate Francis, Jan Šlapeta","doi":"10.1016/j.ijpara.2025.10.005","DOIUrl":"10.1016/j.ijpara.2025.10.005","url":null,"abstract":"<p><p>Emerging benzimidazole resistance in canine hookworms poses a growing concern for veterinary and public health. Molecular diagnostics targeting β-tubulin gene mutations are essential for resistance surveillance but traditionally rely on refrigerated faecal samples. This study evaluates dimethyl sulfoxide, EDTA, and saturated NaCl (DESS) as a room-temperature preservation medium for canine faeces. Using ITS-2 rDNA and isotype-1 β-tubulin gene (tubb-1) amplicon metabarcoding, we compared DNA integrity and diagnostic performance of DESS-preserved samples (4, 28, and 106 days) to refrigerated controls. No significant differences in PCR amplification or sequencing outcomes were observed. DESS enabled reliable detection of hookworm species and resistance-associated SNPs, including F167Y in tubb-1, with mutation frequencies consistent across treatments. Therefore, DESS can preserve samples from remote settings without cold chain logistics. Our findings validate DESS as a robust alternative for sample collection for molecular parasitology, facilitating expanded surveillance of anthelmintic resistance in field conditions.</p>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145367910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-15DOI: 10.1016/j.ijpara.2025.10.002
Heather J Knight, Kevin O McKinley, Anastasios D Tsaousis, Jennifer A Dodd, Sonja Rückert
Gregarines are a notably understudied but widespread group of protists that colonise aquatic and terrestrial invertebrates. This limited understanding of gregarines and their interactions with their hosts results partly from the absence of established culturing techniques and our understanding therefore has heavily relied on field collections. This study utilised for the first time cultured Gammarus pulex populations and comparative functional response models to explore the effects of gregarine colonisation on the host's consumption of Chironomid prey. This study shows that both positive and negative G. pulex displayed a Type II functional response. There were no statistical differences in the functional response parameters between the two groups. These results suggest that, under the study conditions, gregarines may function as commensal symbionts within their G. pulex host. This is consistent with growing evidence for gregarines acting across a range of symbiotic roles within their hosts. These findings provide insight into the role of gregarines in G. pulex, an invertebrate species frequently used for field- and lab-based experiments, contributing to the evidence of the complex and varied gregarine host-symbiont interactions.
{"title":"The effect of gregarine (Apicomplexa) colonisation on the functional response of the amphipod host.","authors":"Heather J Knight, Kevin O McKinley, Anastasios D Tsaousis, Jennifer A Dodd, Sonja Rückert","doi":"10.1016/j.ijpara.2025.10.002","DOIUrl":"10.1016/j.ijpara.2025.10.002","url":null,"abstract":"<p><p>Gregarines are a notably understudied but widespread group of protists that colonise aquatic and terrestrial invertebrates. This limited understanding of gregarines and their interactions with their hosts results partly from the absence of established culturing techniques and our understanding therefore has heavily relied on field collections. This study utilised for the first time cultured Gammarus pulex populations and comparative functional response models to explore the effects of gregarine colonisation on the host's consumption of Chironomid prey. This study shows that both positive and negative G. pulex displayed a Type II functional response. There were no statistical differences in the functional response parameters between the two groups. These results suggest that, under the study conditions, gregarines may function as commensal symbionts within their G. pulex host. This is consistent with growing evidence for gregarines acting across a range of symbiotic roles within their hosts. These findings provide insight into the role of gregarines in G. pulex, an invertebrate species frequently used for field- and lab-based experiments, contributing to the evidence of the complex and varied gregarine host-symbiont interactions.</p>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145312814","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-08DOI: 10.1016/j.ijpara.2025.10.001
Amin Azimi, Reza Salavati
