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Antibiotic resistant bacteria in diverse ecological water samples are a threat to Human Food security 多种生态水样中的耐药菌对人类食品安全构成威胁
Pub Date : 2022-11-15 DOI: 10.54692/lgujls.2022.0604232
H. Hashmi, N. Jamil
Antibiotic resistance is increasing with every passing day globally and it has become common not only in clinical settings but also in different environments. Aquatic systems are major reservoirs of antibiotic resistance genes in the environment. In this study, we have isolated the antibiotic resistance bacteria from aquatic systems including river Ravi, fish farm and underground drinking water source. Physical, chemical and microbiological parameters were studied, bacteria were isolated, gram staining and genus identification was done by following the Burgey’s manual of systematic bacteriology. While, antibiotic susceptibility testing was done by following the disk diffusion method and CLSI guidelines. Multiple antibiotic resistant indexes were calculated. There was no significant discrepancy in physical and chemical parameters of water samples whereas in microbiological parameters, a variable number of bacteria were found in all 3 water samples indicating the presence of microbial contamination. A total of 33 bacterial strains were identified including Enterobacteriaceae, Pseudomonas, Bacillus, Lactobacillus and Staphylococcus species. Out of 10 classes of antibiotics, resistant against 8 classes were identified. Organisms isolated from river Ravi were the most resistant isolates. Most of the organisms were resistant to Penicillins, Carbapenems and Cephalosporins. MAR index of isolated strains ranges from 0.43 to 0.88. AMR is common in all environmental water samples indicating a threat to human food safety
抗生素耐药性在全球范围内日益增加,不仅在临床环境中而且在不同环境中都很常见。水生系统是环境中抗生素抗性基因的主要储存库。在本研究中,我们从拉维河、养鱼场和地下饮用水源等水生系统中分离出抗生素耐药菌。研究了物理、化学和微生物学参数,分离细菌,按照伯格氏系统细菌学手册进行革兰氏染色和属鉴定。药敏试验采用纸片扩散法和CLSI指南。计算多种抗生素耐药指标。水样理化参数差异不显著,而微生物参数差异不显著,3个水样均有不同数量的细菌,表明存在微生物污染。共鉴定出肠杆菌科、假单胞菌、芽孢杆菌、乳杆菌和葡萄球菌等33株细菌。在10类抗生素中,鉴定出对8类抗生素具有耐药性。从拉维河分离出的细菌是最具耐药性的菌株。大多数病原菌对青霉素类、碳青霉烯类和头孢菌素耐药。分离菌株的MAR指数为0.43 ~ 0.88。抗菌素耐药性在所有环境水样中都很常见,表明对人类食品安全构成威胁
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引用次数: 0
Prevalence of Intrauterine Growth Retardation on Antenatal Ultrasound Scan in Lahore, Pakistan 在巴基斯坦拉合尔产前超声扫描的宫内发育迟缓的患病率
Pub Date : 2022-11-15 DOI: 10.54692/lgujls.2022.0604234
M. A. Naeem, Humaira Rauf, Sayeda Kiran Aftab, Fatima Mahrukh, Akash John, Warda Kiran
Fetal growth retardation is described as infants whose weights are much less than expected. Population based norms are used to categorize abnormal growths. The objective of the study was to determine the frequency of intrauterine growth retardation on antenatal ultrasound scan. It was an observational descriptive study conducted at the Radiology Department of Fatima Memorial Hospital, Shadman Lahore. Patients visited the Ultrasound Department for Obstetric scan. The study was conducted in 6 months from January to June in 2022. The sample size of 87 was calculated for study with expected rate of 9% of pregnancies resulted in intrauterine growth retardation at 5% level of significance at 5% margin of error. The study included pregnant females in third trimesters of pregnancy. The data was analyzed using SPSS version 20. A total of 87 obstetric ultrasounds were performed during the study period. The mean age of the patients was 28.69 ±4.46 years with age range 20-42. The 87 included patients showed mean gestational age 35.29 ±2.50 weeks. The mean biparietal diameter was 8.69±0.57 cm and abdominal circumference was 29.72±3.03 cm. The mean fetal body weight is 2.52±0.59 kg. The frequency of intrauterine growth retardation was 10.3%. Fetal biometry, biophysical profile and Doppler studies were helpful in the diagnosis of intrauterine growth retardation and evaluation of ultrasound parameters in third trimester.
