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Prevalence of ESBL resistance genes and fecal carriage of multidrug-resistant Pseudomonas aeruginosa isolates from patients with chronic kidney disease at the Laquintinie Hospital in Douala, Littoral Region, Cameroon 喀麦隆沿海地区杜阿拉laquininie医院慢性肾病患者ESBL耐药基因的流行和多重耐药铜绿假单胞菌的粪便携带
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2024.102651
Ballue S.T. Dadjo , Armelle T. Mbaveng , Michael F. Kengne , Ornella D. Tsobeng , Giresse D.T. Fonjou , Victor Kuete

Background

Pseudomonas aeruginosa is an opportunistic Gram-negative bacterium capable of causing severe infections in immunocompromised patients such as those suffering from chronic kidney disease (CKD). This study aimed to determine the resistance profile of Pseudomonas aeruginosa, and the prevalence of extended-spectrum β-lactamase (ESBL) resistance genes in patients with chronic kidney disease.

Methods

The prevalence of Pseudomonas aeruginosa was investigated in 458 patients, including 197 CKD patients and 261 patients suffering from gastrointestinal infections. The study was conducted at Laquintinie Hospital in Douala from January 2022 to December 2023. Stool samples were used to isolate Pseudomonas aeruginosa on Cetrimide agar. Antibiotic susceptibility testing was carried out using the Kirby-Bauer diffusion method. extended-spectrum β-lactamase (ESBL) resistance genes were detected by the polymerase chain reaction (PCR) method.

Results

The prevalence of fecal carriage of Pseudomonas aeruginosa was 9.17 % (n = 42/458), including twenty-nine (69.05 %) in patients with chronic kidney disease and thirteen (30.95 %) in patients without chronic kidney disease. The Pseudomonas aeruginosa isolates had a high rate of resistance to ceftazidime (72.41 %) in patients with CKD compared to patients without CKD (69.23 %). All isolates had a high resistance to ticarcillin (93.10 % and 92.31 %). The prevalence of multidrug-resistant (MDR) Pseudomonas aeruginosa isolates was 73.81 %. The MDR Pseudomonas aeruginosa were higher (70.97 % vs. 29.03 %) in patients suffering from CKD compared to patients without CKD. Up to 85.71 % of the Pseudomonas aeruginosa isolates harbored at least one ESBL gene. The blaTEM type gene (66.67 %) was the most frequently detected gene, followed by blaCTX-M (61.90 %) and blaSHV (47.62 %). ESBL resistance genes were more common in CKD patients (72.22 %) compared to patients without CKD (27.78 %).

Conclusion

These results demonstrate that antibiotics belonging to the carbapenem and aminoglycoside classes could be used for Pseudomonas aeruginosa infection. This highlights the importance of regular surveillance of multidrug resistance and extended-spectrum β-lactamase production for Pseudomonas aeruginosa infections in patients with chronic kidney disease.
背景:铜绿假单胞菌是一种机会性革兰氏阴性细菌,能够在慢性肾脏疾病(CKD)等免疫功能低下患者中引起严重感染。本研究旨在确定铜绿假单胞菌的耐药谱,以及扩展谱β-内酰胺酶(ESBL)耐药基因在慢性肾病患者中的流行情况。方法:对458例患者进行铜绿假单胞菌感染调查,其中慢性肾病197例,胃肠道感染261例。该研究于2022年1月至2023年12月在杜阿拉的拉昆蒂尼医院进行。用粪便标本在琼脂上分离铜绿假单胞菌。采用Kirby-Bauer扩散法进行药敏试验。采用聚合酶链反应(PCR)法检测广谱β-内酰胺酶(ESBL)耐药基因。结果:铜绿假单胞菌粪便携带率为9.17 % (n = 42/458),其中慢性肾病患者29例(69.05 %),非慢性肾病患者13例(30.95 %)。铜绿假单胞菌分离株在CKD患者中对头孢他啶的耐药率(72.41 %)高于非CKD患者(69.23 %)。所有分离株对替卡西林的耐药率分别为93.10 %和92.31 %。铜绿假单胞菌多药耐药(MDR)感染率为73.81 %。CKD患者的耐多药铜绿假单胞菌比无CKD患者高(70.97 % vs 29.03 %)。高达85.71% %的铜绿假单胞菌分离株含有至少一个ESBL基因。检出率最高的基因为blaTEM型基因(66.67 %),其次为blaCTX-M型基因(61.90 %)和blaSHV型基因(47.62 %)。ESBL耐药基因在CKD患者(72.22 %)中比非CKD患者(27.78 %)更常见。结论:碳青霉烯类和氨基糖苷类抗生素可用于铜绿假单胞菌感染。这突出了定期监测慢性肾病患者铜绿假单胞菌感染的多药耐药和广谱β-内酰胺酶产生的重要性。
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引用次数: 0
Impact of COVID-19 on testing, positive cases, patient characteristics, and hospital contacts for respiratory syncytial virus, influenza, and pneumococcus in Danish children COVID-19对丹麦儿童呼吸道合胞病毒、流感和肺炎球菌检测、阳性病例、患者特征和医院接触者的影响
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2025.102660
Andreas Jensen , Lone Graff Stensballe