Leishmania donovani is the causative agent of visceral leishmaniasis, a tropical disease affecting millions worldwide. While proteomic studies of Leishmania species have been conducted, the organization of protein-protein interaction (PPI) networks in L. donovani remains largely unexplored. Here, we present a protein interaction network for L. donovani generated through size-exclusion chromatography coupled with mass spectrometry (SEC-MS) and computational analysis. We quantified 3468 proteins with high confidence, of which approximately 70 % are conserved across the Tritryps (Trypanosoma brucei, T. cruzi, and L. donovani). The resulting network contains 1509 nodes and 16,095 interactions, exhibiting scale-free topology and covering key cellular machineries such as the proteasome, ribosome, translation initiation complexes, and BBSome. Remarkably, most annotated Leishmania complexes remained intact within the network, highlighting its high quality. Paralogs within L. donovani frequently interacted with each other, a phenomenon observed at a higher rate than reported in different organisms. Beyond structural organization, the network also provided interaction-based evidence that functionally contextualizes previously uncharacterized or poorly annotated proteins. Complexes involved in mRNA metabolism and flagellar assembly revealed novel components supported by conserved interaction patterns, underscoring the biological utility of the network for functional inference. Our study provides the first experimentally derived, large-scale interaction network specific to L. donovani, offering critical insights into the parasite's molecular architecture. All interaction data are available through our dedicated database at https://2025.trypsnetdb.org.
{"title":"A global protein interaction network of Leishmania donovani.","authors":"Amin Azimi, Reza Salavati","doi":"10.1016/j.ijpara.2025.10.001","DOIUrl":"10.1016/j.ijpara.2025.10.001","url":null,"abstract":"<p><p>Leishmania donovani is the causative agent of visceral leishmaniasis, a tropical disease affecting millions worldwide. While proteomic studies of Leishmania species have been conducted, the organization of protein-protein interaction (PPI) networks in L. donovani remains largely unexplored. Here, we present a protein interaction network for L. donovani generated through size-exclusion chromatography coupled with mass spectrometry (SEC-MS) and computational analysis. We quantified 3468 proteins with high confidence, of which approximately 70 % are conserved across the Tritryps (Trypanosoma brucei, T. cruzi, and L. donovani). The resulting network contains 1509 nodes and 16,095 interactions, exhibiting scale-free topology and covering key cellular machineries such as the proteasome, ribosome, translation initiation complexes, and BBSome. Remarkably, most annotated Leishmania complexes remained intact within the network, highlighting its high quality. Paralogs within L. donovani frequently interacted with each other, a phenomenon observed at a higher rate than reported in different organisms. Beyond structural organization, the network also provided interaction-based evidence that functionally contextualizes previously uncharacterized or poorly annotated proteins. Complexes involved in mRNA metabolism and flagellar assembly revealed novel components supported by conserved interaction patterns, underscoring the biological utility of the network for functional inference. Our study provides the first experimentally derived, large-scale interaction network specific to L. donovani, offering critical insights into the parasite's molecular architecture. All interaction data are available through our dedicated database at https://2025.trypsnetdb.org.</p>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145274445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-08DOI: 10.1016/j.ijpara.2025.09.010
Luise Grace Klass, Irina Diekmann, Sandro Andreotti, Susan Mbedi, Sarah Sparmann, Thore Schenk, Haley P Anderson, Jennifer Bellaw, Martin K Nielsen, Jürgen Krücken, Georg von Samson-Himmelstjerna
Strongyles, especially non-migratory Strongylidae, are the most common equine gut parasites, and typically occur in mixed infections with 10 - 20 species per host. Current knowledge on strongyle species prevalence and within-host tropism is sparse. Herein species composition of mixed strongyle infections of 12 naturally infected untreated young horses, based on strongyle eggs extracted from faeces, cultured third stage larva and luminal worms collected from ventral and dorsal colon was examined. Species were identified using a cytochrome c oxidase I (COI) metabarcoding approach allowing differentiation of operational taxonomic units (OTU) in small strongyle species complexes. In total, 16 small strongyle and one large strongyle species were identified. Eleven small strongyles were detected in all equines, including three cryptic species: Cylicostephanus calicatus OTU II, Cylicostephanus minutus OTU II and III. Coherence of detection rate, alpha and beta diversity showed high agreeance between data obtained using DNA from faecal eggs and cultured larvae. Diversity, but not observed richness, was higher in eggs and larvae compared to luminal worms (Inverse Simpson index, Shannon index, all P < 0.05). Bray-Curtis and Jaccard dissimilarity showed overlapping beta diversity clusters for eggs and larva, while ventral and dorsal colon samples clustered separately and differed significantly according to PERMANOVA (P < 0.001). Five small strongyle species showed significantly higher occurrence in the ventral than dorsal colon, including cryptic species Cylicostephanus calicatus OTU II. This study provides novel prevalence data for five cryptic species, documents species tropism within intestinal compartments and demonstrates high strongyle species composition agreement between faecal eggs and cultured larvae.
