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PCR detection and PFGE genotype analyses of streptococcal clinical isolates from tilapia in Guangxi 广西罗非鱼链球菌临床分离株PCR检测及PFGE基因型分析
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38506
Liping Li, Rui Wang, Ting Huang, Weiyi Huang, W. Liang, Jian Li, Y. Huang, A. Lei, X. Gan, Ming Chen
To acquire the data upon the clinical dominant strains of tilapia Streptococcus spp.and their genotype variations in Guangxi province,a total of 77 clinical Streptococcus spp.strains collected from the epidemic areas of Guangxi from 2006 to 2012 were identified by species-specific PCR.Among them,37 strains collected from 2006 to 2011 were genotyped by the pulse field gel electrophoresis(PFGE)method.As a result,57 out of 77 strains were identified as Streptococcus agalactiae,and the rest were determined as S.iniae by PCR identification process.As is shown,the dominant strains from 2006 to 2007 were S.iniae,accounted for 94.7%(18/19),only 5.3%(1/19)was S.agalactiae strains.Between 2009 and 2012,the dominant strains,however,became S.agalactiae,which accounted for 96.6%(56/58),only 3.4%(2/58)was referred as S.iniae strains.The strains were divided into two branches by PFGE genotyping.20 S.iniae strains were in one classification with 4 PFGE genotypes,the similarities of which were 83.9%-100%.17 S.agalactiae strains were put in another branch with 5 PFGE genotypes,the similarities of which were between 47.4% and 100%.Our data confirmed that the prevalent strains of tilapia Streptococcus spp.in Guangxi province have been shifting from S.iniae(before 2008)to S.agalactiae(2009-2012),and the PFGE genetic diversities were demonstrated in the prevalent strains.
为了解广西罗非鱼链球菌临床优势菌株及其基因型变异,对2006 - 2012年广西疫区采集的77株罗非鱼链球菌临床优势菌株进行了种特异性PCR鉴定。采用脉冲场凝胶电泳(PFGE)方法对2006 - 2011年采集的37株病原菌进行基因分型。结果77株菌株中57株经PCR鉴定为无乳链球菌,其余菌株为猪链球菌。结果表明,2006 - 2007年的优势菌株为牛链球菌,占94.7%(18/19),无乳链球菌占5.3%(1/19)。2009 - 2012年以无乳链球菌(S.agalactiae)为优势菌株,占96.6%(56/58),仅占3.4%(2/58)。通过PFGE基因分型将菌株分为两个分支S.iniae菌株具有4种PFGE基因型,相似度为83.9% ~ 100%无乳链球菌分5个基因型,相似度在47.4% ~ 100%之间。结果表明,广西罗非鱼链球菌流行菌株已由2008年以前的iniae菌株向2009-2012年的无乳链球菌菌株转变,流行菌株呈现出PFGE遗传多样性。
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引用次数: 4
Applications of aquatic animal behavior in aquaculture 水生动物行为在水产养殖中的应用
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38695
D. Zhang
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引用次数: 3
The full length cDNA cloning and expression analysis of RXR from the Chinese mitten crab(Eriocheir sinensis) 中华绒螯蟹RXR基因全长cDNA克隆及表达分析
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38754
Yao Wang, Zhigang Yang, Zi-hao Guo, Qinqin Yao, Qitao Zeng, Xiaozhen Yang, Yongxu Cheng
Retinoid X receptor( RXR) is a member of the second subfamily of nuclear receptor superfamily. In the insect and the crustacean,RXR is an important signaling protein w ith varied roles in regulating aspects of reproductive maturation,molting and embryo development. In this study,w e cloned RXR gene from Eriocheir sinensis using reverse transcriptase polymerase chain reaction( RT-PCR) and rapid-amplification of cDNA ends( RACE),and primers w ere designed according to the conserved sequence of RXR from G ecarcinus lateralis. The full-length cDNA sequence of RXR is 1 517 bp and codes a protein of about 433 amino acids. The amino acid sequence comparison results show ed that the RXR gene of Eriocheir sinensis shared 96% identity w ith G ecarcinus lateralis,using BLASTn and BLASTx softw are. Phylogenetic tree of RXR gene generated by Neighbor Joining method suggested that RXR is clustered closely w ith that of G ecarcinus lateralis. The expression of the gene in different tissues and molting stages of E. sinensis w as analyzed by real-time fluorescent quantitative PCR. The result show ed the RXR mRNA w as expressed in all tissues examined and highly in Y-organ,w ith small amount in hepatopancreas,gill and muscle,trace in heart, stomach,intestine,thoracic ganglion and brain ganglion. RXR mRNA w as detected w ith high volume in Yorgan compared to hepatopancreas,muscles and gill at the same molting stages of the crab. RXR mRNA of Y-organ in stage D w as significantly( P 0. 05) higher than that of stage AB and stage C. It also had significant difference( P 0. 05) betw een muscles at stage AB and stage E,and there w as no significant difference expression in hepatopancreas and gill tissues in different molting stages.
