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Integrated Transcriptomic and Proteomic Analyses Reveal Molecular Mechanism of Response to Heat Shock in Morchella sextelata.
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-18 DOI: 10.3390/jof11010076
Jiexiong Zhang, Yanxia Li, Yifan Mao, Yesheng Zhang, Botong Zhou, Wei Liu, Wen Wang, Chen Zhang

Morels (Morchella spp.), as one of the rare macroascomycetes that can be cultivated artificially, possess significant economic and scientific values. Morel cultivation is highly sensitive to elevated temperatures; however, the mechanisms of their response to heat shock remain poorly understood. This study integrated transcriptomic and quantitative proteomic analyses of two M. sextelata strains with different thermotolerance (labeled as strains C and D) under normal (18 °C) and high temperature (28 °C) conditions. From over 9300 transcripts and 5000 proteins, both consistency and heterogeneity were found in response to heat shock between the two strains. Both strains displayed a capacity to maintain cellular homeostasis in response to heat shock through highly expressed cell wall integrity (CWI) pathways, heat shock proteins (HSPs), and antioxidant systems. However, strain D, which exhibited stronger thermotolerance, specifically upregulated the ubiquitin ligase Rsp5, thereby further promoting the expression of HSPs, which may be a key factor influencing the thermotolerance difference among M. sextelata strains. A conceptual model of the heat shock adaptation regulatory network in M. sextelata was proposed for the first time; the results provide novel insights into the thermotolerance response mechanisms of macroascomycetes and valuable resources for the breeding enhancement of thermotolerant morel strains.

{"title":"Integrated Transcriptomic and Proteomic Analyses Reveal Molecular Mechanism of Response to Heat Shock in <i>Morchella sextelata</i>.","authors":"Jiexiong Zhang, Yanxia Li, Yifan Mao, Yesheng Zhang, Botong Zhou, Wei Liu, Wen Wang, Chen Zhang","doi":"10.3390/jof11010076","DOIUrl":"10.3390/jof11010076","url":null,"abstract":"<p><p>Morels (<i>Morchella</i> spp.), as one of the rare macroascomycetes that can be cultivated artificially, possess significant economic and scientific values. Morel cultivation is highly sensitive to elevated temperatures; however, the mechanisms of their response to heat shock remain poorly understood. This study integrated transcriptomic and quantitative proteomic analyses of two <i>M. sextelata</i> strains with different thermotolerance (labeled as strains C and D) under normal (18 °C) and high temperature (28 °C) conditions. From over 9300 transcripts and 5000 proteins, both consistency and heterogeneity were found in response to heat shock between the two strains. Both strains displayed a capacity to maintain cellular homeostasis in response to heat shock through highly expressed cell wall integrity (CWI) pathways, heat shock proteins (HSPs), and antioxidant systems. However, strain D, which exhibited stronger thermotolerance, specifically upregulated the ubiquitin ligase <i>Rsp5</i>, thereby further promoting the expression of HSPs, which may be a key factor influencing the thermotolerance difference among <i>M. sextelata</i> strains. A conceptual model of the heat shock adaptation regulatory network in <i>M. sextelata</i> was proposed for the first time; the results provide novel insights into the thermotolerance response mechanisms of macroascomycetes and valuable resources for the breeding enhancement of thermotolerant morel strains.</p>","PeriodicalId":15878,"journal":{"name":"Journal of Fungi","volume":"11 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11766532/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143033230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diversity and Multigene Phylogeny of the Genus Floccularia (Agaricales, Basidiomycota).
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-17 DOI: 10.3390/jof11010074
Zai-Wei Ge, Hua Qu, Malka Saba, Tian Gao, Martin Ryberg

Floccularia is known as a northern-hemisphere-distributed genus with important economic values, especially in Western China. However, its species diversity in Asia and the phylogeny of this genus have not been critically studied. Based on worldwide sampling and multi-locus DNA sequence data (ITS, LSU, rpb2, tef1), the phylogeny of Floccularia was reconstructed, and the species diversity in Asia was critically studied on the basis of morphology and phylogeny. The results showed that five phylogenetic species can be recognized in this genus, of which there are four species in Asia, two species in North America and one species in Europe. According to our result, in addition to F. luteovirens, three new species, F. asiatica, F. flava and F. sinensis, were distributed in Asia, while in North America, F. pitkinensis and F. fusca could be synonyms of F. albolanaripes, as both species are phylogenetically intermingled within F. albolanaripes. Morphological descriptions of new species, color images of basidiomes, line drawings of their microscopic features, and a key to the Asian species of this genus are provided. Our study reconstructed the phylogeny of Floccularia for the first time and clarified the species diversity of Floccularia in Asia and suggests the need for detailed study of American specimens in order to accurately assess the diversity of Floccularia in America.