胎儿发育迟缓被描述为婴儿的体重比预期的要少得多。以人口为基础的标准用于对异常增长进行分类。本研究的目的是在产前超声扫描中确定宫内发育迟缓的频率。这是一项在拉合尔沙德曼法蒂玛纪念医院放射科进行的观察性描述性研究。患者到超声科进行产科扫描。该研究是在2022年1月至6月的6个月内进行的。该研究的样本量为87,预期妊娠率为9%,导致子宫内生长迟缓,显著性水平为5%,误差范围为5%。该研究包括妊娠晚期的怀孕女性。数据采用SPSS version 20进行分析。研究期间共进行了87次产科超声检查。患者平均年龄28.69±4.46岁,年龄20 ~ 42岁。87例患者平均胎龄为35.29±2.50周。平均双顶径为8.69±0.57 cm,腹围为29.72±3.03 cm。平均胎重2.52±0.59 kg。宫内发育迟缓发生率为10.3%。胎儿生物测量、生物物理特征和多普勒检查有助于妊娠晚期宫内发育迟缓的诊断和超声参数的评价。
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引用次数: 0
Co-resistance of Antibiotics and Heavy metals in Bacterial Strains Isolated from Agriculture Farm and Soap Industry 农业、农场和肥皂工业分离菌株抗生素与重金属的共耐药研究
Pub Date : 2022-11-15 DOI: 10.54692/lgujls.2022.0604233
Rimsha Dilshad, R. Batool
In this study, a relationship between antibiotic and heavy metal resistance was estimated among culturable bacterial strains of agriculture farm and soap industry soil.A total of 27 bacterial strains were isolated and screened for their antibiotic and heavy metal resistance by supplementing LB agar medium with variable concentrations of respectivestress. On LB-agar medium, agriculture farm soil harboured more cultivable bacterial strains (17 bacterial strains) as compared to the soap industry soil (10 bacterial strains).Minimum inhibitory concentration of antibiotics for bacterial strains ranged from 20μg/ml to 000μg/ml while MIC of heavy metals had a range of 20μg/ml-2000μg/ml for Nickel, Copper, and Mercury whereas the minimum inhibitory concentration of lead and chromium was up to 10,000μg/ml and 250,000μg/ml respectively. A high rate of co-resistance forStreptomycin with Lead and copper and Ampicillin with lead was observed in 90% of industrial soil bacterial strains. In conclusion, multiple antibiotic resistance and antibioticheavymetal co-resistance in bacteria strains could be due to contamination of soil with any sort of heavy metals or the diversity of population inhabiting that particular site. Antibiotic resistance can also be attributed to the horizontal gene transfer in bacteria.