类视黄醇X受体(Retinoid X receptor, RXR)是核受体超家族第二亚家族的成员。在昆虫和甲壳类动物中,RXR是一种重要的信号蛋白,在调节生殖成熟、蜕皮和胚胎发育等方面发挥着多种作用。本研究采用逆转录聚合酶链反应(RT-PCR)和cDNA末端快速扩增技术(RACE)克隆了中华绒螯蟹RXR基因,并根据其保守序列设计引物。RXR全长cDNA序列为1 517 bp,编码约433个氨基酸的蛋白。利用BLASTn和BLASTx软件对中华绒螯蟹RXR基因的氨基酸序列进行比较,结果表明,该基因与侧棘蟹的同源性为96%。邻接法生成的RXR基因系统发育树显示,RXR基因与G . ecarcinus lateralis紧密聚类。采用实时荧光定量PCR技术对该基因在中华绒螯虾不同组织和蜕皮阶段的表达进行了分析。结果表明,RXR mRNA在各组织中均有表达,y脏器中表达量较高,肝胰脏、鳃和肌肉中表达量较少,心、胃、肠、胸神经节和脑节中均有表达。与蟹同一蜕皮期的肝胰腺、肌肉和鳃相比,Yorgan中检测到的RXR mRNA含量较高。y器官RXR mRNA在dw期显著升高(P < 0.05)。P < 0.05)高于AB期和c期,差异有统计学意义(P < 0.05)。在AB期和E期肌肉中表达量差异不显著,在不同蜕皮期肝胰腺和鳃组织中表达量差异不显著。
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引用次数: 5
Study on inhibitory effect of lipopeptides from Bacillus Natto on Fusarium isolated from shrimp culture environment producing T-2 toxin 纳豆芽孢杆菌脂肽对产T-2毒素虾源镰刀菌抑制作用的研究
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38297
Huanming Liu, Yaling Wang, Lijun Sun, Defeng Xu, Qi Shi, Jianmeng Liao, Jian-rong Li
In order to control Fusarium isolated from shrimp culture environment producing T-2 toxin,the inhibitory effect and antibacterial mechanism of lipopeptides from Bacillus natto on Fusarium was studied in the article.The inhibitory effect was studied through the influence of lipopeptides on the germination and growth of Fusarium spores;and the observation of the ultrastructure of the spores,the mycelium morphology and the mycelium permeability was performed through electron microscope,ordinary microscope and fluorescence microscope respectively to study the antibacterial mechanism.When the concentration of lipopeptides was 1 mg/mL,the inhibition rate on the germination of Fusarium spores reached 78.8%,and the cultivation biomass of Fusarium was 24.5% of the control group without lipopeptides on the third day.Under the condition of the same concentration,the microscopic observation under scanning electron microscope revealed that the spores of Fusarium presented moniliform state under the influence of lipopeptides;ordinary microscope revealed that the mycelia became nonseptate after the treatment of lipopeptides;and fluorescence microscope revealed that lipopeptides could increase the membrane permeability of the Fusarium mycelium.
