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RNA interference as a tool for functional genomics in parasitic helminths RNA干扰作为寄生蠕虫功能基因组学的工具。
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.ijpara.2025.07.002
Sandra Grossi Gava, Marina Moraes Mourão
Helminths including flatworms, tapeworms, flukes, and roundworms are the causal agents of several Neglected Tropical Diseases (NTDs), affecting the health of humans and animals worldwide and resulting in significant economic losses. Given the importance of helminth infections and the complex life cycle of those parasites, often including multiple life stages and/or hosts, it is critical to have a broad understanding of the parasites’ biology to hamper their dissemination. In this context, the RNA interference (RNAi) methodology arose as a research tool in molecular parasitology, enabling the functional characterization of several genes in helminths. Despite the great revolution using CRISPR to interrogate gene function, RNAi has been more widely deployed in diverse parasites. In this review, we will briefly appraise the RNAi mechanistic aspects, describe works that were pioneers in its standardization and application in different helminths species, and extensively explore studies that have successfully used this tool to investigate gene function in helminth parasites.
包括扁形虫、绦虫、吸虫和蛔虫在内的蠕虫是几种被忽视的热带病(NTDs)的致病因子,影响全世界人类和动物的健康,并造成重大经济损失。考虑到寄生虫感染的重要性和这些寄生虫复杂的生命周期,通常包括多个生命阶段和/或宿主,对寄生虫的生物学有一个广泛的了解是至关重要的,以阻碍它们的传播。在这种背景下,RNA干扰(RNAi)方法作为分子寄生虫学的一种研究工具出现,使蠕虫的几个基因的功能表征成为可能。尽管使用CRISPR来询问基因功能是一场巨大的革命,但RNAi在各种寄生虫中得到了更广泛的应用。在本文中,我们将简要介绍RNAi的机制,描述其在不同种类蠕虫中标准化和应用的先驱工作,并广泛探索成功使用该工具研究寄生虫基因功能的研究。
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引用次数: 0
Gyrodactylidae from Fundulus heteroclitus (Fundulidae, Cyprinodontiformes) in South Carolina, USA, and insights on the historical ecology of the gyrodactylids of Fundulidae 美国南卡罗莱纳异闭底蝇(底蝇科,环齿目)的旋齿蝇科及其历史生态学的认识。
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.ijpara.2025.06.006
Juliana Rosa Matias Ciccheto , Emanuel L. Razzolini , Isaure de Buron , Walter A Boeger
Mummichog (Fundulus heteroclitus) hosts a diverse array of parasites, including several species of Gyrodactylidae. We surveyed populations of mummichogs across three estuarine systems in South Carolina, USA, for gyrodactylids and studied their taxonomy, phylogenetics, and evolutionary history. Molecular analysis using concatenated sequences of 18S, ITS, and 5.8S rDNA fragments and morphology support the synonymization of Fundulotrema with Swingleus, as the former was shown paraphyletic. Five species of Gyrodactylidae were encountered. Gyrodactylus kritskyi n. sp. is described and four other species are redescribed: G. stephanus, Swingleus polyclithroides, S. prolongis n. comb., and S. porterense n. comb. Analyses of the phylogeny, tanglegram, and Euler diagram of gyrodactylids of Fundulidae reveal a complex mosaic of historical processes, including ecological fitting, oscillation, taxon pulses, and putative hybridization events driving host-parasite associations observed, fully compatible with the Stockholm Paradigm. These findings underscore the dynamic nature of gyrodactylid evolution within Fundulidae and highlight the utility of this model system for studying host-parasite diversification and evolution of host repertoire.