圆形线虫,尤其是非迁徙性圆形线虫科,是最常见的马肠道寄生虫,通常发生在每宿主10 - 20种的混合感染中。目前关于圆形种的流行和寄主内趋向性的知识很少。本文根据从粪便中提取的圆形线虫卵、培养的第三期幼虫和从腹背结肠收集的管腔蠕虫,对12匹自然感染的未经治疗的小马的混合圆形线虫感染的物种组成进行了研究。物种鉴定采用细胞色素c氧化酶I (COI)元条形码方法,允许在小型圆形物种复合体中区分操作分类单位(OTU)。共鉴定出小圆蝽16种,大圆蝽1种。所有马均检出11个小圆管,包括3个隐种:Cylicostephanus calicatus OTU II、Cylicostephanus minutus OTU II和III。检出率的一致性、α和β多样性表明,用粪卵和培养的幼虫DNA获得的数据高度一致。卵和幼虫的多样性高于腔虫(Inverse Simpson指数、Shannon指数,均P < 0.05)。Bray-Curtis和Jaccard差异显示卵和幼虫的β多样性集群重叠,而腹侧和背侧结肠样本的β多样性集群是分开的,且根据PERMANOVA差异显著(P < 0.001)。5种小圆形种在结肠腹侧的发生率显著高于结肠背侧,其中包括隐种Cylicostephanus calicatus OTU II。本研究为五种隐种提供了新的流行数据,记录了肠道内的物种趋向性,并证明了粪卵和养殖幼虫之间的圆形物种组成高度一致。
{"title":"Species diversity and within-host tropism for mixed equine strongyle infections using a cytochrome c oxidase subunit I metabarcoding approach.","authors":"Luise Grace Klass, Irina Diekmann, Sandro Andreotti, Susan Mbedi, Sarah Sparmann, Thore Schenk, Haley P Anderson, Jennifer Bellaw, Martin K Nielsen, Jürgen Krücken, Georg von Samson-Himmelstjerna","doi":"10.1016/j.ijpara.2025.09.010","DOIUrl":"10.1016/j.ijpara.2025.09.010","url":null,"abstract":"<p><p>Strongyles, especially non-migratory Strongylidae, are the most common equine gut parasites, and typically occur in mixed infections with 10 - 20 species per host. Current knowledge on strongyle species prevalence and within-host tropism is sparse. Herein species composition of mixed strongyle infections of 12 naturally infected untreated young horses, based on strongyle eggs extracted from faeces, cultured third stage larva and luminal worms collected from ventral and dorsal colon was examined. Species were identified using a cytochrome c oxidase I (COI) metabarcoding approach allowing differentiation of operational taxonomic units (OTU) in small strongyle species complexes. In total, 16 small strongyle and one large strongyle species were identified. Eleven small strongyles were detected in all equines, including three cryptic species: Cylicostephanus calicatus OTU II, Cylicostephanus minutus OTU II and III. Coherence of detection rate, alpha and beta diversity showed high agreeance between data obtained using DNA from faecal eggs and cultured larvae. Diversity, but not observed richness, was higher in eggs and larvae compared to luminal worms (Inverse Simpson index, Shannon index, all P < 0.05). Bray-Curtis and Jaccard dissimilarity showed overlapping beta diversity clusters for eggs and larva, while ventral and dorsal colon samples clustered separately and differed significantly according to PERMANOVA (P < 0.001). Five small strongyle species showed significantly higher occurrence in the ventral than dorsal colon, including cryptic species Cylicostephanus calicatus OTU II. This study provides novel prevalence data for five cryptic species, documents species tropism within intestinal compartments and demonstrates high strongyle species composition agreement between faecal eggs and cultured larvae.</p>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145274481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-04DOI: 10.1016/j.ijpara.2025.09.007