为了控制从对虾培养环境中分离出的镰刀菌产生T-2毒素,本文研究了纳豆芽孢杆菌脂肽对镰刀菌的抑制作用及其抑菌机制。通过脂肽对镰刀菌孢子萌发和生长的影响来研究其抑菌效果,并分别通过电镜、普通显微镜和荧光显微镜观察孢子超微结构、菌丝形态和菌丝通透性,研究其抑菌机制。当脂肽浓度为1 mg/mL时,对镰刀菌孢子萌发的抑制率达到78.8%,第3天培养的镰刀菌生物量为未添加脂肽对照组的24.5%。在相同浓度条件下,扫描电镜下显微镜观察发现,脂肽作用下镰刀菌孢子呈念珠状;普通显微镜下观察到,脂肽处理后菌丝变为不分离;荧光显微镜下观察到,脂肽可以增加镰刀菌菌丝的膜通透性。
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引用次数: 0
Characterization of Pacific abalone(Haliotis discus hannai)karyotype by C-banding and fluorescence in situ hybridization with rDNA 用c -带和rDNA荧光原位杂交鉴定太平洋鲍鱼核型
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38481
Mingyi Cai, Xiande Liu, Ziying Chen, B. Cai, C. Ke
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引用次数: 3
Effects of three feeding models on growth,gonad yield and gonad quality of the sea urchin(Strongylocentrotus intermedius) 三种摄食模式对海胆生长、性腺产量和性腺质量的影响
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38485
Haisen Zhou, Yaqing Chang, Shibin Luo, Xiaofei Tian, Weijie Zhang, Chong Zhao
Effects of three feeding models on growth rates throughout the whole growth cycle,gonad yield and gonad quality at harvest of the sea urchin Strongylocentrotus intermedius were studied.Six-month-old sea urchins were selected and fed on three diets kelp(E1),kelp+mussel(E2),maize+mussel(E3)to harvest.The test diameter and live body weight of sea urchins were measured every two months.The gonad weight,gonad moisture content and gonad color were measured at the end of the experiment.Results showed that:the feeding model significantly affected(P0.01)the test diameter and live body weight of the sea urchin during its growth stage.The test diameter and live body weight performed as:E2E1E3 among feeding models.The feeding model significantly affected most specific growth rates(SGRs)of the test diameter and live body weight(P0.01),which ranked as:E2≥E1E3.The feeding model significantly affected the gonad yield and gonad quality at harvest(P0.05 or P0.01).E2[female:(7.58±1.21)g,male:(7.74±1.95)g]was the optimal model for the gonad wet weight,followed by E1 [female:(4.50±1.20)g,male:(4.87±1.02)g].E3[female:(2.66±1.02)g,male:(2.32±0.75)g]was the worst model.E2(female:15.07%±1.84%,male:15.83%±3.01%)was the optimal model for the gonad index,followed by E1(female:11.54%±4.94%,male:11.84%±3.70%)and E2(female:12.48%±4.33%,male:12.78%±3.73%).E2 and E1 were the optimal models for the gonad moisture content and gonad color,while E3 was the weakest.Effects of the feeding model on male or female sea urchins were similar.The result suggested that,S.intermedius can grow good test diameter by feeding kelp only.Animal protein can significantly improve the growth rate and gonadal production of S.intermedius.Kelp+mussel model can be applied to improve the culture efficiency of the sea urchin.Maize had no beneficial effect on the promotion of the growth,gonad yield and quality of the sea urchin.Even if animal protein was added,maize+mussel can hardly be an alternative feeding model in aquaculture of S.intermedius.
