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Diversity of Human Skin Microbiota in Healthcare Workers of South Punjab, Pakistan during COVID-19 2019冠状病毒病期间巴基斯坦南旁遮普省卫生保健工作者皮肤微生物群的多样性
Pub Date : 2023-06-26 DOI: 10.54692/lgujls.2023.0702265
Anosh Arshad Chaudhary, Iqra Arooj, A. Elahi, S. Ijaz, H. Yasmeen
Human skin microflora plays important role in the functioning of skin and is modulated by several intrinsic and extrinsic factors including hygiene practices. During Covid-19 pandemic, focus has been particularly directed towards improving hygiene. We explored the skin microflora of healthcare workers in local population of Multan, Pakistan. A total of 44 samples of skin were collected from healthy workers along with the administration of questionnaire regarding hygiene practices. After isolation, bacteria were characterized by morphology, staining andbiochemical tests. Majority of the workers was 20-30 years old females. Most of them reported to wear gloves during practice, wash hands 8-10 times a day, use sanitizer 8-10 times a week and took bath 12-15 times a month. Isolated microflora (n=110) included Staphylococcus aureus (62%), Escherichia coli (16%), Pseudomonas spp. (9%), Proteus spp. (5%), Enterobacter spp. (5%) and Klebsiella spp. (3%). Presence of pathogens, although in small numbers, emphasizes the necessity of disseminating knowledge regarding adoption and maintenance of hygienic practices, specifically among healthcare workers.
人体皮肤微生物群在皮肤功能中起着重要作用,并受到包括卫生习惯在内的多种内在和外在因素的调节。在2019冠状病毒病大流行期间,重点特别放在改善卫生条件上。我们研究了巴基斯坦木尔坦当地卫生保健工作者的皮肤微生物群。从健康工人身上共收集了44份皮肤样本,并对卫生习惯进行了问卷调查。细菌分离后进行形态学、染色和生化试验。大多数工人是20-30岁的女性。据报道,他们中的大多数人在练习时戴手套,每天洗手8-10次,每周使用8-10次洗手液,每月洗澡12-15次。分离菌群为:金黄色葡萄球菌(62%)、大肠杆菌(16%)、假单胞菌(9%)、变形杆菌(5%)、肠杆菌(5%)和克雷伯氏菌(3%)。病原体的存在,虽然数量很少,但强调了传播关于采用和保持卫生习惯的知识的必要性,特别是在卫生保健工作者中。
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引用次数: 0
Assessment of Visual Perception in Children with Autism Spectrum Disorder 自闭症谱系障碍儿童视觉知觉的评估
Pub Date : 2023-06-26 DOI: 10.54692/lgujls.2023.0702256
Hafiza Iqra Javaid, Shamsa Kanwal, Muhammad Ahmed, Sadia Akbar, Amna Rashid, Saba Yaqoob, T. Faridi
Autism spectrum disease (ASD) is a nervous disorder. In this disease children have sensory processing dysfunction and they unable to communicate, interact, and showed repetition in behaviours. The present study was designed to determine visual impairment frequency in children with autism spectrum disorder (ASD). A descriptive study was performed in Paediatrics Department of Children's Hospital and The Institute of Child Health, Lahore. Data was collected in six months and 52 patients of both gender were considered. A total of 40 boys and 12 girls of 3-8 years old children were included. A structured Questionnaire based on visual perception was designed to determine the visual sensory processing issues in children with an autism spectrum disorder. The findings showed a strong difficulties in the visual sense particularly in differentiation among the colours and eye tracking in autism children. It was concluded that sense of sight highly affected in the patients of autism spectrum disorder.