Mummichog (Fundulus heteroclitus)是多种寄生虫的宿主,其中包括几种Gyrodactylidae。我们调查了美国南卡罗来纳州三个河口系统的mummichogs种群,研究了它们的分类、系统发育和进化历史。利用18S, ITS和5.8S rDNA片段的串联序列进行分子分析,支持Fundulotrema与Swingleus的同义性,因为前者显示为副属。发现了五种旋虫科。本文描述了棘球虱(Gyrodactylus kritskyi n. sp.),并重新描述了其他4个种:棘球虱(g.s stephanus)、棘球虱(Swingleus polyclithroides)、棘球虱(s.prolongis n. comb)。和S. porterense n. comb。对Fundulidae gyrodactylids的系统发育、纠缠图和欧拉图的分析揭示了一个复杂的历史过程,包括生态拟合、振荡、分类单元脉冲和驱动宿主-寄生虫关联的假定杂交事件,完全符合斯德哥尔摩范式。这些发现强调了旋虫进化的动态性,并强调了该模型系统在研究宿主-寄生虫多样化和宿主种群进化方面的实用性。
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引用次数: 0
Regulatory and coding changes underlying development and host detection in vertebrate-parasitizing blowflies 脊椎动物寄生蝇发育和寄主检测的调控和编码变化。
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.ijpara.2025.10.004
Pedro Mariano-Martins, Diniz Lima Ferreira, Vanessa Araujo Soares da Cunha, Carolina Kurotusch Canettieri, Letícia Chiara Baldassio de Paula, Tatiana Teixeira Torres
The evolutionary transition to parasitism in the family Calliphoridae serves as a compelling model to study the genetic and molecular basis of ecological adaptations. In this study, we sequenced and annotated the genomes of Chrysomya megacephala, Chrysomya putoria, and Lucilia eximia to provide a foundation to investigate the evolution of coding and non-coding sequences within the family Calliphoridae. Combining these new resources with publicly available genomes from 11 representatives of the family, we focused on two species with distinct parasitic strategies, Cochliomyia hominivorax –a flesh-eating parasite–, and Protophormia azurea –a blood-feeding parasite– to identify unique and shared genomic features associated with the evolution of the parasitic lifestyle. Comparative analyses of conserved non-exonic elements revealed 44 genes inferred to convergently evolve at an accelerated evolutionary rate, 41 % of which associate with development, highlighting their potential role in larval feeding specialization. Analyses of coding regions identified genes, including those linked to olfaction, taste, chitin and cuticle formation, inferred to evolve at accelerated rates in both Co. hominivorax and P. azurea. This study advances our understanding of aspects of the evolution of genomic regions of members of the family under natural selection and their potential contribution to parasitism.
寄生蜂科向寄生蜂的进化转变为研究寄生蜂生态适应的遗传和分子基础提供了一个令人信服的模型。本研究对大头金蝇(Chrysomya megacephala)、皮肤金蝇(Chrysomya putoria)和绿蝇(Lucilia eximia)的基因组进行了测序和注释,为研究金蝇科编码序列和非编码序列的进化提供了基础。将这些新资源与来自该家族11个代表的公开可用基因组相结合,我们将重点放在两个具有不同寄生策略的物种上,分别是食肉寄生虫Cochliomyia hominivorax和吸血寄生虫protophoria azurea,以确定与寄生生活方式进化相关的独特和共享的基因组特征。对保守的非外显子元件的比较分析显示,44个基因被推断以加速的进化速度趋同进化,其中41%与发育有关,突出了它们在幼虫捕食专业化中的潜在作用。通过对编码区域的分析,鉴定出了与嗅觉、味觉、几丁质和角质层形成有关的基因,推断出这些基因在Co. hominivorax和P. azurea中都以更快的速度进化。这项研究促进了我们对自然选择下家庭成员基因组区域进化及其对寄生的潜在贡献的理解。
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引用次数: 0
Variability among taxonomists in helminth species discrimination decisions: a noise audit 分类学家在蠕虫物种歧视决策中的变异性:噪声审计。
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.ijpara.2025.06.003
Robert Poulin, Jerusha Bennett, Bronwen Presswell
Determining whether or not superficially similar helminth specimens belong to the same species can be challenging, even for expert taxonomists. The possibility of cryptic species and host-induced morphological variation, combined with the lack of universally accepted thresholds for what can be considered intraspecific genetic variation, are largely to blame. In the end, decisions come down to the judgment of taxonomists. As with other domains of human judgment, however, taxonomic decisions are subject to noise, i.e., differences of opinions among taxonomists when presented with the same evidence. Here, we quantify this noise and test the role of past experience in taxonomic decision-making. We presented morphological, genetic and host data on 15 sets of hypothetical but realistic trematode specimens, each split into two groups, and asked many of the world’s top trematode taxonomists to decide whether the two groups belonged to the same species, to different species, or they were not sure. Working independently on the exact same information, the taxonomists rendered species delimitation decisions that were largely inconsistent with each other, and unrelated to their past experience (measured as years of experience or numbers of published species descriptions). The inevitable conclusion is that whether two sets of trematode specimens are considered to represent the same species or two different species depends entirely on the particular taxonomist who examines them. We propose three strategies to reduce noise and achieve greater consistency and repeatability in species delimitation among different taxonomists: establishment of clear species discrimination guidelines, decomposition of the evidence into its separate components prior to a final decision, and aggregation of independent judgements from two or more experienced taxonomists. Limiting subjectivity in species delimitation decisions is essential if taxonomy is to continue underpinning other disciplines, from biodiversity and ecological research to conservation biology and wildlife management.