研究了三种摄食模式对中粗圆海胆(Strongylocentrotus intermedius)全生长周期生长速率、收获期性腺产量和性腺质量的影响。选取6月龄海胆,分别饲喂海带(E1)、海带+贻贝(E2)、玉米+贻贝(E3) 3种饲料进行收获。每两个月测量一次海胆的试验直径和活重。试验结束时测定性腺重量、性腺含水量和性腺颜色。结果表明:饲养模式对海胆生长阶段的试验直径和活重有极显著影响(P0.01)。饲养模型的试验直径和活重分别为:E2E1E3。饲喂模式对试验直径和活重的大部分特定生长率(sgr)影响显著(P0.01),排序为:E2≥E1E3。喂养模型显著影响性腺产量和性腺质量在收获(P0.05或P0.01) .E2(女:g(7.58±1.21),男:(7.74±1.95)g)是最优模型性腺湿重,其次是E1(女:g(4.50±1.20),男:(4.87±1.02)g] .E3(女:g(2.66±1.02),男:(2.32±0.75)g)是最糟糕的model.E2(女:15.07%±1.84%,男:15.83%±3.01%)最优模型的性腺指数,其次是E1(女:11.54%±4.94%,男:11.84%±3.70%)和E2(女:12.48%±4.33%,男:12.78%±3.73%)。E2和E1为最佳模型,E3为最弱模型。摄食模式对雄性和雌性海胆的影响相似。结果表明,仅以海带为食可使中间棘藻生长出较好的试验直径。动物蛋白能显著提高中海胆的生长率和生殖腺产量,海带+贻贝模式可用于提高海胆的培养效率。玉米对海胆的生长、性腺产量和品质没有促进作用。即使在饲料中添加动物蛋白,玉米+贻贝也很难作为中间梭菌的替代饲养模式。
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引用次数: 4
Analysis of genetic structure and growth traits in Barbus capito using microsatellite markers 利用微卫星标记分析头鲈的遗传结构和生长性状
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38607
Lu Cui-yun, Geng Longwu, Li Chao, Cheng Lei, Sun Xiao-wen, Xu Wei
Barbus capito is an endemic species in the Aral Sea of Uzbekistan.It is well-known for its salt tolerance and fast growth,and is a valuable food source in the region.The species was introduced to China in 2003 and F1 was obtained using artificial propagation in 2010.As an introduced species,B.capito has the relatively limited genetic resources due to the small founder population size.It is very important to effectively protect and utilize the existing gene resources in breeding practice.In this study,24 microsatellite markers were selected to analyze the genetic structure in cultured F1 population including 96 individuals.A total of 74 alleles were detected and the length of fragments ranged from 109 to 367 bp.The number of alleles per locus was from 2 to 5,and the mean was 3.0833.The effective number of alleles(Ne)ranged from 1.144 5 to 4.626 4 with an average of 2.265 6.The observed heterozygosity(Ho)and the expected heterzygosity(He)varied from 0.135 4 to 1.000 0(mean=0.538 4)and from 0.126 9 to 0.788 1(mean=0.487 2),respectively.The value of polymorphic information content(PIC)was between 0.118 3 and 0.749 0 with an average of 0.428 1,and this result indicated that the level of genetic diversity was moderate(0.25≤PIC0.50).The population accorded with Hardy-Weinberg equilibrium checking by χ2 test except 8 markers including B1,B20,B32,B37,B45,B51,B68,and BC43.In addition,the correlation was analyzed between 24 microsatellite markers and growth traits using the GLM procedure of SPSS 19.0.As a result,there were 8 markers that had a significant(P0.05)impact on growth traits.Six markers including B1,B20,B45,B51,B59,and BC38 had a significant(P0.05)impact on body weight,length,height,and thickness.B26 had a significant(P0.05)impact on body weight,height,and thickness.BC3 had a significant(P0.05)impact on body weight and length.Superior genotypes were obtained using Duncan's multiple comparison.