Background

Respiratory infections substantially impact pediatric health. The COVID-19 pandemic introduced widespread non-pharmaceutical interventions, which influenced the incidence of common respiratory infections. This comprehensive study investigates the impact of these interventions on the incidence of respiratory syncytial virus, influenza, and invasive pneumococcal disease in Danish children.

Methods

We conducted a descriptive study based on a cohort of 1,790,464 Danish children from 2012 to 2022. We analyzed data from microbiology tests and hospital contacts to assess infection rates and testing patterns before, during, and after the COVID-19 pandemic. The relationships between testing and sex, age groups, chronic disease status, and hospital contacts were analyzed.

Results

We observed a marked decrease in cases of respiratory syncytial virus, influenza, and pneumococcus disease during the lockdown period. Once restrictions were lifted, there was a substantial resurgence in these infections. The frequency of testing for respiratory pathogens increased over time, with a rising proportion of healthy individuals without underlying chronic disease being tested. The proportion of positive tests linked to hospital contacts varied: there was a notable decline for respiratory syncytial virus and influenza post-lockdown, while pneumococcus cases continued to be strongly linked to hospital contacts.

Conclusion

The study highlights the impact of COVID-19 interventions on the epidemiology of pediatric respiratory infections, revealing a pattern of decreased incidence during lockdowns followed by a resurgence. More tests were carried out among an increasing proportion of healthy individuals. Such changes in testing practices and changing characteristics of tested populations have implications for understanding post-pandemic infection trends and healthcare resource allocation.
背景:呼吸道感染严重影响儿童健康。COVID-19大流行引入了广泛的非药物干预措施,影响了常见呼吸道感染的发病率。这项综合研究调查了这些干预措施对丹麦儿童呼吸道合胞病毒、流感和侵袭性肺炎球菌疾病发病率的影响。方法:我们对2012年至2022年的1,790,464名丹麦儿童进行了一项描述性研究。我们分析了微生物学测试和医院接触者的数据,以评估COVID-19大流行之前、期间和之后的感染率和测试模式。分析了检测与性别、年龄组、慢性病状况和医院接触者之间的关系。结果:我们观察到在封锁期间呼吸道合胞病毒,流感和肺炎球菌疾病的病例显着减少。一旦取消限制,这些感染就会大量复发。随着时间的推移,检测呼吸道病原体的频率也在增加,没有潜在慢性病的健康个体接受检测的比例也在上升。与医院接触者相关的阳性检测比例各不相同:呼吸道合胞病毒和流感在封锁后显著下降,而肺炎球菌病例继续与医院接触者密切相关。结论:该研究强调了COVID-19干预措施对儿童呼吸道感染流行病学的影响,揭示了封锁期间发病率下降后又卷土重来的模式。在越来越多的健康个体中进行了更多的测试。检测方法的这种变化和检测人群特征的变化对了解大流行后的感染趋势和卫生保健资源分配具有重要意义。
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引用次数: 0
Acute hemorrhagic conjunctivitis outbreaks associated with Coxsackievirus A-24 in India, 2023 2023年印度与柯萨奇病毒A-24相关的急性出血性结膜炎暴发
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2024.102626
Nutan A. Chavan , Pooja Shinde , Sanjaykumar Tikute , Rajlakshmi Vishwanathan , Avinash R. Deoshatwar , Yogesh K. Gurav , Rishabh Waghchaure , Nishat H. Ahmed , Vannavada S. Rani , Vikram Khan , Aditya Kelkar , Harsh H. Jain , Amita Jain , Mallika Lavania , Babasaheb V. Tandale

Objective

Acute hemorrhagic conjunctivitis (AHC), commonly called pink eye, saw an alarming increase in incidence from July to September 2023 in different parts of India. Pink eye occurrences had reportedly increased three to four times more than in prior years, raising concerns among the community and healthcare professionals. This study aimed to identify the aetiological agent associated with AHC in 2023, genetically characterize the agent and describe the clinical presentation.