自闭症谱系疾病(ASD)是一种神经障碍。在这种疾病中,儿童有感觉处理功能障碍,他们无法沟通,互动,并表现出重复的行为。本研究旨在确定自闭症谱系障碍(ASD)儿童的视力损害频率。在拉合尔儿童医院儿科和儿童健康研究所进行了一项描述性研究。在6个月内收集数据,并考虑了52名男女患者。共包括40名男孩和12名女孩的3-8岁儿童。设计了一份基于视觉感知的结构化问卷,以确定自闭症谱系障碍儿童的视觉感觉加工问题。研究结果表明,自闭症儿童在视觉感知方面存在很大的困难,尤其是在区分颜色和眼球追踪方面。综上所述,自闭症谱系障碍患者的视觉受影响较大。
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引用次数: 0
Deviations in Thyroid and its Regulatory Hormone Profile in Workers Exposed to Welding Fumes 接触焊接烟雾的工人甲状腺及其调节激素谱的偏差
Pub Date : 2023-06-26 DOI: 10.54692/lgujls.2023.0702254
Salman Farooq, Z. W. Aziz, M. A. Iqbal, Kaleem Maqsood, N. Roohi
This study evaluates health risks manifested by the exposure of welding fumes to the labourers working in welding environments. Welding fumes, are the complexes of fluorides, silicates and metal oxides, cause burns, eye damage, hormonal imbalance, organ damage and cataracts. In order to check the changes caused by fumes on thyroid gland, a study was planned to evaluate the variations in thyroid regulatory hormone levels in workers occupationally exposed to welding fumes. For this purpose, blood sampling of the welders (n=24) having exposure to welding fumes was done from different sites in city Lahore, whereas, blood samples of healthy controls (n=24) were collected from University of the Punjab, Lahore. Thyroid (T3 and T4) and its regulatory hormone (TSH) assessment was executed by ELISA. Independent student “t” test at confidence interval of 95% and P < 0.05 was applied. A non-significant decrease of both hormones i.e. T3 and T4 was found in the subjects under study as compared to controls. Levels of TSH in blood serum of workers showed a non-significant increase than healthy controls. Elevated TSH and reduced T3 and T4, although, statistically non-significant, predict chances of hypothyroidism due to chronic exposure to welding fumes. Welders are, therefore, recommended to adopt prophylactic measures and safer techniques in order to avoid direct hazardous exposure to welding fumes
本研究评估在焊接环境中工作的劳工接触焊接烟雾所表现出的健康风险。焊接烟雾是氟化物、硅酸盐和金属氧化物的复合物,会导致烧伤、眼睛损伤、荷尔蒙失衡、器官损伤和白内障。为了检查烟雾对甲状腺的影响,我们计划进行一项研究,评估职业接触焊接烟雾的工人甲状腺调节激素水平的变化。为此目的,从拉合尔市的不同地点对接触焊接烟雾的焊工(n=24)进行了血液采样,而从拉合尔的旁遮普大学收集了健康对照者(n=24)的血液样本。ELISA法测定甲状腺(T3、T4)及其调节激素(TSH)水平。采用独立学生t检验,置信区间为95%,P < 0.05。与对照组相比,在研究对象中发现两种激素即T3和T4均未显著降低。工人血清TSH水平较健康对照组无显著升高。升高的TSH和降低的T3和T4,虽然,统计上不显著,预测甲状腺功能减退的机会,由于长期暴露于焊接烟雾。因此,建议焊工采取预防措施和更安全的技术,以避免直接危险地暴露在焊接烟雾中
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引用次数: 0
In Silico Comparative Metagenomic Analysis of Microbial Communities of Chromium Contaminated Sites 铬污染场地微生物群落的比较宏基因组分析
Pub Date : 2023-06-26 DOI: 10.54692/lgujls.2023.0702264
Rabia Sadiq, Nazia Kanwal, Yasir Rehman
Chromium is one of the highly toxic and carcinogenic heavy metals. Due to increased anthropogenic activities, high concentration of chromium is found in many areas. Many microorganisms have the ability to detoxify chromium. Metagenomics allow us to comprehensively study microbial communities present at different sites without culturing them. The objective of this study was to analyze the abundance of microbial groups in different environments contaminated with chromium. For this purpose, chromium contaminated soil, anaerobic sludge and reactor samples were chosen. 16S rRNA data of these samples was retrieved from NCBI SRA database. The sequences were analyzed by Mothur software accessed via Galaxy server, and were classified using SILVA database. Venn diagram, phylogenetic tree, heatmap, relative abundance graphs and Krona pie charts were generated. Statistical analysis was also performed in the form of AMOVA and HOMOVA tests. According to results of our study, Proteobacteria, Leucobacter, Actinomycetales, Actinobacteria, Arthrobacter, Rhizobiales, Sphingomonas, Bradyrizobium and Nucardioidaceae were present in all the samples. Firmicutes, Planctomycetes, Verrucomicrobia and Bacteroidetes were more abundant in chromium contaminated samples as compared to control samples. The results were also found to be statistically significant. The above-mentioned bacteria can be targeted and studied to discover their roles in bioremediation of chromium contaminated sites.