头鳞鱼是乌兹别克斯坦咸海的特有物种。它以耐盐性和生长速度快而闻名,是该地区宝贵的食物来源。本种于2003年引进中国,2010年人工繁殖获得F1。作为引进种,B。由于创始种群规模小,卡皮托的遗传资源相对有限。有效保护和利用现有基因资源在育种实践中具有十分重要的意义。本研究选取24个微卫星标记,对96个培养F1群体进行遗传结构分析。共检测到74个等位基因,片段长度在109 ~ 367 bp之间。每个位点的等位基因数为2 ~ 5个,平均值为3.0833个。有效等位基因(Ne)数为1.144 ~ 4.626,平均为2.265。观察杂合度(Ho)和期望杂合度(He)的变化范围分别为0.135 4 ~ 1.000 0(平均值=0.538 4)和0.126 9 ~ 0.788 1(平均值=0.487 2)。多态性信息含量(PIC)介于0.118 3 ~ 0.749 0之间,平均为0.428 1,表明遗传多样性水平为中等(0.25≤PIC0.50)。除B1、B20、B32、B37、B45、B51、B68、BC43 8个标记外,其余标记均符合Hardy-Weinberg平衡检验。此外,采用SPSS 19.0的GLM程序对24个微卫星标记与生长性状进行相关性分析。由此可见,有8个标记对生长性状有显著影响(P0.05)。B1、B20、B45、B51、B59、BC38 6个标记对体重、长、高、厚的影响均显著(P0.05)。B26对体重、身高、厚度有显著影响(P0.05)。BC3对体重和体长有显著影响(P0.05)。采用Duncan’s多重比较获得了优良的基因型。
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引用次数: 0
Molecular cloning and expression pattern analysis of signal transducer and activator of transcription(Lv-STAT)from the Litopenaeus vannamei 凡纳滨对虾信号转导和转录激活因子(Lv-STAT)的克隆及表达模式分析
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38632
Ling Zhang, Yichen Liu, Yichen Zhang, Yan Sun, Xuyun Gen, Jinsheng Sun
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引用次数: 0
Observation on tetrad development and formation of sex phenotype of Pyropia haitanensis blades in natural conditions 自然条件下海檀火杉叶片四分体发育及性别表型形成的观察
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38670
Y. Zhang, Xinghong Yan
The cross between a red-mutant(R,♀)and a wild type(W,♂)of Pyropia haitanensis in laboratory demonstrated that its gametophytic blades were mainly monoecious.However,sexual observations showed a contrary result in the wild populations of this species.In order to clarify the real sex of the wild blades,some of the key issues related to this discrepancy were studied in this paper.Sequencing analysis of 5.8S rDNA region demonstrated that the monoecious and dioecious blades in wild populations of P.haitanensis were the same species.In nature,the heterozygous conchocelis produced in the cross between a red mutant and the wild type was cultivated,and the conchospores released from mature conchocelis were cultivated into F1 blades.Microscopic observation showed that two parental color sectors(W sector and R sector)and two recombinant color sectors(R′ sector and W′ sector)appeared in F1 blades,and 95.6% of the young blades(about 5 mm in length)were linearly sectored with 2-4 color-sectors.Besides,when those young blades grow up,each mature color-sector in the sectored blade was unisexual(either male or female).Therefore,the color-sectored blades were also the sex-sectored blades.Those findings tallylied with those obtained in laboratory,indicating that neither the position of meiosis nor segregation mode of the parental sex was change in natural conditions.However,during subsequent development of the young blades,one or two basal color-sector(s)was arrested severely.As a result,they formed very small areas on the blade which were hardly discerned by naked eyes.The area composed the rhizoid or basal part of the adult blade which could hardly maturate.Nearly entire blade was derived from one or two top color-sector(s),therefore color-sectored blades dropped to 42.1%.However,the uppermost sector took very large area of the blade and its maturity was much earlier than the middle and basal part.As a result,in the beginning and middle stages of the maturity,almost all the mature parts of the blades were in the upmost sector,and their phenotype showed unisexual even though they were monoecious actually.At the end of maturity of the blades,the middle sectors started to maturate,so the percentage of monoecious blades increased significantly.The results above showed that the wild blades of P.haitanensis in nature were also mainly monoecious.However,the probability for observation of its real sex was greatly reduced because of the uneven development of the tetrad and the asynchronous maturity of the top,middle and base of the blades.Due to these factors,one-time sampled by naked eyes often revealed that the wild blades were dioecious phenotype,with a few exceptions of monoecious phenotype.