Jürgen Krücken, Irina Diekmann, Sandro Andreotti, Christina M Bredtmann, Susan Mbedi, Sarah Sparmann, Jennifer S Schmidt, Fernando de Almeida Borges, Mariana Green de Freitas, Guillaume Sallé, Heribert Hofer, Jacqueline B Matthews, Thomas Tzelos, Martin K Nielsen, Tetiana A Kuzmina, Georg von Samson Himmelstjerna
Equines are parasitized by complex communities of Strongylidae (Nematoda) comprising multi-species infections. Currently, Cyathostominae are most prevalent, while Strongylus species are only rarely detected. Since eggs and, in most cases, infective larvae cannot be differentiated to species level, except for Strongylus spp., species-specific knowledge of the pathology, epidemiology and ecology of these parasitic nematodes is limited. Reference sequence data for several cyathostomin species are limited or missing. Deep amplicon sequencing of internal transcribed spacer 2 (ITS-2) regions of nematodes has been used in equines previously, although barcoding studies demonstrated a better species resolution for the cytochrome c oxidase subunit I (COI) region. The present study introduces a nemabiome method based on sequencing of COI fragments. This method was applied to compare third stage larvae, representing strongyle communities, derived from regularly treated (RT) and never treated (NT) equine populations from Brazil, France (only RT), Germany, Ukraine, the UK, and the USA. Samples were predominantly from horses, but some were obtained from Przewalski's horses (Ukraine), donkeys (Germany, Ukraine) and kulans (Ukraine). Most sequence reads (87.7 %) were identified to species level, but unclassified reads occurred more frequently in donkeys and kulans than horses. No obvious difference in species diversity and richness was observed between RT and NT equines. However, there were significant differences in species composition between the RT and NT groups. Strongylus spp. were more common in NT groups but also showed unexpectedly high abundances in RT horses. Cylicocyclus nassatus, Cylicostephanus longibursatus, and Cyathostomum catinatum were more abundant in RT groups, suggesting that strongyle communities in domestic equines may have been shaped by anthelmintic treatments during last decades. The decreased classification success for reads from non-caballine equines suggests that there are more strongyle species specific for this rarely-investigated group which requires additional efforts to improve the sequence database, particularly for these hosts.
