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IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2025-02-11 DOI: 10.1111/jbi.14888

On the cover: The European adder (Viper berus) is a polymorphic species with a vast distribution, occurring from western Europe to the Russian far East. Photo credit: Niels Jansen.

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引用次数: 0
Cover
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2025-01-13 DOI: 10.1111/jbi.14879

On the cover: Euglossa imperialis is one of the most common species of orchid bees (Tribe Euglossini) in Panama. This individual was collected in Coiba National Park, a marine - terrestrial protected area found in the Pacific side of Panama. Photo credit: Yosiat Vega-Rovira.

封面:帝王蜂(Euglossa imperialis)是巴拿马最常见的兰花蜂(Euglossini 族)物种之一。这只个体是在巴拿马太平洋一侧的海洋-陆地保护区科伊巴国家公园采集到的。图片来源:Yosiat Vega-Rovira。
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引用次数: 0
The Contemporary Distribution of Scincine Lizards Does Not Reflect Their Biogeographic Origin
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-12-16 DOI: 10.1111/jbi.15061
Aniruddha Datta-Roy, Matthew C. Brandley, Christopher C. Austin, Aaron M. Bauer, David James Harris, Salvador Carranza, Kanishka D. B. Ukuwela, Anslem De Silva, Krystal A. Tolley, K. Praveen Karanth, Maitreya Sil
<div> <section> <h3> Aim</h3> <p>We assess the systematic relationships and historical biogeographic patterns in the subfamily Scincinae, a group of lizards that primarily inhabits the Afro-Madagascan and Saharo-Arabian regions with isolated lineages in Europe, North America, East Asia, India and Sri Lanka. The contemporary distribution of these lineages on the historical Laurasian and Gondwanan landmasses make scincines an ideal system to study the roles of vicariance and dispersal on a geologic scale of tens of millions of years.</p> </section> <section> <h3> Location</h3> <p>Global.</p> </section> <section> <h3> Taxon</h3> <p>Subfamily Scincinae (Family Scincidae).</p> </section> <section> <h3> Methods</h3> <p>We conducted biogeographic analyses on a reconstructed, time-calibrated species tree of scincine genera, including members of the other Scincidae subfamilies, using seven nuclear loci (~6 k base pairs). We also constructed a lineage-through-time plot to assess the timing of diversification within scincines.</p> </section> <section> <h3> Results</h3> <p>Our analysis estimated strong support for the monophyly of Scincinae that is further comprised a strongly-supported Gondwanan clade nested within a broader Laurasian group. While most of the extant, genus-level diversity within the Gondwanan clade was accrued post-Eocene, the majority of the Laurasian lineages diverged during the Palaeocene or earlier, suggesting large-scale extinctions on continents of Laurasian origin. Counterintuitively, scincines from India and Sri Lanka have distinct biogeographical origins despite a long tectonic association between these landmasses, suggesting at least two independent, long-distance, trans-oceanic dispersal events into the subcontinent. Our biogeographic analyses suggest that scincines likely originated in East and Southeast Asia during the late Cretaceous (<i>ca</i>. 70 Ma), and eventually dispersed westwards to Africa and Madagascar, where their greatest current-day species richness occurs.</p> </section> <section> <h3> Main Conclusions</h3> <p>Our study demonstrates the concomitant roles of dispersal and extinction in shaping modern-day assemblages of ancient clades such as scincine lizards. Our range evolution analysis shows that despite the greater diversity observed in the Afro-Madagascan region, the origin of scincines can be traced back to Sou
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引用次数: 0
Incorporating Climatic Extremes Using the GEV Distribution Improves SDM Range Edge Performance
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-12-16 DOI: 10.1111/jbi.15067
Ward Fonteyn, Josep M. Serra-Diaz, Bart Muys, Koenraad Van Meerbeek

Aim

The changing frequency and intensity of climatic extremes due to climate change can have sudden and adverse impacts on the distribution of species. While species distribution modelling is a vital tool in ecological applications, current approaches fail to fully capture the distribution of climatic extremes, particularly of rare events with the most disruptive potential. Especially at the edges of species' ranges, where conditions are already less favourable, predictions might be inaccurate when these extremes are not well represented.

Location

Europe.

Taxon

Tree species.