确定表面相似的蠕虫标本是否属于同一物种可能是一项挑战,即使对专家分类学家来说也是如此。隐藏物种和宿主诱导的形态变异的可能性,加上缺乏普遍接受的种内遗传变异的阈值,在很大程度上是罪魁祸首。最终,决定取决于分类学家的判断。然而,与人类判断的其他领域一样,分类学的决定也会受到噪音的影响,即,当提出相同的证据时,分类学家之间的意见分歧。在这里,我们量化了这种噪音,并测试了过去的经验在分类决策中的作用。我们提供了15组假设但真实的吸虫标本的形态、遗传和宿主数据,每组被分成两组,并要求许多世界顶级吸虫分类学家判断这两组是属于同一物种,不同物种,还是他们不确定。在完全相同的信息上独立工作,分类学家们做出的物种划分决定在很大程度上彼此不一致,而且与他们过去的经验(以多年的经验或发表的物种描述的数量来衡量)无关。不可避免的结论是,两组吸虫标本是否被认为代表同一物种或两个不同的物种完全取决于检查它们的特定分类学家。我们提出了三种策略,以减少不同分类学家之间的物种划分噪音,并提高一致性和可重复性:建立明确的物种区分准则,在最终决定之前将证据分解为单独的组成部分,以及汇总两个或更多有经验的分类学家的独立判断。如果分类学要继续支撑其他学科,从生物多样性和生态研究到保护生物学和野生动物管理,那么限制物种划界决策中的主观性是必不可少的。
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引用次数: 0
Aims and scope and Editorial board 目标、范围和编委会
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2026-01-01 DOI: 10.1016/S0020-7519(26)00006-8
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引用次数: 0
The first draft genome of Cryptosporidium serpentis reveals metabolic divergence from intestinal Cryptosporidium species 蛇形隐孢子虫基因组初稿揭示了肠道隐孢子虫的代谢差异。
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.ijpara.2025.07.003
Tianpeng Wang , Chengyi Chen , Qi Wang , Wanyi Huang , Tianyi Hou , Falei Li , Gaoming Lou , Na Li , Lihua Xiao , Yaoyu Feng , Jiayu Li , Yaqiong Guo
Cryptosporidium serpentis is a host-adapted Cryptosporidium species that infects ectothermic reptiles, including snakes and lizards. In addition, C. serpentis is one of the few Cryptosporidium species that parasitize the stomach of the hosts. To date, the genomic data for gastric Cryptosporidium species are exclusively available for Cryptosporidium andersoni and Cryptosporidium muris, both of which infect warm-blooded hosts. To enhance our understanding of genomic features of C. serpentis, we undertook the Illumina-based whole genome sequencing of four C. serpentis isolates, and generated the first C. serpentis draft genome of 9.11 Mb in 292 scaffolds and with an N50 of 102,002 bp. Comparative genomic analyses revealed that C. serpentis shares high similarity in genomic characteristics with C. andersoni and C. muris, including genomic identity, gene content, and gene organization. We observed aerobic metabolism and a partial conventional electron transport chain in the three gastric species, which are absent in the intestinal Cryptosporidium species. This divergent metabolism of the three gastric species is likely associated with their parasitism in the stomach of hosts. However, genes involved in purine salvage pathway in C. parvum are lost in C. serpentis as well as in other gastric Cryptosporidium species. These specific gene losses may provide more insights into the anabolic capabilities of Cryptosporidium. A significant reduction in the number of multi-copy genes potentially involving the secretory pathogenesis determinants was observed in C. serpentis, which was also found in the other species with a narrow host range. Compared with the other gastric species, 19 unique genes and 67 divergent orthogroups with low identity were identified in C. serpentis. These genes/orthogroups could provide potential insights into investigating the host preference of C. serpentis and further biological studies should be performed on these genes.