{"title":"Cytochrome c oxidase I deep amplicon sequencing for metabarcoding of equine strongyle communities: unexpectedly high Strongylus spp. prevalence in treated horses.","authors":"Jürgen Krücken, Irina Diekmann, Sandro Andreotti, Christina M Bredtmann, Susan Mbedi, Sarah Sparmann, Jennifer S Schmidt, Fernando de Almeida Borges, Mariana Green de Freitas, Guillaume Sallé, Heribert Hofer, Jacqueline B Matthews, Thomas Tzelos, Martin K Nielsen, Tetiana A Kuzmina, Georg von Samson Himmelstjerna","doi":"10.1016/j.ijpara.2025.09.007","DOIUrl":"10.1016/j.ijpara.2025.09.007","url":null,"abstract":"<p><p>Equines are parasitized by complex communities of Strongylidae (Nematoda) comprising multi-species infections. Currently, Cyathostominae are most prevalent, while Strongylus species are only rarely detected. Since eggs and, in most cases, infective larvae cannot be differentiated to species level, except for Strongylus spp., species-specific knowledge of the pathology, epidemiology and ecology of these parasitic nematodes is limited. Reference sequence data for several cyathostomin species are limited or missing. Deep amplicon sequencing of internal transcribed spacer 2 (ITS-2) regions of nematodes has been used in equines previously, although barcoding studies demonstrated a better species resolution for the cytochrome c oxidase subunit I (COI) region. The present study introduces a nemabiome method based on sequencing of COI fragments. This method was applied to compare third stage larvae, representing strongyle communities, derived from regularly treated (RT) and never treated (NT) equine populations from Brazil, France (only RT), Germany, Ukraine, the UK, and the USA. Samples were predominantly from horses, but some were obtained from Przewalski's horses (Ukraine), donkeys (Germany, Ukraine) and kulans (Ukraine). Most sequence reads (87.7 %) were identified to species level, but unclassified reads occurred more frequently in donkeys and kulans than horses. No obvious difference in species diversity and richness was observed between RT and NT equines. However, there were significant differences in species composition between the RT and NT groups. Strongylus spp. were more common in NT groups but also showed unexpectedly high abundances in RT horses. Cylicocyclus nassatus, Cylicostephanus longibursatus, and Cyathostomum catinatum were more abundant in RT groups, suggesting that strongyle communities in domestic equines may have been shaped by anthelmintic treatments during last decades. The decreased classification success for reads from non-caballine equines suggests that there are more strongyle species specific for this rarely-investigated group which requires additional efforts to improve the sequence database, particularly for these hosts.</p>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145237876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-01DOI: 10.1016/j.ijpara.2025.05.007
Chen-Hua Li, Robert Poulin
Advances in DNA sequencing technology have significantly increased the availability of publicly accessible genetic data across various parasite taxa. This genetic data is crucial for elucidating gene flow, connectivity among parasite populations, cryptic diversity, and resolving parasite phylogenies. However, phylogenetic reconstructions are often hindered by incomplete genetic data across taxa, particularly in less-studied taxa like parasitic helminths. We tested whether the availability of genetic data for helminth species is biased and influenced by which hosts they infect using the largest known helminth life cycle database. We compared helminth species with genetic sequences in the NCBI Nucleotide and Gene databases against those without publicly available sequences. We examined the impact of the number of definitive hosts, their higher taxon, conservation status, and habitat on genetic data availability. Our findings reveal significant biases in existing genetic data for helminth parasites, influenced by host-related factors. Helminth species with more definitive hosts species, hosts of conservation concerns, and/or those with terrestrial hosts are more likely to have genetic data available. These biases in genetic data availability raise concerns for phylogenetic studies, as they suggest that the current genetic knowledge of helminth parasites is neither random nor representative of existing biodiversity. Consequently, phylogenetic trees based on biased data may not accurately capture the true evolutionary relationships among parasite taxa, as well as trends in the evolution of key traits, such as host specificity. Comprehensive and unbiased data collection efforts are needed to improve the accuracy of phylogenetic analyses and our understanding of parasite evolution.