{"title":"Diversity and Multigene Phylogeny of the Genus <i>Floccularia</i> (Agaricales, Basidiomycota).","authors":"Zai-Wei Ge, Hua Qu, Malka Saba, Tian Gao, Martin Ryberg","doi":"10.3390/jof11010074","DOIUrl":"10.3390/jof11010074","url":null,"abstract":"<p><p><i>Floccularia</i> is known as a northern-hemisphere-distributed genus with important economic values, especially in Western China. However, its species diversity in Asia and the phylogeny of this genus have not been critically studied. Based on worldwide sampling and multi-locus DNA sequence data (ITS, LSU, <i>rpb2</i>, <i>tef1</i>), the phylogeny of <i>Floccularia</i> was reconstructed, and the species diversity in Asia was critically studied on the basis of morphology and phylogeny. The results showed that five phylogenetic species can be recognized in this genus, of which there are four species in Asia, two species in North America and one species in Europe. According to our result, in addition to <i>F. luteovirens</i>, three new species, <i>F. asiatica</i>, <i>F. flava</i> and <i>F. sinensis</i>, were distributed in Asia, while in North America, <i>F. pitkinensis</i> and <i>F. fusca</i> could be synonyms of <i>F. albolanaripes</i>, as both species are phylogenetically intermingled within <i>F. albolanaripes</i>. Morphological descriptions of new species, color images of basidiomes, line drawings of their microscopic features, and a key to the Asian species of this genus are provided. Our study reconstructed the phylogeny of <i>Floccularia</i> for the first time and clarified the species diversity of <i>Floccularia</i> in Asia and suggests the need for detailed study of American specimens in order to accurately assess the diversity of <i>Floccularia</i> in America.</p>","PeriodicalId":15878,"journal":{"name":"Journal of Fungi","volume":"11 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11766946/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143032972","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Botrytis cinerea PMT4 Is Involved in O-Glycosylation, Cell Wall Organization, Membrane Integrity, and Virulence.
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-17 DOI: 10.3390/jof11010071
Verónica Plaza, Alice Pasten, Luz A López-Ramírez, Héctor M Mora-Montes, Julia Rubio-Astudillo, Evelyn Silva-Moreno, Luis Castillo

Proteins found within the fungal cell wall usually contain both N- and O-oligosaccharides. N-glycosylation is the process where these oligosaccharides (hereinafter: glycans) are attached to asparagine residues, while in O-glycosylation the glycans are covalently bound to serine or threonine residues. The PMT family is grouped into PMT1, PMT2, and PMT4 subfamilies. Using bioinformatics analysis within the Botrytis cinerea genome database, an ortholog to Saccharomyces cerevisiae Pmt4 and other fungal species was identified. The aim of this study was to assess the relevance of the bcpmt4 gene in B. cinerea glycosylation. For this purpose, the bcpmt4 gene was disrupted by homologous recombination in the B05.10 strain using a hygromycin B resistance cassette. Expression of bcpmt4 in S. cerevisiae ΔScpmt4 or ΔScpmt3 null mutants restored glycan levels like those observed in the parental strain. The phenotypic analysis showed that Δbcpmt4 null mutants exhibited significant changes in hyphal cell wall composition, including reduced mannan levels and increased amounts of chitin and glucan. Furthermore, the loss of bcpmt4 led to decreased glycosylation of glycoproteins in the B. cinerea cell wall. The null mutant lacking PMT4 was hypersensitive to a range of cell wall perturbing agents, antifungal drugs, and high hydrostatic pressure. Thus, in addition to their role in glycosylation, the PMT4 is required to virulence, biofilm formation, and membrane integrity. This study adds to our knowledge of the role of the B. cinerea bcpmt4 gene, which is involved in glycosylation and cell biology, cell wall formation, and antifungal response.