在本研究中,估计了农业、农场和肥皂工业土壤中可培养菌株的抗生素与重金属抗性之间的关系。通过添加不同浓度的LB琼脂培养基,对27株细菌进行抗生素和重金属抗性筛选。在lb -琼脂培养基上,与肥皂工业土壤(10株)相比,农业土壤含有更多的可培养菌株(17株)。抗生素对细菌的最低抑菌浓度为20 ~ 000μg/ml,重金属对镍、铜和汞的最低抑菌浓度为20 ~ 2000μg/ml,对铅和铬的最低抑菌浓度分别为10000 μg/ml和25万μg/ml。90%的工业土壤细菌对链霉素与铅、铜、氨苄西林与铅的共耐药率较高。总之,细菌菌株的多重抗生素耐药和抗生素-重金属共耐药可能是由于土壤被任何种类的重金属污染或居住在特定地点的人口多样性。抗生素耐药性也可归因于细菌中的水平基因转移。
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引用次数: 0
Syzygium Cumini L. Seed A Potent Source of Fiber, Protein and Natural Antioxidants 一种富含纤维、蛋白质和天然抗氧化剂的种子
Pub Date : 2022-09-15 DOI: 10.54692/lgujls.2022.0603227
M. Saeed, N. Zahra, A. Saeed, Syed Hussain Imam Abidi, Q. Syed
Syzygium cumini L. seeds have been documented in traditional medicine in Pakistan. The current research was aimed to assess the physicochemical characteristics, polyphenols and antioxidants of S. cumini seed. The physical characteristics such as the color of S. cumini seed were white to pink, the shapes resembled to oblong and coarse texture. The length, width and weight of fresh S. cumini seed were found to be (18.20±0.81mm, 11.05±0.41mm and 1.80±0.16g), respectively while the color of dried S. cumini seeds were light brown to brown,rhombus in shape with loutish texture. The average length, width and weight of dried S. cumini seeds were 16.47±0.45; 10.14±0.25 mm and 0.75±0.12 g respectively. S. cumini seeds powder were evaluated for their chemical composition e.g. carbohydrate, protein, fat, crude fiber, moisture content and ash (77.27±2.50, 3.62±0.30, 6.25±0.55, 10.30±1.20 and 1.55±0.11 g/100g), respectively. Quantitative analysis of total phenolic content was performed it was found that the methanolic and water extract had 52±1.65 and 40±1.25 mg GAE/g content. Free radical scavenging activity was also evaluated to estimate the antioxidant property of extract. Among tested extracts maximum % inhibition 96.61±1.90% was found in methanol extract and 69.30±1.56% in water extract, while BHT has % inhibition 50.70±1.32% at concentration 100 μg/ml. Similarly in reducing power activity assay the maximum absorbance 1.4704±0.05 was shown by methanol extract and 1.2075±0.03 in water extract of S. cumini seed powder respectively which was compared with BHT (0.9207±0.02). Therefore, it was concluded that these Syzygium Cumini L. seeds traditional medicinal plants provide a good source of nutrients, namely protein, fiber and natural antioxidants.
在巴基斯坦的传统医学中有文献记载。本研究旨在对小茴香种子的理化特性、多酚类物质及抗氧化剂进行研究。小茴香种子的物理性状为白色至粉红色,形状似长方形,质地粗糙。新鲜种子的长(18.20±0.81mm)、宽(11.05±0.41mm)、重(1.80±0.16g),干燥种子的颜色为浅褐色至褐色,形状呈菱形,质地粗大。干籽平均长、宽、重为16.47±0.45;10.14±0.25 mm, 0.75±0.12 g。测定了芝麻籽粉的碳水化合物、蛋白质、脂肪、粗纤维、水分和灰分的化学成分(分别为77.27±2.50、3.62±0.30、6.25±0.55、10.30±1.20和1.55±0.11 g/100g)。对总酚含量进行定量分析,发现甲醇和水提取物的总酚含量分别为52±1.65和40±1.25 mg GAE/g。通过自由基清除活性的评价来评价提取物的抗氧化性能。在100 μg/ml浓度下,甲醇提取物的抑制率为96.61±1.90%,水提取物的抑制率为69.30±1.56%,BHT的抑制率为50.70±1.32%。在还原活性试验中,甲醇提取物的最大吸光度为1.4704±0.05,水提取物的最大吸光度为1.2075±0.03,BHT的最大吸光度为0.9207±0.02。综上所述,这些传统药用植物种子提供了良好的营养来源,即蛋白质、纤维和天然抗氧化剂。
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引用次数: 0
A Review on the Techniques for Early Diagnosis of Alzheimer’s Disease 阿尔茨海默病早期诊断技术综述
Pub Date : 2022-09-15 DOI: 10.54692/lgujls.2022.0603228
M. Shahzadi, Bareera Saeed, Muhammad Azzam Khan, Amna Rashid, Muhammad Bilal, Roma Imtiaz, T. Faridi