铬是一种剧毒、致癌的重金属。由于人类活动的增加,在许多地区发现高浓度的铬。许多微生物有解毒铬的能力。宏基因组学允许我们在不培养它们的情况下全面研究存在于不同地点的微生物群落。本研究的目的是分析不同铬污染环境中微生物群的丰度。为此,选择了铬污染土壤、厌氧污泥和反应器样品。这些样本的16S rRNA数据从NCBI SRA数据库中检索。通过Galaxy服务器访问的motherur软件对序列进行分析,并使用SILVA数据库进行分类。生成了维恩图、系统发育树、热图、相对丰度图和Krona饼图。并以AMOVA和HOMOVA检验的形式进行统计分析。根据我们的研究结果,在所有样品中均存在变形杆菌、白杆菌、放线菌、放线菌、节杆菌、根瘤菌、鞘单胞菌、低殖菌和心核科。与对照样品相比,铬污染样品中厚壁菌门、plantomcetes、Verrucomicrobia和Bacteroidetes含量更高。结果也被发现具有统计学意义。对上述细菌进行针对性研究,发现其在铬污染场地生物修复中的作用。
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引用次数: 0
Efficacy of Aloe vera in human health especially against COVID-19 芦荟对人体健康尤其是对抗COVID-19的功效
Pub Date : 2023-06-26 DOI: 10.54692/lgujls.2023.0702263
Fareeha Iqbal, Ambreen Ahmed
The world is full of enchanted natural flora and one of its charmed plant is Aloe vera. It showed the presence of number of novel compounds that engaged in multiple pharmacological activities and are in use to cure diseases. The present review of A. vera is currently about the debacles of COVID-19 i.e., its component involvement as stumbling block for virus proteases. It has also been noted as an effective anti-COVID cloth coating that will bio-actively lower the impact of differential microbe’s expansion along with minimizing the spread of COVID-19. It boosts the immune system in variable circumstances potentially being an anti-inflammatory, anti-cancerous, anti-microbial and wound healing agent. A. vera has made drastic contributions regarding differential human ailments such as wound healing, dental issues, digestive complications, and skin diseases. Moreover, commercial applications of A. vera focuses on manufacturing of bioethanol and nutritionally engaging it in food. Furthermore, inquiries are being carried out to unfold the new wonders of this plant specifically against COVID-19.