Methods

We present a novel approach to integrate extreme events into species distribution models based on the generalised extreme value (GEV) distribution. This distribution, following from the extreme value theory has been established as a valuable tool in analysing climatic extremes, both in an ecological context and beyond. The approach relying on the GEV distribution is broadly applicable, readily transferable across species and relies on widely available data. We demonstrate the efficacy of our approach for 28 European tree species, illustrating its superior ability to fully capture the distribution of climatic extremes compared to state-of-the-art methods.

Results

We found that incorporating parameters on climatic extremes derived from the GEV distribution increased model performance (AICmodel) and characterised range edges more accurately (AUCedge) compared to competing approaches. However, general AUC values were only marginally increased across the species and study period analysed. Overall, the GEV model predicted a narrower niche for the species included in this study.

Main Conclusions

Incorporating climatic extremes can impact spatial predictions of species distribution models, especially at range margins. We found that using the GEV distribution to characterise extreme variables in SDMs yields the best performance at these distribution edges. Given the importance of range edges for species conservation, a detailed inclusion of extremes in SDMs employed for those applications will help ensure robust conclusions.

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引用次数: 0
Paleoclimate Fluctuations Facilitate the Biogeographical History of Endemic Species of Freshwater Crabs in China via Cycles of Introgressive Hybridisation and Habitat Isolation
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-12-14 DOI: 10.1111/jbi.15071
Boyang Shi, Ruxiao Wang, Danhong Song, Juanjuan Xu, Lin Zhu, Yufang Sun, Rui Hu, Neil Cumberlidge, Da Pan, Hongying Sun
<div> <section> <h3> Aim</h3> <p>The impact of Pleistocene climate fluctuations on the biogeographical history of aquatic species has been a topic of enduring debate. This issue poses particular challenges for parapatric closely related species, especially those situated in transition zones where species assemblages occur between distinct zoogeographic boundaries.</p> </section> <section> <h3> Location</h3> <p>Eastern China.</p> </section> <section> <h3> Taxon</h3> <p>Five closely related <i>Sinopotamon</i> species and subspecies, <i>S. shensiense</i>, <i>S. honanense</i>, <i>S. y. yangtsekiense</i>, <i>S. y. shanxianense</i>, and <i>S. y. tongbaiense</i>.</p> </section> <section> <h3> Methods</h3> <p>These parapatric <i>Sinopotamon</i> species and subspecies, distributed along the boundary between the Palaearctic and Oriental realms in eastern China, offer an ideal model for addressing these challenges. We explored the biogeographic history of these species by conducting a comparative phylogeographic analysis using nine microsatellite loci and two mitochondrial DNA sequences, combined with morphological variation and fine-tuned ecological niche modelling.</p> </section> <section> <h3> Results</h3> <p>Our phylogeographic analyses consistently revealed two well-supported clades: clade A, for <i>S. y. yangtsekiense</i>, and clade B, which includes other species showing polyphyletic patterning and significant gene introgression. The Nanyang Basin and surrounding mountains regions (NBSM) was identified as a critical shared refuge and hybrid zone, facilitating interspecific introgression through at least two putative hybridisation events. During the Late Pleistocene glacial cycles, introgressive hybridisation of these species occurred in the NBSM, followed by rapid expansion and colonisation of heterogenous habitats during interglacial cycles, with dispersal corridors largely aligning with the local river system. In particular, the diffusion corridor of <i>S. honanense</i> significantly disrupted the continuous distribution of <i>S. y. shanxianense</i> and <i>S. y. tongbaiense</i>, indicating that <i>S. honanense</i> has replaced <i>S. y. shanxianense</i> and <i>S. y. tongbaiense</i> in the NYSM and caused a disruption in its distribution.</p> </section> <section> <h3> Main Conclusions</h3> <p>The biogeographic histories of the species in clade B are consistent with a mixing–isolation–mixing model, which suggests that populations experienced repeated introgressive hybridisatio
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引用次数: 0
Community Analysis Reveals Biogeographical Patterns and Biodiversity Shortfalls in Antarctic Tardigrades
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-12-13 DOI: 10.1111/jbi.15063
Matteo Vecchi, Sara Brandoli, Vladlen Mykolayovych Trokhymets

Aim

Tardigrades are important members of Antarctic metazoan communities with many endemic species. Major biogeographic patterns of Antarctic fauna have been identified, in particular regarding the zonation across the Gressitt line, dividing Continental and Peninsular Antarctica. Evidences suggest that Antarctic tardigrades follow this zonation too, but this has never been rigorously tested.