对海檀焦斑(Pyropia haitanensis)红突变体(R,♀)与野生型(W,♂)的室内杂交结果表明,其配子体叶片以雌雄同株为主。然而,在野生种群中,性别观察却显示出相反的结果。为了弄清野生叶片的真实性别,本文对与这一差异有关的一些关键问题进行了研究。5.8S rDNA区序列分析表明,海檀野生居群的雌雄异株叶片属同一种。在自然界中,对红色突变体与野生型杂交产生的杂合螺进行培养,将成熟螺释放的螺孢子培养成F1叶片。显微镜观察表明,F1叶片存在2个亲本色区(W区和R区)和2个重组色区(R '区和W '区),95.6%的幼叶片(长约5 mm)被2-4个色区线性分割。此外,当这些年轻叶片长大时,扇形叶片中的每个成熟色区都是单性的(要么是雄性,要么是雌性)。因此,颜色扇形叶片也是性别扇形叶片。这些结果与实验室实验结果吻合,表明在自然条件下减数分裂的位置和亲本性别的分离方式都没有发生变化。然而,在随后的年轻叶片发育过程中,一个或两个基色区被严重阻滞。结果,它们在叶片上形成了非常小的区域,肉眼很难辨认。该区域由几乎不成熟的成叶的根状或基状部分组成。几乎整个叶片来源于一个或两个顶部颜色扇区,因此颜色扇区叶片下降到42.1%。而叶片的最上部占据了很大的面积,成熟期远早于中部和基部。因此,在成熟期的开始和中期,叶片的成熟部分几乎都在最上面的扇区,尽管它们实际上是雌雄同株,但它们的表型却表现为单性。叶片成熟期结束时,中间部分开始成熟,雌雄同株叶片比例显著增加。上述结果表明,自然界野生海檀叶片也以雌雄同株为主。然而,由于四分体发育不均匀,叶片的上、中、基部不同步成熟,大大降低了观察到其真实性别的概率。由于这些因素的影响,单次裸眼取样往往显示野生叶片为雌雄异株表型,少数为雌雄同株表型。
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引用次数: 4
Prokaryotic expression and activity analysis of insulin-like growth factor-I from Epinephelus septemfasciatus 胰岛素样生长因子- 1的原核表达及活性分析
Q4 Environmental Science Pub Date : 2013-01-01 DOI: 10.3724/SP.J.1231.2013.38691
Shengyi Chen, Xinfu Liu, Yongjiang Xu, Zhiliang Liu, Xuezhou Liu, Bao Shi, Yanyan Wang
In order to study the underlying molecular mechanisms for growth of Epinephelus septemfasciatus,the insulin-like growth factorⅠ(IGF-Ⅰ)mature peptide sequence was amplified from E.septemfasciatus liver with RT-PCR method.It was predicted that the mature peptide was composed of 210 base pairs,which encodes 70 amino acid residues and consists of B-C-A-D four functional domains.The matured peptide fragment was subcloned into the expression vector pET-28a and was successfully expressed in E.coli BL21(DE3)cell.The result of SDS-PAGE analysis indicated that the fusion protein expressed in the form of inclusion bodies with molecular weight of 11 ku and maximally amounted to 51.8% of the whole protein in the E.coli cell 3 hours after being induced with IPTG.The purified recombinant protein was obtained through denaturation,purification and refolding.The Western-blotting indicated that the recombinant protein had specifically been recognized by 6×His antibody.The proliferation experiment showed that the purified IGF-Ⅰ fusion protein could significantly promote the proliferation of breast cancer cells MDA231,and this indicated that it has biological activity.
为了研究七星石斑鱼生长的潜在分子机制,采用RT-PCR方法从七星石斑鱼肝脏中扩增胰岛素样生长因子Ⅰ(IGF-Ⅰ)成熟肽序列。预测该成熟肽由210个碱基对组成,编码70个氨基酸残基,由B-C-A-D四个功能域组成。将成熟的肽片段亚克隆到表达载体pET-28a中,在大肠杆菌BL21(DE3)细胞中成功表达。SDS-PAGE分析结果表明,融合蛋白在IPTG诱导3 h后以包涵体形式表达,分子量为11 ku,最大占总蛋白的51.8%。经变性、纯化、重折叠得到纯化的重组蛋白。Western-blotting表明重组蛋白被6×His抗体特异性识别。增殖实验表明,纯化后的IGF-Ⅰ融合蛋白能显著促进乳腺癌细胞MDA231的增殖,说明其具有生物活性。
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