世界上充满了迷人的自然植物,其中一种迷人的植物是芦荟。它显示了一些参与多种药理活性的新化合物的存在,并被用于治疗疾病。目前对真丝芽孢杆菌的回顾目前是关于COVID-19的失败,即它的成分参与是病毒蛋白酶的绊脚石。它还被认为是一种有效的抗COVID-19布涂层,可以生物活性地降低差异微生物扩张的影响,同时最大限度地减少COVID-19的传播。它可以在各种情况下增强免疫系统,可能是一种抗炎、抗癌、抗微生物和伤口愈合的药物。芦荟对不同的人类疾病,如伤口愈合、牙齿问题、消化并发症和皮肤病做出了巨大的贡献。此外,芦荟的商业应用主要集中在制造生物乙醇和将其营养加入食品中。此外,正在开展调查,以揭示这种植物专门针对COVID-19的新奇迹。
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引用次数: 0
Brief analysis of Therapeutic Approaches of Type 1 Diabetes Mellitus along with Diagnosis and Screening Methods 浅析1型糖尿病的治疗途径及诊断和筛查方法
Pub Date : 2023-06-26 DOI: 10.54692/lgujls.2023.0702266
Rida Tanveer, Iqra Fasih, Syed Ahmad, Samreen Riaz
Diabetes is an endocrine system disease which is characterized by abnormal elevated glucose levels. Type I Diabetes Mellitus (T1DM) is an autoimmune disorder with early onset, whereas Type 2 Diabetes Mellitus (T2DM) is non-autoimmune form with late onset. Small and large artery complications are the two main categories of diabetes mellitus long term complications. Overproduction of superoxide by the mitochondrial electron transport chain (ETC), leading to oxidative stress, occurs because of pathogenic effects of hyperglycemia. New vessels are fragile and hyper permeable in case of retinopathy in T1DM. T1DM is known to be occurred by beta cell destruction which leads to hyperglycemia and insulin scantiness. In phase 3 T1DM is normally diagnosed, the stage at which the disorder has led to life threatening condition known as diabetic ketoacidosis. To minimize the possibility of serious complication it is necessary to diagnose autoimmunity which is present during first years of life through early screening or by using diagnostic tools. Measuring fasting blood glucose or standard OGTT’s are performed for screening of phase 2 T1DM in the persons which have 1 or more autoantibodies targeting β-cell. The management of type 1 diabetes mellitus is necessary to encourage healthy lifestyle and to control glycaemia conditions in order to avoid severe complication. Pharmacological approaches are the most widely used method for the treatment of T1DM including injectable insulin and sodium glucose cotransporter 2 (SGLT2) inhibitors, Gene therapy and stem cellbased therapies. These are supposed to help in providing life-time freedom from T1DM but there is still a room for debate in this regard.
糖尿病是一种以血糖水平异常升高为特征的内分泌系统疾病。1型糖尿病(T1DM)是一种早发的自身免疫性疾病,而2型糖尿病(T2DM)是一种晚发的非自身免疫性疾病。小动脉和大动脉并发症是糖尿病长期并发症的两大类。由于高血糖的致病作用,线粒体电子传递链(ETC)产生过量的超氧化物,导致氧化应激。在T1DM视网膜病变的情况下,新生血管是脆弱和高渗透性的。已知T1DM是由β细胞破坏导致高血糖和胰岛素缺乏引起的。在第三阶段T1DM通常被诊断出来,在这个阶段,这种疾病会导致危及生命的疾病,即糖尿病酮症酸中毒。为了尽量减少严重并发症的可能性,有必要通过早期筛查或使用诊断工具来诊断生命最初几年存在的自身免疫。测量空腹血糖或标准OGTT用于筛选2期T1DM患者,这些患者有1个或多个针对β细胞的自身抗体。1型糖尿病的管理是必要的,以鼓励健康的生活方式和控制血糖状况,以避免严重的并发症。药物治疗是治疗T1DM最广泛使用的方法,包括注射胰岛素和葡萄糖共转运蛋白2 (SGLT2)抑制剂、基因治疗和干细胞治疗。这些应该有助于提供终身免于T1DM的自由,但在这方面仍有争论的余地。
{"title":"Brief analysis of Therapeutic Approaches of Type 1 Diabetes Mellitus along with Diagnosis and Screening Methods","authors":"Rida Tanveer, Iqra Fasih, Syed Ahmad, Samreen Riaz","doi":"10.54692/lgujls.2023.0702266","DOIUrl":"https://doi.org/10.54692/lgujls.2023.0702266","url":null,"abstract":"Diabetes is an endocrine system disease which is characterized by abnormal elevated glucose levels. Type I Diabetes Mellitus (T1DM) is an autoimmune disorder with early onset, whereas Type 2 Diabetes Mellitus (T2DM) is non-autoimmune form with late onset. Small and large artery complications are the two main categories of diabetes mellitus long term complications. Overproduction of superoxide by the mitochondrial