{"title":"Biased availability of genetic data for parasites: it’s all about the host","authors":"Chen-Hua Li, Robert Poulin","doi":"10.1016/j.ijpara.2025.05.007","DOIUrl":"10.1016/j.ijpara.2025.05.007","url":null,"abstract":"<div><div>Advances in DNA sequencing technology have significantly increased the availability of publicly accessible genetic data across various parasite taxa. This genetic data is crucial for elucidating gene flow, connectivity among parasite populations, cryptic diversity, and resolving parasite phylogenies. However, phylogenetic reconstructions are often hindered by incomplete genetic data across taxa, particularly in less-studied taxa like parasitic helminths. We tested whether the availability of genetic data for helminth species is biased and influenced by which hosts they infect using the largest known helminth life cycle database. We compared helminth species with genetic sequences in the NCBI Nucleotide and Gene databases against those without publicly available sequences. We examined the impact of the number of definitive hosts, their higher taxon, conservation status, and habitat on genetic data availability. Our findings reveal significant biases in existing genetic data for helminth parasites, influenced by host-related factors. Helminth species with more definitive hosts species, hosts of conservation concerns, and/or those with terrestrial hosts are more likely to have genetic data available. These biases in genetic data availability raise concerns for phylogenetic studies, as they suggest that the current genetic knowledge of helminth parasites is neither random nor representative of existing biodiversity. Consequently, phylogenetic trees based on biased data may not accurately capture the true evolutionary relationships among parasite taxa, as well as trends in the evolution of key traits, such as host specificity. Comprehensive and unbiased data collection efforts are needed to improve the accuracy of phylogenetic analyses and our understanding of parasite evolution.</div></div>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":"55 12","pages":"Pages 657-663"},"PeriodicalIF":3.2,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144208498","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-01DOI: 10.1016/j.ijpara.2025.09.008
Wei Wei, Rui Shi, Cheng Peng, Zhengyi Li, Lu An, Jingyi Wen, Rui Wang
Cryptosporidiosis, a zoonotic disease caused by Cryptosporidium, is a significant threat to both livestock and human health. In this study, we systematically reviewed the prevalence of Cryptosporidium infection in bovines and ovines in China. We conducted a comprehensive search of six databases, including PubMed, Web of Science, ScienceDirect, CNKI, Wanfang, and VIP, covering studies published up to May 15, 2025. A total of 276 studies from 31 provinces were included in the meta-analysis. The overall pooled prevalence of Cryptosporidium infection was 17 % (95 % CI: 15 %-19 %) in bovines and 12 % (95 % CI: 8 %-15 %) in ovines. The most prevalent species were C. parvum (26.87 %; 95 % CI: 17.69 %-37.14 %) in bovines and C. xiaoi (26.80 %; 95 % CI: 11.81 %-45.21 %) in ovines, with dairy cattle and goats identified as the highest-risk hosts. Significant risk factors included region, age, host species, presence of diarrhoea, and sampling year. Higher infection rates were observed in Northwestern China, in younger ruminants (<6 months for bovines and <3 months for ovines), in free-ranging ruminants, and in those with diarrhoea. Prevalence was also higher in studies conducted before 2004. These findings provide important epidemiological insights and highlight the need for targeted control strategies that address key risk factors in the Chinese ruminant industry, and underscore the importance of a One Health approach that integrates animal, human, and environmental health.