Alzheimer’s disease is a neurological condition in which there is rapid deterioration of the brain and it affects around 50 million people globally. The most obvious sign of Alzheimer’s is dementia which is primarily an affliction of old age. Majority of the people presenting with dementia in old age are Alzheimer’s patients. The symptoms of Alzheimer’s disease are debilitating and have the ability to utterly disrupt a person's normal life. It is only discovered after this terrible disease has destroyed all neurons, thus there is little chance to cure it or reverse the adverse effects. There are two types of techniques for detecting Alzheimer's disease: invasive and non-invasive techniques. Invasive method obtains data from the patient bydrawing a small amount of blood or performing a lumbar puncture, whereas noninvasive method collects data using imaging techniques like MRI and CT scan. Invasive technique, on the other hand, is thought to be a more accurate indicator of Alzheimer's disease than non-invasive technique since it provides strong biomarkers. Once Alzheimer's disease has progressed to its final stage, it is incurable. Treatment is only viable when the disease is in its initial stages. Future treatments for Alzheimer's disease will focus on the causative maladies of neurofibrillary tangles (ptau) and senile plaques (A). The pathological traits connected to debilitating disease, special protein, b proteins, are critical for future therapeutics
阿尔茨海默病是一种神经系统疾病,会导致大脑迅速退化,全球约有5000万人受到影响。阿尔茨海默氏症最明显的症状是痴呆症,这主要是老年人的痛苦。大多数老年痴呆症患者都是阿尔茨海默氏症患者。阿尔茨海默病的症状使人衰弱,并有能力完全扰乱一个人的正常生活。只有在这种可怕的疾病破坏了所有的神经元后才会发现,因此几乎没有机会治愈它或扭转不良影响。有两种检测阿尔茨海默病的技术:侵入性和非侵入性技术。有创性方法通过抽取少量血液或腰椎穿刺从患者身上获取数据,而无创性方法通过MRI和CT扫描等成像技术收集数据。另一方面,侵入性技术被认为是比非侵入性技术更准确的阿尔茨海默病指标,因为它提供了强大的生物标志物。一旦阿尔茨海默病发展到最后阶段,就无法治愈了。只有当疾病处于初期阶段时,治疗才可行。阿尔茨海默病的未来治疗将集中在神经原纤维缠结(ptau)和老年斑(A)的致病疾病上。与衰弱性疾病相关的病理特征,特殊蛋白,b蛋白,对未来的治疗至关重要
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引用次数: 0
Reduction of Chromium (VI) by indigenous bacteria isolated from industrial effluents of Pakistan 从巴基斯坦工业废水中分离的本地细菌还原铬(VI)
Pub Date : 2022-09-15 DOI: 10.54692/lgujls.2022.0603225
S. Sabri, R. Batool, M. S. Akhtar
The present study was aimed to isolate and examine the reduction potential of chromium resistant bacteria. For this purpose, 10 chromium resistant bacterial strains were isolated from three different samples, collected from effluents of industries. These isolated strains were designated as A, B1, B2, C, L1, L2, L3, M, I1, and I2. All strains were able to resist up to 3500 μg/ml of potassium chromate on Lagar. At optimum pH 7 and temperature 37 ℃, all isolated strains showed optimum reduction potential. The strain B1 and L3 showed 97% reduction potential in DE broth while B1 in L-broth and I2 in acetate minimal broth showed 98% and 97% reduction potential respectively. In the case of artificial sewage water, strain M and L2 showed 94% reduction potential. In sample-1 of domestic sewage water (sterile), B2 showed 94% while I2 (non-sterile) had maximum reduction potential. Sample-2 (A, C, L2, I1) from domestic sewage water (non-sterile) had 96% and A, C, L2, I1 (sterile) also showed a 96% maximum reduction potential.