蛇隐孢子虫是一种适应宿主的隐孢子虫,感染恒温爬行动物,包括蛇和蜥蜴。此外,蛇隐孢子虫是少数寄生在寄主胃上的隐孢子虫之一。迄今为止,胃隐孢子虫物种的基因组数据仅适用于安德氏隐孢子虫和鼠隐孢子虫,这两种隐孢子虫都感染温血宿主。为了进一步了解蛇蛇的基因组特征,我们基于illumina对4个蛇蛇分离株进行了全基因组测序,在292个支架中获得了蛇蛇基因组草图,全长9.11 Mb, N50值为102,002 bp。比较基因组分析表明,蛇蛇在基因组特征、基因含量和基因组织等方面与安德氏C.和墨氏C.具有高度的相似性。我们在三种胃隐孢子虫中观察到有氧代谢和部分常规电子传递链,这在肠道隐孢子虫中是不存在的。这三种胃物种的不同代谢可能与它们在宿主胃中的寄生有关。然而,在小隐孢子虫中参与嘌呤回收途径的基因在蛇隐孢子虫和其他胃隐孢子虫中丢失。这些特定的基因丢失可能为隐孢子虫的合成代谢能力提供更多的见解。在C. serentis中观察到可能涉及分泌性发病决定因素的多拷贝基因数量显著减少,这在其他宿主范围较窄的物种中也发现了。与其他胃属植物相比,蛇腹蛇属植物共鉴定出19个独特基因和67个低同源性的不同正群。这些基因/正群可以为研究蛇舌蛇的寄主偏好提供潜在的见解,并应对这些基因进行进一步的生物学研究。
{"title":"The first draft genome of Cryptosporidium serpentis reveals metabolic divergence from intestinal Cryptosporidium species","authors":"Tianpeng Wang ,&nbsp;Chengyi Chen ,&nbsp;Qi Wang ,&nbsp;Wanyi Huang ,&nbsp;Tianyi Hou ,&nbsp;Falei Li ,&nbsp;Gaoming Lou ,&nbsp;Na Li ,&nbsp;Lihua Xiao ,&nbsp;Yaoyu Feng ,&nbsp;Jiayu Li ,&nbsp;Yaqiong Guo","doi":"10.1016/j.ijpara.2025.07.003","DOIUrl":"10.1016/j.ijpara.2025.07.003","url":null,"abstract":"<div><div><em>Cryptosporidium serpentis</em> is a host-adapted <em>Cryptosporidium</em> species that infects ectothermic reptiles, including snakes and lizards. In addition, <em>C. serpentis</em> is one of the few <em>Cryptosporidium</em> species that parasitize the stomach of the hosts. To date, the genomic data for gastric <em>Cryptosporidium</em> species are exclusively available for <em>Cryptosporidium andersoni</em> and <em>Cryptosporidium muris</em>, both of which infect warm-blooded hosts. To enhance our understanding of genomic features of <em>C. serpentis</em>, we undertook the Illumina-based whole genome sequencing of four <em>C. serpentis</em> isolates, and generated the first <em>C. serpentis</em> draft genome of 9.11 Mb in 292 scaffolds and with an N50 of 102,002 bp. Comparative genomic analyses revealed that <em>C. serpentis</em> shares high similarity in genomic characteristics with <em>C. andersoni</em> and <em>C. muris</em>, including genomic identity, gene content, and gene organization. We observed aerobic metabolism and a partial conventional electron transport chain in the three gastric species, which are absent in the intestinal <em>Cryptosporidium</em> species. This divergent metabolism of the three gastric species is likely associated with their parasitism in the stomach of hosts. However, genes involved in purine salvage pathway in <em>C. parvum</em> are lost in <em>C. serpentis</em> as well as in other gastric <em>Cryptosporidium</em> species. These specific gene losses may provide more insights into the anabolic capabilities of <em>Cryptosporidium</em>. A significant reduction in the number of multi-copy genes potentially involving the secretory pathogenesis determinants was observed in <em>C. serpentis</em>, which was also found in the other species with a narrow host range. Compared with the other gastric species, 19 unique genes and 67 divergent orthogroups with low identity were identified in <em>C. serpentis</em>. These genes/orthogroups could provide potential insights into investigating the host preference of <em>C. serpentis</em> and further biological studies should be performed on these genes.</div></div>","PeriodicalId":13725,"journal":{"name":"International journal for parasitology","volume":"56 1","pages":"Article 104710"},"PeriodicalIF":3.2,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144667590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Long-term presence of emerging pathogens in island honey bee colonies. 岛屿蜂群中新兴病原体的长期存在。
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2025-12-30 DOI: 10.1016/j.ijpara.2025.104767
Micaela Sánchez-Aroca, Irene Muñoz, Pilar De la Rúa, Vicente Martínez-López

Honey bees are recognised as the primary pollinators of most agricultural crops and numerous wild plant species worldwide. However, the colony losses reported over recent decades pose a serious threat to this essential ecosystem service. The spread of pathogens has been identified as a significant factor contributing to the decline of honey bee populations. Consequently, there is a considerable interest in expanding our knowledge on the prevalence of emerging pathogens on honey bee colonies, particularly trypanosomatids and neogregarines. Herein, we conducted a spatio-temporal analysis of the prevalence of trypanosomatids (Lotmaria passim and