{"title":"Meta-analysis and systematic review of the prevalence and risk factors of Cryptosporidium infection in ruminants in China.","authors":"Wei Wei, Rui Shi, Cheng Peng, Zhengyi Li, Lu An, Jingyi Wen, Rui Wang","doi":"10.1016/j.ijpara.2025.09.008","DOIUrl":"10.1016/j.ijpara.2025.09.008","url":null,"abstract":"<p><p>Cryptosporidiosis, a zoonotic disease caused by Cryptosporidium, is a significant threat to both livestock and human health. In this study, we systematically reviewed the prevalence of Cryptosporidium infection in bovines and ovines in China. We conducted a comprehensive search of six databases, including PubMed, Web of Science, ScienceDirect, CNKI, Wanfang, and VIP, covering studies published up to May 15, 2025. A total of 276 studies from 31 provinces were included in the meta-analysis. The overall pooled prevalence of Cryptosporidium infection was 17 % (95 % CI: 15 %-19 %) in bovines and 12 % (95 % CI: 8 %-15 %) in ovines. The most prevalent species were C. parvum (26.87 %; 95 % CI: 17.69 %-37.14 %) in bovines and C. xiaoi (26.80 %; 95 % CI: 11.81 %-45.21 %) in ovines, with dairy cattle and goats identified as the highest-risk hosts. Significant risk factors included region, age, host species, presence of diarrhoea, and sampling year. Higher infection rates were observed in Northwestern China, in younger ruminants (<6 months for bovines and <3 months for ovines), in free-ranging ruminants, and in those with diarrhoea. Prevalence was also higher in studies conducted before 2004. These findings provide important epidemiological insights and highlight the need for targeted control strategies that address key risk factors in the Chinese ruminant industry, and underscore the importance of a One Health approach that integrates animal, human, and environmental health.</p>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145225320","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-01DOI: 10.1016/j.ijpara.2025.05.006
Thomas Romig , Christian Kehlmaier , Andreas Weck-Heimann , Sven Mecke , Anke Dinkel , Marion Wassermann , Raffael Ernst
We report on the rediscovery of a presumably lost type specimen of Echinococcus multilocularis (Leuckart, 1863). The study establishes the mitochondrial genome of E. multilocularis from a historical syntype specimen and explores modern genomic techniques to clarify its identity in European populations. Despite initial failure in nested PCR, high-throughput next-generation sequencing (NGS) successfully assembled the mitochondrial genome from post-capture reads, revealing a 13,738 bp sequence. This genome contained 12 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. Phylogenetic analysis placed E. multilocularis in a clade with E. shiquicus. Comparison of mitochondrial sequences confirmed a 100% identity with modern isolates from western-central Europe, demonstrating the persistence of this lineage over 200 years. The study emphasises the value of museum specimens and advanced genomic techniques in historical taxonomy, showcasing the synergy of forensic museum research and modern DNA technologies. This research stabilises the nomenclature of E. multilocularis and therefore contributes to better understanding its epidemiological role in human disease.
{"title":"Rediscovery of a name-bearing type of Echinococcus multilocularis (Leuckart, 1863) by museum forensics: a cold case revisited","authors":"Thomas Romig , Christian Kehlmaier , Andreas Weck-Heimann , Sven Mecke , Anke Dinkel , Marion Wassermann , Raffael Ernst","doi":"10.1016/j.ijpara.2025.05.006","DOIUrl":"10.1016/j.ijpara.2025.05.006","url":null,"abstract":"<div><div>We report on the rediscovery of a presumably lost type specimen of <em>Echinococcus multilocularis</em> (Leuckart, 1863). The study establishes the mitochondrial genome of <em>E. multilocularis</em> from a historical syntype specimen and explores modern genomic techniques to clarify its identity in European populations. Despite initial failure in nested PCR, high-throughput next-generation sequencing (NGS) successfully assembled the mitochondrial genome from post-capture reads, revealing a 13,738 bp sequence. This genome contained 12 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. Phylogenetic analysis placed <em>E. multilocularis</em> in a clade with <em>E. shiquicus</em>. Comparison of mitochondrial sequences confirmed a 100% identity with modern isolates from western-central Europe, demonstrating the persistence of this lineage over 200 years. The study emphasises the value of museum specimens and advanced genomic techniques in historical taxonomy, showcasing the synergy of forensic museum research and modern DNA technologies. This research stabilises the nomenclature of <em>E. multilocularis</em> and therefore contributes to better understanding its epidemiological role in human disease.