本研究旨在分离和检测耐铬细菌的还原潜力。为此,从从工业废水中收集的三种不同样品中分离出10种耐铬菌株。这些分离的菌株被命名为A、B1、B2、C、L1、L2、L3、M、I1和I2。所有菌株在拉格尔上均能抵抗高达3500 μg/ml的铬酸钾。在pH为7、温度为37℃的条件下,所有分离菌株均表现出最佳的还原潜力。菌株B1和L3在DE肉汤中表现出97%的还原潜力,菌株B1在l -肉汤中表现出98%的还原潜力,菌株I2在乙酸最低肉汤中表现出97%的还原潜力。在人工污水的情况下,应变M和L2表现出94%的还原电位。在生活污水样品1(无菌)中,B2还原率为94%,而I2(非无菌)还原潜力最大。来自生活污水(非无菌)的样品-2 (A, C, L2, I1)有96%的最大还原潜力,A, C, L2, I1(无菌)也显示出96%的最大还原潜力。
{"title":"Reduction of Chromium (VI) by indigenous bacteria isolated from industrial effluents of Pakistan","authors":"S. Sabri, R. Batool, M. S. Akhtar","doi":"10.54692/lgujls.2022.0603225","DOIUrl":"https://doi.org/10.54692/lgujls.2022.0603225","url":null,"abstract":"The present study was aimed to isolate and examine the reduction potential of chromium resistant bacteria. For this purpose, 10 chromium resistant bacterial strains were isolated from three different samples, collected from effluents of industries. These isolated strains were designated as A, B1, B2, C, L1, L2, L3, M, I1, and I2. All strains were able to resist up to 3500 μg/ml of potassium chromate on Lagar. At optimum pH 7 and temperature 37 ℃, all isolated strains showed optimum reduction potential. The strain B1 and L3 showed 97% reduction potential in DE broth while B1 in L-broth and I2 in acetate minimal broth showed 98% and 97% reduction potential respectively. In the case of artificial sewage water, strain M and L2 showed 94% reduction potential. In sample-1 of domestic sewage water (sterile), B2 showed 94% while I2 (non-sterile) had maximum reduction potential. Sample-2 (A, C, L2, I1) from domestic sewage water (non-sterile) had 96% and A, C, L2, I1 (sterile) also showed a 96% maximum reduction potential.","PeriodicalId":148827,"journal":{"name":"Lahore Garrison University Journal of Life Sciences","volume":"6 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121299215","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhanced remediation of diesel contaminated soil by the combined use of Lolium perenne and bacterial consortium 黑麦草与细菌联合利用对柴油污染土壤的修复效果研究
Pub Date : 2022-09-15 DOI: 10.54692/lgujls.2022.0603226
Muhammad Irtaza Nazeer, K. Fatima, H. Mohsin, M. Afzal, M. Zaid
Rhizoremediation is a cost effective and aesthetically pleasing technology for the remediation of diesel polluted environment. The influence of diesel fuel contamination on Lolium perenne with bacterial consortium (Microbacterium schleiferi and Bacillus subtilis) on plant growth and hydrocarbon degradation was investigated. In this study, three different bacterial strains were grown at varying diesel oil concentration i.e. 0.5%, 1%, 1.5%, 2% and 2.5%. Bacteria were also screened for biosurfactant, indole 3-acetic acid production, phosphate solubilization, and antifungal bioassay. Microbacterium schleiferi and Bacillus subtilis were able to grow at 2% diesel oil concentration and exhibited plant growth promoting activities. Green house analysis revealed that augmentation with biosurfactant producing and plant growth promoting bacteria enhanced the plant growth and diesel oil degradation (80%) as compared to the treatments in which bacteria and plants were separately used. Therefore, the study concludes that application of selected strains with the Lolium perenne is a better approach for successful remediation of diesel oil contaminated soil.