{"title":"<i>Botrytis cinerea</i> PMT4 Is Involved in <i>O</i>-Glycosylation, Cell Wall Organization, Membrane Integrity, and Virulence.","authors":"Verónica Plaza, Alice Pasten, Luz A López-Ramírez, Héctor M Mora-Montes, Julia Rubio-Astudillo, Evelyn Silva-Moreno, Luis Castillo","doi":"10.3390/jof11010071","DOIUrl":"10.3390/jof11010071","url":null,"abstract":"<p><p>Proteins found within the fungal cell wall usually contain both <i>N</i>- and <i>O</i>-oligosaccharides. <i>N</i>-glycosylation is the process where these oligosaccharides (hereinafter: glycans) are attached to asparagine residues, while in <i>O</i>-glycosylation the glycans are covalently bound to serine or threonine residues. The <i>PMT</i> family is grouped into <i>PMT1</i>, <i>PMT2</i>, and <i>PMT4</i> subfamilies. Using bioinformatics analysis within the <i>Botrytis cinerea</i> genome database, an ortholog to <i>Saccharomyces cerevisiae</i> Pmt4 and other fungal species was identified. The aim of this study was to assess the relevance of the <i>bcpmt4</i> gene in <i>B. cinerea</i> glycosylation. For this purpose, the <i>bcpmt4</i> gene was disrupted by homologous recombination in the B05.10 strain using a hygromycin B resistance cassette. Expression of <i>bcpmt4</i> in <i>S. cerevisiae</i> Δ<i>Scpmt4</i> or Δ<i>Scpmt3</i> null mutants restored glycan levels like those observed in the parental strain. The phenotypic analysis showed that Δ<i>bcpmt4</i> null mutants exhibited significant changes in hyphal cell wall composition, including reduced mannan levels and increased amounts of chitin and glucan. Furthermore, the loss of <i>bcpmt4</i> led to decreased glycosylation of glycoproteins in the <i>B. cinerea</i> cell wall. The null mutant lacking <i>PMT4</i> was hypersensitive to a range of cell wall perturbing agents, antifungal drugs, and high hydrostatic pressure. Thus, in addition to their role in glycosylation, the <i>PMT4</i> is required to virulence, biofilm formation, and membrane integrity. This study adds to our knowledge of the role of the <i>B. cinerea bcpmt4</i> gene, which is involved in glycosylation and cell biology, cell wall formation, and antifungal response.</p>","PeriodicalId":15878,"journal":{"name":"Journal of Fungi","volume":"11 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11766925/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143033235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Exocyst Subunits EqSec5 and EqSec6 Promote Powdery Mildew Fungus Growth and Pathogenicity.
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-17 DOI: 10.3390/jof11010073
Jinyao Yin, Xuehuan Zhu, Yalong Chen, Yanyang Lv, Jiaxin Shan, Yuhan Liu, Wenbo Liu, Weiguo Miao, Xiao Li

The exocyst complex in eukaryotic cells modulates secretory vesicle transportation to promote exocytosis. The exocyst is also required for the hyphal growth and pathogenic development of several filamentous phytopathogens. Obligate biotrophic powdery mildew fungi cause considerable damage to many cash crops; however, the exocyst's roles in this group of fungi is not well studied. To verify the functions of the exocyst in powdery mildew fungus, we identified two exocyst subunits, EqSec5 and EqSec6, from Erysiphe quercicola, a powdery mildew fungus that infects the rubber tree Hevea brasiliensis. When GFP-fused EqSec5 and EqSec6 were introduced into E. quercicola and another phytopathogenic fungus, Magnaporthe oryzae, they primarily localized to the hyphal tip region. Inducing gene silencing of EqSec5 or EqSec6 caused growth and infection defects, and those defects could not be fully restored under the NADPH oxidase inhibitor treatment to the plant. The silenced strains also induced the host defense response including reactive oxygen species accumulation and callose deposition. The silencing of EqSec5 or EqSec6 also inhibited the secretion of the effector protein EqIsc1, interrupting plant salicylic acid biosynthesis. Yeast two-hybrid and gene overexpression assays suggested that EqSec5 and EqSec6 interact with each other and can complement each other's function during host infection. Overall, our study provides evidence that the exocyst in this powdery mildew fungus facilitates effector secretion, hyphal growth, and infection.

