Global food security is increasingly threatened by rising population growth and post-harvest losses due to insect infestations. As a natural defense strategy, plants produce amylase and protease inhibitors that disrupt the digestive enzymes of pests, thereby impairing their ability to survive. In this study, we isolated and identified an Amylase Trypsin Inhibitor (ATI) from wheat seeds of genotype HD 3086 using gel filtration chromatography (Sephadex G-50) and LC-MS/MS. Proteomic analysis revealed five ATI isoforms: Alpha-amylase inhibitor 0.28, Alpha-amylase/trypsin inhibitor CM16, Alpha-amylase inhibitor 0.19 and 0.53, Trypsin/α-amylase inhibitors CMX2, and CMX1/CMX3 and Subtilisin–chymotrypsin inhibitor WSCI with molecular weights ranging from 9 to 17 kDa. The purified inhibitor showed strong α-amylase (90.6 ± 0.72 %) and moderate trypsin (62.9 ± 0.8 %) inhibition, with a specific activity of 0.18 ± 0.02 U/mg. In silico analysis revealed the physicochemical properties and multiple sequence alignment highlighted the conserved motif of the identified ATI proteins. A beta sheet rich in 230 nm and a low α-helical structure, with minima at 208 and 222 nm, was determined using circular dichroism (CD) spectroscopy. UV-Near Infrared (UV-NIR) spectroscopy further distinguished healthy and infested grains of wheat variety HD-3086, showing decreased reflectance and increased absorbance in infested samples, particularly near 970, 1450 and 1940 nm, consistent with moisture and protein degradation reported in prior studies. These results confirmed the bioactivity and structural integrity of ATI from HD 3086, providing insights into their potential use as a natural defense system and supporting their relevance in pest-resistant wheat improvement and quality assessment.
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