根茎修复技术是一种经济、美观的柴油污染环境修复技术。研究了柴油污染对施莱氏微杆菌和枯草芽孢杆菌联合菌群对黑麦草生长和烃降解的影响。本研究分别在0.5%、1%、1.5%、2%和2.5%的柴油浓度下培养三种不同的细菌菌株。对细菌进行了生物表面活性剂、吲哚3-乙酸生成、磷酸盐增溶和抗真菌生物测定等方面的筛选。施莱氏微杆菌和枯草芽孢杆菌在2%柴油浓度下均能生长,并表现出促进植物生长的活性。温室分析表明,与细菌和植物单独使用相比,增加生物表面活性剂生产菌和植物生长促进菌对植物生长和柴油降解的促进作用(80%)。因此,本研究认为,选择菌株与黑麦草一起施用是成功修复柴油污染土壤的较好途径。
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引用次数: 0
Prevalence of Congenital Cataract and Lens Extraction in Lahore Population 拉合尔地区先天性白内障及晶状体摘出的患病率
Pub Date : 2022-09-15 DOI: 10.54692/lgujls.2022.0603224
S. Naz, Nimrah Fiaz Sandhu, Eesha Sajjad, S. Sharif, Iram Arshad
Congenital cataracts account for one-third of infant blindness globally and are one of the leading cause of vision loss in children. A retrospective study was performed between October 2020 and April 2021 on congenital cataract patients of Lahore visited ophthalmologic consultation at the Al Ehsaan eye hospital, General Hospital and Mayo hospital. The purpose of the study was to find the prevalence of congenital cataract in children. About 100 cases of congenital cataract including both male and female children were identified from age group of 1-13years. Congenital cataract was diagnosed using Snellen’s visual acuity test, ophthalmoscope and slit lamp test. Male children showed greater prevalence of congenital cataract as compared to female children. The prevalence of congenital cataract in male children was 55% (n=55) while among female children, it was 45% (n=45). Both conditions of unilateral and bilateral congenital cataract were observed with incidence of 46% (n=46) and 54% (n=54) in male and female children respectively. Lens extraction was also done in 94% (n=94) and after surgery 55% (n=52) patients showed positive response and 45% (n=42) patient had negative response for light perception. Moreover, most patients of congenital cataracts were of less than 1 year of age group. It was concluded congenital cataract may lead to childhood blindness if not treated on time.
先天性白内障占全球婴幼儿失明的三分之一,是儿童视力丧失的主要原因之一。2020年10月至2021年4月期间,对在Al Ehsaan眼科医院、综合医院和梅奥医院就诊的拉合尔先天性白内障患者进行了回顾性研究。本研究的目的是了解儿童先天性白内障的患病率。本文报道1 ~ 13岁儿童先天性白内障100例,男女均有。采用斯连氏视力检查、检眼镜及裂隙灯检查诊断先天性白内障。男性儿童先天性白内障患病率高于女性儿童。先天性白内障的患病率男性为55% (n=55),女性为45% (n=45)。单侧先天性白内障和双侧先天性白内障,男女患儿发生率分别为46% (n=46)和54% (n=54)。94% (n=94)的患者进行了晶状体摘除,术后55% (n=52)的患者对光感知有积极反应,45% (n=42)的患者对光感知有消极反应。先天性白内障患者以1岁以下年龄组居多。结论:先天性白内障如不及时治疗,可能导致儿童失明。
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引用次数: 0
Molecular analysis through Phylogenetic tree construction using COX 1 gene sequence of Birds of Lake View Park Islamabad 利用伊斯兰堡湖景公园鸟类COX 1基因序列构建系统发育树的分子分析
Pub Date : 2022-09-15 DOI: 10.54692/lgujls.2022.0603219
Faizan Naeem, Aftab Ahmad, Javeria Amir, M. Razi, F. Ahsan
The collection of birds serves as a repository for research and also as a means of documenting avian diversity and its spread. Evolutionary divergence is the sophisticated explanation of similarities and differences among different species of birds. Lineage represents how these different species have evolved can be study. Phylogenetic analysis is generally used to understand how traits among these bird species have evolved. Phylogeny can help in identifying birds based on both morphological and genetic characteristics. In this article, a total number of birds inhabiting Lake view Park Islamabad have been identified and a phylogenetic tree is constructed based on their COX 1 gene sequence. Sequences of the respective species gene are downloaded from NCBI databases using MEGA-X software. The phylogenetic tree represented birds arranged in five different clades from a single emergence of new species and spread of biodiversity of Class Aves organisms from the single ancestor. origin. Four external nodes and one internal node can be seen which showed the