{"title":"The Exocyst Subunits EqSec5 and EqSec6 Promote Powdery Mildew Fungus Growth and Pathogenicity.","authors":"Jinyao Yin, Xuehuan Zhu, Yalong Chen, Yanyang Lv, Jiaxin Shan, Yuhan Liu, Wenbo Liu, Weiguo Miao, Xiao Li","doi":"10.3390/jof11010073","DOIUrl":"10.3390/jof11010073","url":null,"abstract":"<p><p>The exocyst complex in eukaryotic cells modulates secretory vesicle transportation to promote exocytosis. The exocyst is also required for the hyphal growth and pathogenic development of several filamentous phytopathogens. Obligate biotrophic powdery mildew fungi cause considerable damage to many cash crops; however, the exocyst's roles in this group of fungi is not well studied. To verify the functions of the exocyst in powdery mildew fungus, we identified two exocyst subunits, EqSec5 and EqSec6, from <i>Erysiphe quercicola</i>, a powdery mildew fungus that infects the rubber tree <i>Hevea brasiliensis</i>. When GFP-fused EqSec5 and EqSec6 were introduced into <i>E. quercicola</i> and another phytopathogenic fungus, <i>Magnaporthe oryzae</i>, they primarily localized to the hyphal tip region. Inducing gene silencing of <i>EqSec5</i> or <i>EqSec6</i> caused growth and infection defects, and those defects could not be fully restored under the NADPH oxidase inhibitor treatment to the plant. The silenced strains also induced the host defense response including reactive oxygen species accumulation and callose deposition. The silencing of <i>EqSec5</i> or <i>EqSec6</i> also inhibited the secretion of the effector protein EqIsc1, interrupting plant salicylic acid biosynthesis. Yeast two-hybrid and gene overexpression assays suggested that EqSec5 and EqSec6 interact with each other and can complement each other's function during host infection. Overall, our study provides evidence that the exocyst in this powdery mildew fungus facilitates effector secretion, hyphal growth, and infection.</p>","PeriodicalId":15878,"journal":{"name":"Journal of Fungi","volume":"11 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11767214/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143032763","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Invasive Aspergillosis in the Intensive Care Unit.
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-17 DOI: 10.3390/jof11010070
Anna Zubovskaia, Jose A Vazquez

Invasive aspergillosis (IA) is a fungal infection, which has traditionally been associated with neutropenia and immunosuppressive therapies. Our understanding of invasive aspergillosis has been evolving and, in the past few decades, IA among ICU patients has been recognized as a common infection and has become more widely recognized. The diagnosis and management of invasive aspergillosis in the ICU is particularly challenging, due to the unstable clinical condition of the patients, lack of diagnostic markers, increased risk of further clinical deterioration, multiple comorbidities, and a need for early assessment and treatment. In this article, we will discuss the challenges and pitfalls of the diagnosis and management of invasive aspergillosis in an ICU setting, along with a review of the current literature that is pertinent and specific to this population.

{"title":"Invasive Aspergillosis in the Intensive Care Unit.","authors":"Anna Zubovskaia, Jose A Vazquez","doi":"10.3390/jof11010070","DOIUrl":"10.3390/jof11010070","url":null,"abstract":"<p><p>Invasive aspergillosis (IA) is a fungal infection, which has traditionally been associated with neutropenia and immunosuppressive therapies. Our understanding of invasive aspergillosis has been evolving and, in the past few decades, IA among ICU patients has been recognized as a common infection and has become more widely recognized. The diagnosis and management of invasive aspergillosis in the ICU is particularly challenging, due to the unstable clinical condition of the patients, lack of diagnostic markers, increased risk of further clinical deterioration, multiple comorbidities, and a need for early assessment and treatment. In this article, we will discuss the challenges and pitfalls of the diagnosis and management of invasive aspergillosis in an ICU setting, along with a review of the current literature that is pertinent and specific to this population.</p>","PeriodicalId":15878,"journal":{"name":"Journal of Fungi","volume":"11 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11766804/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143033240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deletion of bZIP Transcription Factor PratfA Reveals Specialized Metabolites Potentially Regulating Stress Response in Penicillium raistrickii.
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-17 DOI: 10.3390/jof11010072
Anxin Zhang, Shu Zhang, Xinran Xu, Wen-Bing Yin