Methods

From July to September 2023, 300 ocular and throat swab samples were collected from patients with AHC across various regions of India, including Maharashtra, Daman & Diu, Delhi, Lucknow, and Hyderabad. These samples represented a diverse geographic spread of the condition. The swabs were examined for qRT-PCR analyses, to detect adenovirus and enterovirus. Following this, conserved regions within the enteroviral 5′-UTR and VP2/3 C gene were further investigated for serotype identification.

Results

Enterovirus was found in 52.6 % (158 out of 300) of the patients. Among the enterovirus-positive samples, coxsackievirus-A24 was present in every positive sample.

Conclusion

The rise in AHC cases in India in 2023 was attributed to the Coxsackievirus-A24 strain GIV C5.
目的:从2023年7月到9月,印度不同地区的急性出血性结膜炎(AHC),俗称红眼,发病率惊人地增加。据报道,红眼病的发病率比前几年增加了三到四倍,引起了社区和保健专业人员的关注。本研究旨在确定2023年与AHC相关的病原学因子,对该因子进行遗传表征并描述其临床表现。方法:从2023年7月至9月,从印度马哈拉施特拉邦、达曼和迪乌、德里、勒克瑙和海得拉巴等不同地区的AHC患者中收集了300份眼和咽拭子样本。这些样本代表了这种情况的不同地理分布。对拭子进行qRT-PCR分析,检测腺病毒和肠病毒。随后,进一步研究肠病毒5'-UTR和VP2/3 C基因的保守区域进行血清型鉴定。结果:300例患者中有158例(52.6% %)检出肠道病毒。在肠病毒阳性样本中,每个阳性样本中都存在柯萨奇病毒a24。结论:2023年印度AHC病例的增加归因于柯萨奇病毒- a24株GIV C5。
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引用次数: 0
Effect of dolutegravir on weight changes and lipid profile compared with efavirenz in people living with HIV: A retrospective cohort study 与依非韦伦相比,多替格拉韦对HIV感染者体重变化和血脂的影响:一项回顾性队列研究
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2024.102630
Rachawit Setpakdee, Sasisopin Kiertiburanakul

Background

There are limited data on DTG-associated weight gain among treatment-naïve Asian people living with HIV (PLHIV).

Methods

Eighty-one and 100 PLHIV initiating DTG-based and efavirenz (EFV)-based antiretroviral therapy (ART), respectively, were retrospectively investigated for weight changes and lipid profiles at 6 and 12 months after ART initiation.

Results

At baseline, the DTG group had a lower mean body weight (BW) (60.7 kg vs. 64.3 kg, p = 0.071) and lower mean cholesterol level (172 mg/dL vs. 185 mg/dL, p = 0.029) than the EFV group. Mean BW remained lower in the DTG group than in the EFV group at 6 [58.2 kg vs. 66.0 kg, mean difference (MD) −7.8, p = 0.005] and 12 (59.6 kg vs. 67.0 kg, MD −7.3, p = 0.008) months. BW did not significantly change between baseline and 12 months in the DTG group (60.7 kg vs. 59.6 kg, p = 0.495), whereas it significantly increased between baseline and 12 months in the EFV group (64.3 kg vs. 66.9 kg, p = 0.019). Cholesterol levels did not significantly increase between baseline and 12 months in either group. After adjustment, DTG use [MD −5.85, 95 % confidence interval (CI) −10.45, −1.24, p = 0.013] and baseline BW (MD 0.97, 95 % CI 0.79, 1.15, p < 0.001) were significantly associated with BW changes over time.