鸟类的收藏是研究的宝库,也是记录鸟类多样性及其传播的手段。进化分歧是对不同种类鸟类之间相似性和差异性的复杂解释。谱系代表了这些不同物种是如何进化的,可以被研究。系统发育分析通常用于了解这些鸟类物种之间的特征是如何进化的。系统发育学可以在形态学和遗传特征的基础上帮助识别鸟类。本文对伊斯兰堡湖景公园的鸟类进行了鉴定,并根据其COX 1基因序列构建了系统发育树。使用MEGA-X软件从NCBI数据库下载各物种基因序列。系统发育树代表了鸟类从单一的新物种出现到五个不同的分支,以及鸟类类生物从单一祖先开始的生物多样性的传播。来源。可见4个外部节点和1个内部节点
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引用次数: 0
Molecular identification of museum preserved type specimens of fish species using DNA barcoding 利用DNA条形码技术对博物馆保存鱼类标本进行分子鉴定
Pub Date : 2022-09-15 DOI: 10.54692/lgujls.2022.0603223
N. Malkani, S. Khalid, Sania Ashraf, M. Kamran, Rizwan Ullah Khan, A. Yaqub, Azizullah
Type specimens of organisms provide the basis for the identification of species. Proper phenotypic data supported by genetic evidence is crucial for every type of specimen keeping in view its significance. Several methods of species identification both morphological and genetic are being used. DNA barcoding using a fragment of cytochrome c oxidase subunit I (COI) mitochondrial gene is gaining popularity because of its accuracy and efficiency. In this study, six type specimens of endemic fishes from Pakistan preserved at Stephenson Natural History Museum, GC University, Lahore, Pakistan were analyzed for their genetic diversity from other members of the genus. COI barcode sequences of Clupisoma naziri, Barilius vagra pakistanicus, Nemacheilus naziri, Nemacheilus griffithi hazarensis, Schizothorax skarduensis, and Naziritor zhobensis were obtained and analyzed. The obtained sequences were approximately 655bp long. The average Kimura-twoparameter( K2P) distances from other members of genera were 0.608%, 0.44%, 0.42%, 0.608%, 0.945%, and 1.364% for Clupisoma naziri, Barilius vagra pakistanicus, Nemacheilus naziri, Nemacheilus griffithi hazarensis, Schizothorax skarduensis, and Naziritor zhobensis respectively. The nodes in K2P distance-basedNJ (neighbor-joining) trees were supported by high bootstrap values (100%) in all the species. We conclude that COI sequencing provides an effective way of species identification and barcode generation for fish specimens.
生物的模式标本为物种的鉴定提供了依据。适当的表型数据支持的遗传证据是至关重要的每一个类型的标本保存鉴于其重要性。形态学和遗传学的几种物种鉴定方法正在被使用。利用细胞色素c氧化酶亚基I (COI)线粒体基因片段进行DNA条形码技术由于其准确性和效率而越来越受到人们的欢迎。本研究对保存在巴基斯坦拉合尔市GC大学Stephenson自然历史博物馆的6种巴基斯坦特有鱼类的类型标本进行了遗传多样性分析。获得了naziri Clupisoma、Barilius vagra pakanicus、Nemacheilus naziri、Nemacheilus griffithi hazarensis、Schizothorax skarduensis和Naziritor zobensis的COI条形码序列并进行了分析。得到的序列长度约为655bp。与其他属成员的平均K2P距离分别为0.608%、0.44%、0.42%、0.608%、0.945%和1.364%,分别为:naziri Clupisoma naziri、Barilius vagra巴基斯坦、Nemacheilus naziri、Nemacheilus griffithi hazarensis、Schizothorax skarduensis和Naziritor zobensis。基于K2P距离的nj(邻居连接)树的节点在所有物种中都有很高的自举值(100%)支持。我们认为COI测序为鱼类标本的物种鉴定和条形码生成提供了一种有效的方法。
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引用次数: 1
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Lahore Garrison University Journal of Life Sciences
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