Crithidia mellificae) and a neogregarine (Apicystis bombi) in honey bee populations across the Canary Islands sampled over a 20-year period (1998-2017). We also examined whether pathogen prevalence was associated with the introduction of foreign honey bee queens to the islands and the implementation of a conservation programme of the local Canarian black honey bee. Our results indicate that L. passim has been present in the Canary Islands since at least 1998, whereas C. mellificae was not detected. This finding represents the earliest known global record of the L. passim worldwide. Apicystis bombi was found on several islands during the study period, though at low frequency. The prevalence of L. passim did not exhibit any correlation with the introduction of foreign honey bee queens, unlike other pathogens and parasites such as Nosema ceranae and Varroa destructor. Notably, the implementation of long-standing conservation measures in La Palma was associated with a higher prevalence of L. passim compared to Gran Canaria. These results suggest that L. passim may have been present in the Canary Islands prior to the introduction of foreign honey bees in recent decades. Further analyses of historical samples from additional regions, particularly from geographically isolated areas such as islands, are necessary to untangle the spread history of L. passim in honey bee populations.

蜜蜂被认为是世界上大多数农作物和许多野生植物的主要传粉者。然而,近几十年来报道的蜂群损失对这一重要的生态系统服务构成了严重威胁。病原体的传播已被确定为导致蜜蜂数量下降的一个重要因素。因此,有一个相当大的兴趣,扩大我们的知识流行的新兴病原体在蜂群,特别是锥虫和新格林虫。在此,我们对加那利群岛蜜蜂种群中锥虫虫(Lotmaria passim和Crithidia mellificae)和新花蜜虫(Apicystis bombi)的流行情况进行了时空分析,取样时间为20年(1998-2017年)。我们还研究了病原体的流行是否与外来蜂王的引入和当地加那利黑蜜蜂保护计划的实施有关。结果表明,至少从1998年起,加那利群岛就存在着paspasm,而没有检测到C. mellificae。这一发现代表了世界范围内已知的最早的全球记录。在研究期间,在几个岛屿上发现了炸弹尖孢子虫,尽管频率很低。与其他病原体和寄生虫(如微蝇和破坏瓦螨)不同,被动乳杆菌的流行与外来蜂王的引入没有任何相关性。值得注意的是,与大加那利岛相比,拉帕尔马岛实施了长期的保护措施,与此相关的是pasm的患病率更高。这些结果表明,在近几十年来引入外国蜜蜂之前,加那利群岛可能已经存在了白斑蜜蜂。进一步分析来自其他地区的历史样本,特别是来自地理上孤立的地区,如岛屿,是必要的,以解开蜜蜂种群中的传播历史。
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引用次数: 0
Uptake of Ascaridia galli extracellular vesicles by chicken immune cells varies according to worm sex and in vitro culture duration. 鸡免疫细胞对鸡蛔虫细胞外囊泡的吸收随虫性和体外培养时间的不同而不同。
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2025-12-29 DOI: 10.1016/j.ijpara.2025.104765
Anna Sophia Feix, Konstantinos Papanikolaou, Rikke Brødsgaard Kjærup, Chanaka Premathilaka, Suranga Kodithuwakku, Alireza Fazeli, Anders Miki Bojesen, Carolina Corral Yélamos, Tina Sørensen Dalgaard

Ascaridia galli (A. galli), a parasitic roundworm that infects chickens poses an economic burden in poultry farming, as it causes ascaridiosis-a disease leading to reduced growth, lower egg production, and immunosuppression. Recently, interest has grown in the parasite's extracellular vesicles (EVs), as they modulate host immune responses and play a key role in host-pathogen interactions. This study aimed to optimize in vitro EV-production from A. galli and assess their uptake by chicken immune cells important for EV mediated host-pathogen communication. Adult worms were collected from infected chickens, sex-sorted, washed, and cultured in vitro. EVs were isolated at various time points using size exclusion chromatography and characterized. DiO-stained EVs were evaluated for uptake into chicken intestinal epithelial cells, macrophages, peripheral blood mononuclear cells and whole blood leukocytes using flow cytometry and confocal microscopy after 4 and 24 h incubation with the parasite derived vesicles. EV-uptake increased significantly from 4 h to 24 h across all tested cell types. Female-derived EVs collected after 24 h of worm culture gave rise to higher uptake than male-derived EVs. However, at the 40 h time point, male EVs gave rise to greater uptake, though overall EV internalization was reduced compared to the 24 h time point. Uptake efficiency varied depending on the EV collection time as well as the host cell type. These findings suggest that both the sex of the worm and the duration of culture influence EV uptake, with 24 h emerging as the optimal in vitro culture duration for production of A. galli derived EVs with potent biological functions. The sex-specific differences highlight potential functional diversity in EV mediated host-pathogen interactions, which need to be assessed in future studies.