Location

Limnoterrestrial ecosystems of Antarctica.

Time Period

1950 to Present.

Major Taxa Studied

Tardigrades.

Methods

Records of tardigrades from Antarctica were collected and their taxonomy and coordinates harmonised. Alpha and Beta diversity measures were calculated and compared across different Antarctica biogeographic areas, in particular across the Gressitt line. Analyses were repeated at different spatial scales to ensure their robustness.

Results

Tardigrades communities are different both in terms of alpha and beta diversity across the Gressitt line. Results were consistent across the analyses at different spatial scales. Taxa richness was higher in the Antarctic Peninsula compared to the Continental Antarctica. Sampling effort had a substantial effect on the measured richness. Despite having a significant effect, Gressitt line side and biogeographic areas explained a low amount of variance.

Main Conclusions

The presence of a different Tardigrade communities composition across the Gressitt line is supported, and a geographical structure is present also at smaller scales. This geographic structuring suggests local endemisms and calls for attention to eventual effects of climate change on tardigrades communities. Faunistic data on Antarctica is still far from being exhaustive and Linnean and Wallacean biodiversity shortfalls are the two most immediate issues to be solved to have a more reliable estimation of the true Antarctic tardigrades biodiversity.

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引用次数: 0
Phylogeny of Arbacia Gray, 1835 (Echinoidea) Reveals Diversification Patterns in the Atlantic and Pacific Oceans
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-12-12 DOI: 10.1111/jbi.15070
E. Courville, N. Mongiardino Koch, Q. Jossart, C. Moreau, R. Mooi, H. A. Lessios, A. Diaz, A. Martinez Salinas, T. Saucède, E. Poulin

Aim

The aim of the current study is to conduct a comprehensive phylogenetic analysis of the genus Arbacia to elucidate the evolution and phylogenetic relationships among all extant species and reevaluate the presence of geographic structure within species that have wide, fragmented distributions.

Location

Specimens of Arbacia were collected from 34 localities spanning the Atlantic and Pacific Oceans, and the Mediterranean Sea.

Methods

We obtained sequences from three mitochondrial markers (COI, 16S and the control region and adjacent tRNAs) and two nuclear markers (28S and 18S; the latter ultimately excluded from the final analyses). Phylogenetic trees were constructed using maximum likelihood and Bayesian inference approaches. A time-calibrated phylogenetic tree was inferred using a relaxed Bayesian molecular clock and three fossil calibration points.

Results

Our analysis supports the monophyly of the genus Arbacia, including the species Arbacia nigra (previously assigned to the monotypic genus Tetrapygus). The new phylogenetic topology suggests an alternative biogeographic scenario of initial divergence between Atlantic and Pacific subclades occurring approximately 9 million years ago. The dispersal and subsequent diversification of the Pacific subclade to the southeast Pacific coincides with the onset of glacial and interglacial cycles in Patagonia. In the Atlantic subclade, the split between A. punctulata and A. lixula occurred 3.01–6.30 (median 3.74 million years ago), possibly associated with the strengthening of the Gulf Stream current connecting the western and eastern Atlantic. Our study also reveals significant genetic and phylogeographic structures within both Atlantic species, indicating ongoing differentiation processes between populations.

Main Conclusion

Our study provides valuable insights into the evolutionary history and biogeography of the genus Arbacia and highlights the complex interplay between historical climate changes and oceanic currents in shaping the distribution and diversification of echinoids in the Atlantic and Pacific Oceans.

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引用次数: 0
Cover 封面
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-12-12 DOI: 10.1111/jbi.14872

On the cover: Andryala laevitomentosa (Asteraceae) reproduces almost exclusively by vegetative reproduction and its clones are among the oldest living individuals on Earth. Mt. Pietrosul Brostenilor, Eastern Carpathians Mountains, Romania, July 2015. Photo credit: Peter Turis.