Fungal secondary metabolism (SM) is highly correlated with physiological processes that are typically regulated by pleiotropic regulators. In this study, we purposefully altered PratfA, a crucial regulator associated with oxidative stress in Penicillium raistrickii CGMCC 3.1066. After the knockout of PratfA, a novel polyketide (PK) raistrilide A (1) and the known nonribosomal peptide (NRP) tunicoidine (2) subsequently disappeared. Notably, compound 1 is a rare octaketone derivative and contains two unsubstituted cis-double bonds, demonstrating its unique biosynthetic mechanism. The knockout of PratfA resulted in the disappearance of 1-2 and greatly increased the susceptibility of ΔPratfA mutant strain to oxidative stress, rendering it nearly impossible to survive in such environments. At present, the OE⸬PratfA strain showed no phenotypic or oxidative stress sensitivity differences compared to the wild-type strain. Our findings highlight that the oxidative-stress-related transcription factor (TF) PratfA influences SM pathways in P. raistrickii. The manipulation of regulatory factors can guide the discovery of novel natural products (NPs).

{"title":"Deletion of bZIP Transcription Factor <i>PratfA</i> Reveals Specialized Metabolites Potentially Regulating Stress Response in <i>Penicillium raistrickii</i>.","authors":"Anxin Zhang, Shu Zhang, Xinran Xu, Wen-Bing Yin","doi":"10.3390/jof11010072","DOIUrl":"10.3390/jof11010072","url":null,"abstract":"<p><p>Fungal secondary metabolism (SM) is highly correlated with physiological processes that are typically regulated by pleiotropic regulators. In this study, we purposefully altered <i>PratfA</i>, a crucial regulator associated with oxidative stress in <i>Penicillium raistrickii</i> CGMCC 3.1066. After the knockout of <i>PratfA</i>, a novel polyketide (PK) raistrilide A (<b>1</b>) and the known nonribosomal peptide (NRP) tunicoidine (<b>2</b>) subsequently disappeared. Notably, compound <b>1</b> is a rare octaketone derivative and contains two unsubstituted <i>cis</i>-double bonds, demonstrating its unique biosynthetic mechanism. The knockout of <i>PratfA</i> resulted in the disappearance of <b>1</b>-<b>2</b> and greatly increased the susceptibility of Δ<i>PratfA</i> mutant strain to oxidative stress, rendering it nearly impossible to survive in such environments. At present, the <i>OE⸬PratfA</i> strain showed no phenotypic or oxidative stress sensitivity differences compared to the wild-type strain. Our findings highlight that the oxidative-stress-related transcription factor (TF) <i>PratfA</i> influences SM pathways in <i>P</i>. <i>raistrickii</i>. The manipulation of regulatory factors can guide the discovery of novel natural products (NPs).</p>","PeriodicalId":15878,"journal":{"name":"Journal of Fungi","volume":"11 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11766536/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143032759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mycological Profile and Associated Factors Among Patients with Dermatophytosis in Astana, Kazakhstan.
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-16 DOI: 10.3390/jof11010065
Alma Aimoldina, Ainura Smagulova, Gulnar Batpenova, Nellie Konnikov, Togzhan Algazina, Zulfiya Jetpisbayeva, Dinara Azanbayeva, Darkhan Amantayev, Vladimir Kiyan