鸡蛔虫(a . galli),一种感染鸡的寄生蛔虫,给家禽养殖业带来了经济负担,因为它会引起蛔虫病——一种导致生长减缓、产蛋量下降和免疫抑制的疾病。最近,人们对寄生虫的细胞外囊泡(EVs)越来越感兴趣,因为它们调节宿主免疫反应并在宿主-病原体相互作用中发挥关键作用。本研究旨在优化大肠杆菌的体外生产,并评估鸡免疫细胞对大肠杆菌介导的宿主-病原体交流的吸收情况。从感染的鸡身上收集成虫,进行性别分类、清洗和体外培养。在不同时间点分离ev并对其进行表征。利用流式细胞术和共聚焦显微镜观察了dio染色的ev与寄生虫源性囊泡孵育4和24 h后对鸡肠上皮细胞、巨噬细胞、外周血单个核细胞和全血白细胞的摄取情况。在所有测试的细胞类型中,从4小时到24小时,ev摄取显著增加。培养24小时后收集的雌源性ev比雄源性ev吸收更高。然而,在40小时的时间点,男性电动汽车产生了更大的摄取,尽管与24小时的时间点相比,电动汽车的整体内化有所减少。吸收效率随EV收集时间和宿主细胞类型的不同而变化。这些发现表明,蠕虫的性别和培养时间都会影响EV的摄取,24小时是产生具有强大生物学功能的galli衍生EV的最佳体外培养时间。性别特异性差异突出了EV介导的宿主-病原体相互作用的潜在功能多样性,这需要在未来的研究中进行评估。
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引用次数: 0
Unveiling hidden parasite diversity: Long-read mitogenomics in Eimeriidae and Haemosporida (Eukaryota: Apicomplexa). 揭示隐藏的寄生虫多样性:艾虫科和血孢子虫的长读有丝分裂基因组学(真核生物:顶复合体)。
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2025-12-29 DOI: 10.1016/j.ijpara.2025.104764
Peihang Hong, Sijia Yu, Hau-You Tzeng, Tzu-Chun Chou, Hsin-Yu Lin, Tung Yee Shiu, Yu-Hsuan Lin, Cheng-You Lu, Chao-Min Wang, Cheng-Hung Lai, Shyun Chou, Toshihiro Tokiwa

Mitochondrial genomes of apicomplexan parasites exhibit remarkable structural diversity, ranging from highly reduced linear molecules to circular-mapping concatemers, yet their full characterization has been hindered by technical limitations in resolving complex infections. This study establishes a novel integrated workflow combining one-step PCR amplification with Oxford Nanopore Technologies (ONT) to sequence complete mitochondrial genomes from Eimeriidae and Haemosporida parasites. Successful assembly of 29 high-quality mitogenomes (12 Eimeriidae, 17 Haemosporida) from 15 samples, demonstrating the method's sensitivity. Comparative analyses revealed cryptic mixed/co-infections in 11 samples that were undetectable by Sanger sequencing, highlighting ONT's superior resolution for uncovering true parasite diversity. Phylogenomic reconstruction using the largest Eimeriidae dataset to date confirmed the monophyly of passeriform Isospora and identified a basal position for a novel Caryospora lineage from Ptyas major. In Haemosporida, analysis of 202 mitogenomes revealed non-monophyletic familial relationships. Selection analyses indicated predominant purifying selection in mitochondrial protein-coding genes of Eimeriidae. Our findings underscore the utility of long-read mitogenomics in elucidating complex infection dynamics and provide a scalable framework for biodiversity surveys of understudied apicomplexans parasites, with implications for understanding their evolutionary ecology and host-parasite interactions.