electron transport chain (ETC), leading to oxidative stress, occurs because of pathogenic effects of hyperglycemia. New vessels are fragile and hyper permeable in case of retinopathy in T1DM. T1DM is known to be occurred by beta cell destruction which leads to hyperglycemia and insulin scantiness. In phase 3 T1DM is normally diagnosed, the stage at which the disorder has led to life threatening condition known as diabetic ketoacidosis. To minimize the possibility of serious complication it is necessary to diagnose autoimmunity which is present during first years of life through early screening or by using diagnostic tools. Measuring fasting blood glucose or standard OGTT’s are performed for screening of phase 2 T1DM in the persons which have 1 or more autoantibodies targeting β-cell. The management of type 1 diabetes mellitus is necessary to encourage healthy lifestyle and to control glycaemia conditions in order to avoid severe complication. Pharmacological approaches are the most widely used method for the treatment of T1DM including injectable insulin and sodium glucose cotransporter 2 (SGLT2) inhibitors, Gene therapy and stem cellbased therapies. These are supposed to help in providing life-time freedom from T1DM but there is still a room for debate in this regard.","PeriodicalId":148827,"journal":{"name":"Lahore Garrison University Journal of Life Sciences","volume":"5093 3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132068647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prevalence and Frequency Distribution of HLA-A, HLA-B and HLA-C Alleles in the Punjab, Pakistan 巴基斯坦旁遮普省HLA-A、HLA-B和HLA-C等位基因的患病率和频率分布
Pub Date : 2023-06-26 DOI: 10.54692/lgujls.2023.0702259
Saba Sajjad, Imran Tipu, Muhammad Ali, Muhammad Irfan Fareed, Rana Muhammad Kamran Shabbir, Faiza Samrez, Fareeha Ahmed, Wasiq Ikram, Rubina Dad, Mureed Hussain, Rana Muhammad Mateen, Rukhsana Parveen, Muhammad Sohail Afzal
The Human Leukocyte Antigen (HLA) system, a set of highly polymorphic genes, has been found to play an effective role in the disease resistance and disease susceptibility. In this study, prevalence of class-I alleles of HLA was characterized at HLAA,- B and -C loci in the 216 individuals randomly selected population at different regions of Punjab province of Pakistan. The study revealed that at HLA-A locus the allele 11 was most prevalent with 16.7 % frequency. Similarly, at HLA-B locus the allele 51 was found abundant with 15% frequency and at HLA-C locus the allele 7 was prevalent with 24% frequency. Among the two-locus HLA class I haplotypes, B*08/C*07 was found to be the most prevalent followed by B*35/C*04. Surprisingly, HLA-B*29 and HLA-B*36 alleles were found in the Punjabi population which is contrary to the previous reports.
人类白细胞抗原(HLA)系统是一组高度多态性的基因,已被发现在疾病抵抗和疾病易感性中发挥有效作用。本研究在巴基斯坦旁遮普省不同地区随机选取216例人群,在HLAA、- B和- c位点检测HLA - i类等位基因的流行情况。结果表明,在HLA-A位点,等位基因11最常见,频率为16.7%。同样,等位基因51在HLA-B位点大量存在,频率为15%,等位基因7在HLA-C位点普遍存在,频率为24%。HLA I类单倍型中以B*08/C*07最常见,其次是B*35/C*04。令人惊讶的是,在旁遮普人群中发现了HLA-B*29和HLA-B*36等位基因,这与以往的报道相反。
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引用次数: 0
Prevalence and Management of Endoparasitic Worm load in Ostriches of Different Captive Conditions Housed in Punjab, Pakistan 巴基斯坦旁遮普省不同圈养条件下鸵鸟体内寄生虫负荷的流行及管理
Pub Date : 2023-06-26 DOI: 10.54692/lgujls.2023.0702260
Bushra Nisar Khan, Iqra Islam, Nisar Ahmed, Muhammad Oneeb, Muhammad Azhar, Kiran Saleem, Muhammad Rizwan Khan