Dermatophytosis, also known as Tinea infection, remains a significant interdisciplinary concern worldwide. This dermatophyte infection may be more serious in individuals with underlying somatic diseases, immunodeficiencies, endocrine disorders, or chronic illnesses. This study analyzed 313 patients with suspected dermatophytosis. Data were gathered through questionnaires and medical records were reviewed. Biological samples were cultured on Sabouraud dextrose agar, and PCR was employed to assess the genetic diversity of strains. Statistical analysis was conducted using SPSS version 26. The overall prevalence of dermatophytosis in the cohort was 30.4%. Among the cultured isolates, 73.7% were identified as Microsporum canis, while 26.3% were identified as Trichophyton species, including T. mentagrophytes, T. tonsurans, and T. verrucosum. Several factors were significantly associated with an increased risk of dermatophytosis, including the following: male gender (AOR = 1.97), age 1-10 years (AOR = 3.80), living in rural areas (AOR = 2.30), visiting public bathhouses (AOR = 2.32), visiting massage parlors (AOR = 1.39), contact with cats (AOR = 2.32), family history of dermatophytosis (AOR = 3.04), and sexual contact with an infected or unknown partner (AOR = 3.08). Dermatophytosis was identified in approximately one third of the patients by culture (30.4%), with the risk heightened in individuals under 10 years old (43.6%), those living in rural areas (33.3%), and those with a family history of dermatophytosis (35.7%) or close contact with cats (39.4%). The findings underscore the need for strengthened preventive measures and targeted diagnostics, particularly among high-risk groups.

{"title":"Mycological Profile and Associated Factors Among Patients with Dermatophytosis in Astana, Kazakhstan.","authors":"Alma Aimoldina, Ainura Smagulova, Gulnar Batpenova, Nellie Konnikov, Togzhan Algazina, Zulfiya Jetpisbayeva, Dinara Azanbayeva, Darkhan Amantayev, Vladimir Kiyan","doi":"10.3390/jof11010065","DOIUrl":"10.3390/jof11010065","url":null,"abstract":"<p><p>Dermatophytosis, also known as Tinea infection, remains a significant interdisciplinary concern worldwide. This dermatophyte infection may be more serious in individuals with underlying somatic diseases, immunodeficiencies, endocrine disorders, or chronic illnesses. This study analyzed 313 patients with suspected dermatophytosis. Data were gathered through questionnaires and medical records were reviewed. Biological samples were cultured on Sabouraud dextrose agar, and PCR was employed to assess the genetic diversity of strains. Statistical analysis was conducted using SPSS version 26. The overall prevalence of dermatophytosis in the cohort was 30.4%. Among the cultured isolates, 73.7% were identified as <i>Microsporum canis</i>, while 26.3% were identified as <i>Trichophyton</i> species, including <i>T. mentagrophytes</i>, <i>T. tonsurans</i>, and <i>T. verrucosum</i>. Several factors were significantly associated with an increased risk of dermatophytosis, including the following: male gender (AOR = 1.97), age 1-10 years (AOR = 3.80), living in rural areas (AOR = 2.30), visiting public bathhouses (AOR = 2.32), visiting massage parlors (AOR = 1.39), contact with cats (AOR = 2.32), family history of dermatophytosis (AOR = 3.04), and sexual contact with an infected or unknown partner (AOR = 3.08). Dermatophytosis was identified in approximately one third of the patients by culture (30.4%), with the risk heightened in individuals under 10 years old (43.6%), those living in rural areas (33.3%), and those with a family history of dermatophytosis (35.7%) or close contact with cats (39.4%). The findings underscore the need for strengthened preventive measures and targeted diagnostics, particularly among high-risk groups.</p>","PeriodicalId":15878,"journal":{"name":"Journal of Fungi","volume":"11 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11766580/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143033280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimizing Bioaugmentation for Pharmaceutical Stabilization of Sewage Sludge: A Study on Short-Term Composting Under Real Conditions.
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-16 DOI: 10.3390/jof11010067
Gabriela Angeles-De Paz, Juan Cubero-Cardoso, Clementina Pozo, Concepción Calvo, Elisabet Aranda, Tatiana Robledo-Mahón