顶复体寄生虫的线粒体基因组表现出显著的结构多样性,从高度还原的线性分子到圆形定位串联体,但它们的完整表征一直受到解决复杂感染的技术限制的阻碍。本研究建立了一种新的集成工作流程,将一步PCR扩增与牛津纳米孔技术(ONT)相结合,对艾蚊科和血孢子虫寄生虫的线粒体全基因组进行测序。从15份样品中成功组装了29个高质量的有丝分裂基因组(12个艾虫科,17个血孢子科),证明了该方法的敏感性。比较分析显示,在Sanger测序无法检测到的11个样本中存在隐性混合/共感染,突出了ONT在发现真正的寄生虫多样性方面的卓越分辨率。利用迄今为止最大的艾虫科数据集进行系统基因组重建,证实了passerform Isospora的单系性,并确定了来自Ptyas major的一个新的核孢子类谱系的基础位置。在血孢子虫中,对202个有丝分裂基因组的分析揭示了非单系的家族关系。选择分析表明,艾梅里亚科线粒体蛋白编码基因的纯化选择占优势。我们的研究结果强调了长读有丝分裂基因组学在阐明复杂感染动力学中的作用,并为未被充分研究的顶复体寄生虫的生物多样性调查提供了一个可扩展的框架,对理解它们的进化生态学和宿主-寄生虫相互作用具有重要意义。
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引用次数: 0
Development and validation of an explainable prediction model for schistosomiasis seropositivity: a population-based screening study in Hunan Province, China. 一种可解释的血吸虫病血清阳性预测模型的开发和验证:中国湖南省一项基于人群的筛查研究。
IF 3.2 2区 医学 Q1 PARASITOLOGY Pub Date : 2025-12-27 DOI: 10.1016/j.ijpara.2025.104766
Yu Zhou, Ling Tang, Mao Zheng, Benjiao Hu, Yanfeng Gong, Liyun Zhu, Liang Shi, Lei Lin, Xinran Yang, Pin Long, Yue Chen, Qingwu Jiang, Yibiao Zhou

Early identification of people at risk of schistosomiasis infection is critical to interrupting disease transmission. We develop and validate an explainable machine learning prediction model that integrates demographic, behavioral, and environmental factors to identify these individuals. A total of 103,707 individuals were included to train and internally validate the model, and 16,574 individuals were used for external validation. The Random Forest (RF) model demonstrated the best discriminative performance among the five machine learning models evaluated. It accurately predicted schistosomiasis seropositivity in both internal validation (AUC = 0.943, F1 score = 0.809) and external validation (AUC = 0.897, F1 score = 0.770) and has been translated into a practical tool to support real-world application. Feature importance analysis indicated that the most significant predictors of schistosomiasis seropositivity included the presence of schistosomiasis symptoms, history of exposure to infected water, endemicity types of the village, gender, and village risk category. Furthermore, the SHapley Additive exPlanation (SHAP) method was employed to explain how these variables influence the prediction outcomes. This study provides a reference for early identification of high-risk populations and facilitates the translation of theoretical modeling studies into practical work applications.

早期发现有血吸虫病感染风险的人对于阻断疾病传播至关重要。我们开发并验证了一个可解释的机器学习预测模型,该模型集成了人口统计、行为和环境因素来识别这些个体。总共有103,707个人被用于训练和内部验证模型,16,574个人被用于外部验证。随机森林(RF)模型在评估的五种机器学习模型中表现出最好的判别性能。该方法在内部验证(AUC = 0.943, F1评分= 0.809)和外部验证(AUC = 0.897, F1评分= 0.770)中均能准确预测血吸虫病血清阳性,并已转化为支持实际应用的实用工具。特征重要性分析表明,血吸虫病血清阳性的最显著预测因子包括血吸虫病症状的存在、接触受感染水的历史、村庄的流行类型、性别和村庄风险类别。此外,采用SHapley加性解释(SHAP)方法来解释这些变量如何影响预测结果。本研究为早期识别高危人群提供了参考,促进了理论建模研究向实际工作应用的转化。
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International journal for parasitology
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