Ostrich farming has attained a status of a fast-growing agribusiness in the livestock industry due to the wide range of associated benefits attached to it. This study was designed to assess the prevalence of endoparasites in this economically important bird as well as their treatment to provide better guidelines for successful ostrich farming. The study involved 385 feacal samples of ostriches taken from 55 commercial farms and captive sites Punjab during the period of January 2020 to December 2020. The relevant data and samples were collected from 15 districts of Punjab. Feacal samples were tested against gastrointestinal worm load by using floatation and sedimentation techniques. Ostriches of 11 commercial farms and Lahore Zoo, Jallo Wildlife Park Lahore, UVAS Ostrich farm Pattoki and Bahawalnagar Wildlife Park were found to harbor protozoan parasites such as Eimeria spp. Balantidium coli, and Amoeboid cyst. It was noteworthy that the use of herbal dewormers showed much better results than chemical anthelmintics. Similarly, those wildlife parks where ostriches were given a natural environment showed negative results for endoparasites. At some farms combination of chemical and herbal anthelmintics was also used. The absence of a reliable nutritional management system caused the mortality of ostriches at 40 farms due to gastric problems and choking. The mortality rate at the age of 2-4 months was 73% while mortality of adult birds from 1-7 years was 27%. Among selected farms, 50% of ostriches were facing lameness, leg deformities, and retarded growth due to improper space, a congested environment, and poor feeding systems. Lastly, more research is needed to make this agribusiness flourished.
鸵鸟养殖在畜牧业中已经获得了快速增长的农业综合企业的地位,因为它具有广泛的相关利益。本研究旨在评估这种具有重要经济价值的鸟类体内寄生虫的流行情况及其治疗方法,为成功养殖鸵鸟提供更好的指导。该研究涉及2020年1月至2020年12月期间从旁遮普省55个商业农场和圈养地点采集的385只鸵鸟粪便样本。相关数据和样本来自旁遮普的15个县。采用浮沉技术对粪便样品进行了胃肠道蠕虫负荷测试。11个商业农场和拉合尔动物园、拉合尔Jallo野生动物园、Pattoki UVAS鸵鸟农场和Bahawalnagar野生动物园的鸵鸟中发现了艾美耳虫、大肠平衡杆菌和阿米巴原虫等原生动物寄生虫。值得注意的是,草药驱虫剂的使用效果明显优于化学驱虫剂。同样,那些给鸵鸟提供自然环境的野生动物园对内寄生虫的检测结果为阴性。在一些农场,还使用化学和草药联合驱虫药。由于缺乏可靠的营养管理系统,导致40个农场的鸵鸟因胃部问题和窒息而死亡。2 ~ 4月龄的死亡率为73%,1 ~ 7岁的成鸟死亡率为27%。在选定的农场中,50%的鸵鸟由于空间不当、拥挤的环境和不良的喂养系统而面临跛行、腿部畸形和生长迟缓的问题。最后,需要进行更多的研究,以使这种农业综合企业蓬勃发展。
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引用次数: 0
Impact of Aflatoxins Exposure on Human Health and its Management Strategies 黄曲霉毒素暴露对人体健康的影响及其管理策略
Pub Date : 2023-06-26 DOI: 10.54692/lgujls.2023.0702258
N. Zahra, Muhammad Hassan Raza, Faheem Hafeez, M. Saeed, S. A. Khan, A. Saeed, K. Shahzad
Aflatoxins are common contaminants in human food supplies that affects the world's developing economies. These are cosmopolitan in distribution and found everywhere in nature and can grow under drought, warm, and humid conditions. The aflatoxins are secondary metabolites and mostly found in feed and food products. These areoncogenic, mutagenic, and immunosuppressive in nature. On the basis of the aflatoxin producing fungi, the aflatoxins are roughly split into two distinct groups: those that penetrate in pre-harvest circumstances and those that are generated in post-harvest conditions. Aflatoxins exposure has great public health impact in economically developing nations and lot of research is taking place to reduce its harmful impacts; as a result, we need to establish preventive strategies that are feasible for these high-risk populations. This review provides in-depth information regarding the presence of aflatoxins, their analysis, and potentially harmful consequences on human health, as well as various detoxification approaches.