在封面上:Andryala laevitomentosa(菊科)几乎完全靠营养繁殖,它的克隆是地球上最古老的个体之一。2015年7月,罗马尼亚喀尔巴阡山脉东部的彼得罗苏尔·布罗斯特尼洛山。图片来源:Peter Turis。
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引用次数: 0
Peri-Carpathian Forest-Steppe Grasslands: Distribution, Indicator Species and Extreme Species Richness
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-12-10 DOI: 10.1111/jbi.15069
Jan Roleček, Pavel Dřevojan, Petra Hájková, Wolfgang Willner, Monika Janišová, Attila Lengyel, Illya Chorney, Anna Kuzemko, Irina Goia, Kiril Vassilev, Michal Hájek
<div> <section> <h3> Aim</h3> <p>We aim to refine the definition of peri-Carpathian forest-steppe grasslands, provide an updated distribution map, identify consensus indicator species and summarise data on their extreme species richness.</p> </section> <section> <h3> Location</h3> <p>East-Central Europe (Czech Republic, Austria, Slovakia, Hungary, Romania, Ukraine).</p> </section> <section> <h3> Taxon</h3> <p>Vascular plants.</p> </section> <section> <h3> Methods</h3> <p>A total of 127 vegetation plots from large vegetation databases and field sampling were classified as the <i>Brachypodio</i>-<i>Molinietum</i> association based on two criteria: (1) the existing formal definition and (2) a threshold of consensus indicator species derived from a literature review. The plots were mapped, and their basic habitat conditions were characterised. Habitat affiliations of consensus indicator species were expressed using the diagnostic species lists in the EuroVegChecklist. Maximum species richness values were extracted from the plot data and summarised.</p> </section> <section> <h3> Results</h3> <p>Peri-Carpathian forest-steppe grasslands of the <i>Brachypodio</i>-<i>Molinietum</i> association have been recorded across a large area of East-Central Europe, particularly in the lower to middle altitudes of the Western and Eastern Carpathians and their foothills and adjacent regions. These grasslands typically occur in moderately warm, relatively precipitation-rich regions with deep soils, primarily on plateaus and gentle slopes of up to 10°, developed predominantly over less consolidated Mesozoic and Tertiary sedimentary rocks. We identified 60 consensus indicator species, mostly species of forest-steppe habitats, with species of mesic grasslands also well represented. The current maxima of vascular plant species richness exceed 110 species per 10–16 m<sup>2</sup>. These maxima have been recorded in three regions: the Prut-Siret Interfluve in western Ukraine, the NW Transylvanian Basin in Romania and the White Carpathian Mts in the Czech Republic.</p> </section> <section> <h3> Main Conclusions</h3> <p>The extremely species-rich peri-Carpathian forest-steppe grasslands are confined to a geographically well-defined area of East-Central Europe. The observed fine-scale species richness of vascular plants is currently the highest known in the world. In addition to
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引用次数: 0
Invisible Hand of Sampling for Management: Underlying Needs to Survey a Threatened Seabird Can Bias Aggregated Data
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-12-09 DOI: 10.1111/jbi.15068
Ryan Baumbusch, Adam Duarte, James T. Peterson

Aim

Surveying for a species of concern ahead of proposed activities that alter its habitat is routine practice in conservation and management. Such surveys may accumulate large datasets that could further elucidate trends in abundance and distribution. However, the as-needed surveying of proposed activities may impart a sample site selection bias on the data if used for another purpose. Management of a threatened, forest-nesting seabird offered an example of this. Here we assessed how resource management planning and survey requirements can bias clearance monitoring survey data collected prior to proposed timber harvests, if those data are used for other purposes.

Location

Oregon and Washington, USA.

Taxon

Marbled Murrelet (Brachyramphus marmoratus).

Methods

To assess how timber planning and other factors influenced marbled murrelet survey location selection, we used logistic regression models to examine habitat associations of marbled murrelet survey sites (n = 9178) encompassing proposed timber harvests, and the survey stations (n = 38,923) therein, across the murrelet's inland range in Washington and Oregon, USA between 1989 and 2021. We then simulated the effect this selective sampling might have on assessments of occupancy trends.

Results

Most habitat characteristics considered did influence where surveys were located, with distance to roads often being the strongest predictor of survey location. The strength of selection for each covariate changed over time, such that a habitat characteristic strongly influenced location selection in a year but was less influential in another year. The simulation analysis suggested that the non-random selection of survey sites could profoundly bias assessments of occupancy trends.

Conclusions

When using these clearance monitoring survey data– or any data–beyond their original purpose, careful consideration should be given to the scope of inference provided and analytical methods used, to ensure that observed trends are the product of biological processes and not biased by sampling artefacts.

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引用次数: 0
期刊
Journal of Biogeography
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