A significant concentration of pharmaceuticals has been detected within composted sewage sludge. Their uncomplete removal and lack of monitoring during composting neglects their potentially toxic effects when used as a soil organic amendment. Previously, we successfully implemented a bioaugmentation-composting system focused on toxicity and pharmaceuticals' concentration reduction. This method, however, comprised a long inoculant-acclimatization period, making it an unprofitable technology. Hence, this work aimed to explore a shorter and yet effective composting process by simultaneously implementing the inoculation of a native microbial consortium and the fungus Penicillium oxalicum XD 3.1 in composting piles of sewage sludge and olive prunings. All the piles were subjected to frequent inoculation, windrow turning, and monitoring of the physicochemical and biological parameters. Additionally, both the bioaugmentation stability and pharmaceuticals degradation were evaluated through different analysis and removal rates calculations. One hundred days earlier than previous attempts, both bioaugmentation treatments achieved adequate composting conditions, maintained core native populations while improving the degrading microbial diversity, and achieved around 70-72% of pharmaceutical remotion. Nevertheless, only Penicillium inoculation produced favorable toxicity results ideal for organic amendments (acute microtoxicity and phytotoxicity). Thus, a shorter but equally stable and effective degrading bioaugmentation-composting with P. oxalicum was achieved here.

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引用次数: 0
Gene Expression in Aphelid Zoospores Reveals Their Transcriptional and Translational Activity and Alacrity for Invasion.
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-16 DOI: 10.3390/jof11010068
Igor R Pozdnyakov, Alexei O Seliuk, Kristina O Barzasekova, Sergey A Karpov

In Aphelidium insulamus (Opisthokonta, Aphelida) zoospores, the expression of 7708 genes out of 7802 described genes was detected. For 589 of them, expression levels were shown to be more than 10 times higher than the median level. Among the highly expressed genes with known functions, the largest functional categories were "Cellular Metabolism", "Protein Synthesis", "Cell State Control", and "Nucleic Acid Processing". Unlike fungal zoospores, translational and transcriptional activity was demonstrated for A. insulamus zoospores. With increasing temperature, the expression of many zoospore genes changed dramatically; the expression of heat shock and chaperone protein genes multiplied more than 30 times, indicating the high sensitivity of aphelid zoospores and their response to environmental changes.

{"title":"Gene Expression in Aphelid Zoospores Reveals Their Transcriptional and Translational Activity and Alacrity for Invasion.","authors":"Igor R Pozdnyakov, Alexei O Seliuk, Kristina O Barzasekova, Sergey A Karpov","doi":"10.3390/jof11010068","DOIUrl":"10.3390/jof11010068","url":null,"abstract":"<p><p>In <i>Aphelidium insulamus</i> (Opisthokonta, Aphelida) zoospores, the expression of 7708 genes out of 7802 described genes was detected. For 589 of them, expression levels were shown to be more than 10 times higher than the median level. Among the highly expressed genes with known functions, the largest functional categories were \"Cellular Metabolism\", \"Protein Synthesis\", \"Cell State Control\", and \"Nucleic Acid Processing\". Unlike fungal zoospores, translational and transcriptional activity was demonstrated for <i>A. insulamus</i> zoospores. With increasing temperature, the expression of many zoospore genes changed dramatically; the expression of heat shock and chaperone protein genes multiplied more than 30 times, indicating the high sensitivity of aphelid zoospores and their response to environmental changes.</p>","PeriodicalId":15878,"journal":{"name":"Journal of Fungi","volume":"11 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11767097/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143033181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Human Fungal Infections: Diagnostic and Therapeutic Challenges.
IF 4.2 2区 生物学 Q2 MICROBIOLOGY Pub Date : 2025-01-16 DOI: 10.3390/jof11010066
Timoleon-Achilleas Vyzantiadis, Eleni Gavriilaki, Athanasios Tragiannidis

Fungal infections, either invasive and disseminated or cutaneous and superficial, are an important and increasing cause of morbidity [...].

{"title":"Human Fungal Infections: Diagnostic and Therapeutic Challenges.","authors":"Timoleon-Achilleas Vyzantiadis, Eleni Gavriilaki, Athanasios Tragiannidis","doi":"10.3390/jof11010066","DOIUrl":"10.3390/jof11010066","url":null,"abstract":"<p><p>Fungal infections, either invasive and disseminated or cutaneous and superficial, are an important and increasing cause of morbidity [...].</p>","PeriodicalId":15878,"journal":{"name":"Journal of Fungi","volume":"11 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11766858/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143033221","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Fungi
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