黄曲霉毒素是人类食物供应中常见的污染物,影响着世界上的发展中经济体。它们分布在世界各地,在自然界中随处可见,可以在干旱、温暖和潮湿的条件下生长。黄曲霉毒素是次生代谢产物,主要存在于饲料和食品中。这些物质具有致癌性、诱变性和免疫抑制性。根据产生黄曲霉毒素的真菌,黄曲霉毒素大致分为两类:在收获前环境中渗透的和在收获后条件下产生的。黄曲霉毒素暴露对经济发展中国家的公众健康有重大影响,人们正在进行大量研究以减少其有害影响;因此,我们需要制定对这些高危人群可行的预防战略。本文综述了黄曲霉毒素的存在、分析及其对人体健康的潜在危害,以及各种解毒方法。
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引用次数: 0
In Silico Analysis of MARS1 Gene to Elucidate Low- Frequency Variants Associated with Interstitial Lung and Liver Disease 用计算机分析MARS1基因阐明与间质性肺和肝脏疾病相关的低频变异
Pub Date : 2023-03-08 DOI: 10.54692/lgujls.2023.0701240
Aamna Syed, R. Mateen, Ayman Naeem, Zainab Asif Mirza, Muhammad Usman Ghani, M. Hussain
Mutation in MARS1 gene is linked to the development of Interstitial lung and liver disease. The current study aimed in silico analysis to predict the most harmful missense and spliced variants of MARS1 that damage the functionality of Methionyl-tRNA synthetase 1 (MARS 1), catalyses the ligation of methionine to tRNA and is essential forprotein biosynthesis. A total of 492 variants were retrieved from the gnomAD database and analysed by CADD, 308 missense variants with PHRED score ≥ 20 were further analysed by CAPICE, META-SNP and CONDEL.85 SNPs detected with deleterious impact on protein structure by screening nsSNPs. Moreover, in-silico stability analysis was done by different tools like DynaMut, DUET, i-Stable2.0 and YASARA. MARS1 protein structure obtained from RCSB PDB (PDB ID: 5GL7) and UCSF Chimera was used for its visualisation. NetSurf-2.0 obtained the analysis of protein functioning by position of residue in the structure. Our results showed that the structure of proteins was significantly deleterious and protein motif and function were changed, we proceeded to use the PROSITE database to forecast the posttranslation modification sites and four significant nsSNPs with protein structure change effects. Splice analysis was conducted by SPiCE, Human Splice Finder. It concludes in silico analysis, genes can determine likely pathogenic variation for further in vitro experimental study.
MARS1基因突变与间质性肺和肝脏疾病的发展有关。目前的研究旨在通过硅分析来预测mar1最有害的错义和剪接变异体,这些变异体会破坏蛋氨酸-tRNA合成酶1 (Methionyl-tRNA合成酶1)的功能,催化蛋氨酸与tRNA的连接,对蛋白质的生物合成至关重要。从gnomAD数据库中检索到492个变异,通过CADD进行分析,308个PHRED评分≥20的错义变异进一步通过CAPICE、META-SNP和condel进行分析。通过筛选nssnp检测到85个对蛋白质结构有有害影响的snp。此外,通过DynaMut、DUET、i-Stable2.0和YASARA等不同的工具进行了硅稳定性分析。利用从RCSB PDB (PDB ID: 5GL7)和UCSF Chimera获得的mar1蛋白结构进行可视化。NetSurf-2.0通过残基在结构中的位置获得蛋白质功能分析。我们的研究结果表明,蛋白质的结构发生了明显的破坏,蛋白质的基序和功能发生了改变,我们利用PROSITE数据库预测了翻译后修饰位点和4个具有蛋白质结构改变作用的显著非单核苷酸多态性。剪接分析由SPiCE, Human Splice Finder进行。结果表明,基因可以确定可能的致病变异,为进一步的体外实验研究提供依据。
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引用次数: 0
期刊
Lahore Garrison University Journal of Life Sciences
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