</div></div>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":"55 12","pages":"Pages 649-655"},"PeriodicalIF":3.2,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144208499","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The rapid loss of biodiversity driven by anthropogenic pressures highlights the urgent need for improved species identification methods. Parasites, vital ecosystem regulators, are being lost at disproportionate rates, with amphistomes—a broadly distributed group of trematode parasites, infecting all major vertebrate groups—facing significant challenges. Many amphistome species remain undescribed, and reference sequences for known species are scarce, partly due to the reliance on labour-intensive identification methods, such as Scanning Electron Microscopy (SEM) and median sagittal sections. While sagittal sectioning is particularly informative for diagnostic traits, it is destructive, requires toxic chemicals, and demands specialized personnel. In this study, we evaluated micro-computed tomography (micro-CT) imaging as a non-destructive alternative for identifying three amphistome species, Gigantocotyle gigantocotyle (Brandes in Otto, 1896); Carmyerius aff. chabaudi van Strydonck, 1970; and Carmyerius aff. endopapillatus Dollfus, 1962, isolated from the common hippopotamus, Hippopotamus amphibius Linnaeus, 1758. By comparing micro-CT imaging with traditional sectioning, SEM and incorporating molecular barcoding, we reveal the need for a taxonomic revision of Carmyerius, focussed on identifying new diagnostic characters, to better reflect species boundaries. Moreover, the integrated taxonomic effort represented in this work uncovered evidence that C. aff. chabaudi is a new species record from the common hippopotamus. Additionally, we provide high-resolution images of the original type specimens of Carmyerius cruciformis (Leiper, 1910) and G. gigantocotyle and designate new lectotypes and paralectotypes. Our findings demonstrate that micro-CT imaging is a powerful, non-invasive tool for amphistome identification, facilitating access to fragile natural history collections and advancing integrative taxonomy.
{"title":"Innovating stomach fluke identification: an integrative approach combining Micro-CT imaging and molecular tools","authors":"Ruben Schols , Arnaud Henrard , Jonathan Brecko , Aspire Mudavanhu , Emilie Goossens , Natascha Steffanie , Sarah Clegg , Maarten P.M. Vanhove , Tine Huyse","doi":"10.1016/j.ijpara.2025.05.002","DOIUrl":"10.1016/j.ijpara.2025.05.002","url":null,"abstract":"<div><div>The rapid loss of biodiversity driven by anthropogenic pressures highlights the urgent need for improved species identification methods. Parasites, vital ecosystem regulators, are being lost at disproportionate rates, with amphistomes—a broadly distributed group of trematode parasites, infecting all major vertebrate groups—facing significant challenges. Many amphistome species remain undescribed, and reference sequences for known species are scarce, partly due to the reliance on labour-intensive identification methods, such as Scanning Electron Microscopy (SEM) and median sagittal sections. While sagittal sectioning is particularly informative for diagnostic traits, it is destructive, requires toxic chemicals, and demands specialized personnel. In this study, we evaluated micro-computed tomography (micro-CT) imaging as a non-destructive alternative for identifying three amphistome species, <em>Gigantocotyle gigantocotyle</em> (Brandes in Otto, 1896); <em>Carmyerius</em> aff. <em>chabaudi</em> van Strydonck, 1970; and <em>Carmyerius</em> aff. <em>endopapillatus</em> Dollfus, 1962, isolated from the common hippopotamus, <em>Hippopotamus amphibius</em> Linnaeus, 1758. By comparing micro-CT imaging with traditional sectioning, SEM and incorporating molecular barcoding, we reveal the need for a taxonomic revision of <em>Carmyerius</em>, focussed on identifying new diagnostic characters, to better reflect species boundaries. Moreover, the integrated taxonomic effort represented in this work uncovered evidence that <em>C</em>. aff. <em>chabaudi</em> is a new species record from the common hippopotamus. Additionally, we provide high-resolution images of the original type specimens of <em>Carmyerius cruciformis</em> (Leiper, 1910) and <em>G. gigantocotyle</em> and designate new lectotypes and paralectotypes. Our findings demonstrate that micro-CT imaging is a powerful, non-invasive tool for amphistome identification, facilitating access to fragile natural history collections and advancing integrative taxonomy.</div></div>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":"55 12","pages":"Pages 615-630"},"PeriodicalIF":3.2,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144132332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}