Conclusions

DTG-based ART was not significantly associated with increased BW and cholesterol levels compared with EFV-based ART in treatment-naïve Thai PLHIV.
背景:在treatment-naïve亚洲HIV感染者(PLHIV)中,关于dtg相关体重增加的数据有限。方法:分别对81例和100例PLHIV患者进行基于dtg和基于依非韦伦(EFV)的抗逆转录病毒治疗(ART)后6个月和12个月的体重和血脂变化进行回顾性研究。结果:在基线时,DTG组的平均体重(BW)(60.7 kg vs. 64.3 kg, p = 0.071)和平均胆固醇水平(172 mg/dL vs. 185 mg/dL, p = 0.029)低于EFV组。DTG组的平均体重在6个月[58.2 kg vs. 66.0 kg,平均差值(MD) -7.8, p = 0.005]和12个月(59.6 kg vs. 67.0 kg, MD -7.3, p = 0.008)时仍低于EFV组。DTG组的体重在基线和12个月之间没有显著变化(60.7 kg对59.6 kg, p = 0.495),而EFV组的体重在基线和12个月之间显著增加(64.3 kg对66.9 kg, p = 0.019)。在基线和12个月期间,两组的胆固醇水平都没有显著增加。调整后,DTG的使用[MD -5.85, 95 %置信区间(CI) -10.45, -1.24, p = 0.013]和基线体重(MD 0.97, 95 % CI 0.79, 1.15, p ]结论:在treatment-naïve泰国PLHIV患者中,与基于efv的ART相比,DTG为基础的ART与体重和胆固醇水平升高无显著相关。
{"title":"Effect of dolutegravir on weight changes and lipid profile compared with efavirenz in people living with HIV: A retrospective cohort study","authors":"Rachawit Setpakdee,&nbsp;Sasisopin Kiertiburanakul","doi":"10.1016/j.jiph.2024.102630","DOIUrl":"10.1016/j.jiph.2024.102630","url":null,"abstract":"<div><h3>Background</h3><div>There are limited data on DTG-associated weight gain among treatment-naïve Asian people living with HIV (PLHIV).</div></div><div><h3>Methods</h3><div>Eighty-one and 100 PLHIV initiating DTG-based and efavirenz (EFV)-based antiretroviral therapy (ART), respectively, were retrospectively investigated for weight changes and lipid profiles at 6 and 12 months after ART initiation.</div></div><div><h3>Results</h3><div>At baseline, the DTG group had a lower mean body weight (BW) (60.7 kg vs. 64.3 kg, p = 0.071) and lower mean cholesterol level (172 mg/dL vs. 185 mg/dL, p = 0.029) than the EFV group. Mean BW remained lower in the DTG group than in the EFV group at 6 [58.2 kg vs. 66.0 kg, mean difference (MD) −7.8, p = 0.005] and 12 (59.6 kg vs. 67.0 kg, MD −7.3, p = 0.008) months. BW did not significantly change between baseline and 12 months in the DTG group (60.7 kg vs. 59.6 kg, p = 0.495), whereas it significantly increased between baseline and 12 months in the EFV group (64.3 kg vs. 66.9 kg, p = 0.019). Cholesterol levels did not significantly increase between baseline and 12 months in either group. After adjustment, DTG use [MD −5.85, 95 % confidence interval (CI) −10.45, −1.24, p = 0.013] and baseline BW (MD 0.97, 95 % CI 0.79, 1.15, p &lt; 0.001) were significantly associated with BW changes over time.</div></div><div><h3>Conclusions</h3><div>DTG-based ART was not significantly associated with increased BW and cholesterol levels compared with EFV-based ART in treatment-naïve Thai PLHIV.</div></div>","PeriodicalId":16087,"journal":{"name":"Journal of Infection and Public Health","volume":"18 2","pages":"Article 102630"},"PeriodicalIF":4.7,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142950151","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial resistance and epidemiological patterns of Streptococcus pyogenes in Türkiye <s:1>基耶病毒中化脓性链球菌的耐药性及流行病学模式。
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2024.102633
Nihan Ünübol , Nese Caglayan , Sinan Cebeci , Yeşim Beşli , Banu Sancak , Neval Yurttutan Uyar , Siavosh Salmanzadeh Ahrabi , Masoud Alebouyeh , Tanıl Kocagöz

Background

Drug-resistant Group A beta-hemolytic streptococci remain significant infectious agents globally. This study investigated the major S. pyogenes strains responsible for infections in Türkiye and their susceptibility to beta-lactam and macrolide antibiotics.

Methods

We determined the minimum inhibitory concentration using the penicillin gradient test and performed emm typing and DNA fingerprinting via pulsed-field gel electrophoresis (PFGE) to analyze the clonal spread of 92 S. pyogenes strains isolated from two hospitals in Türkiye between 2020 and 2022.

Results

Our findings revealed the predominant S. pyogenes strains causing infections in the population and provided insights into the epidemiological relatedness of these drug-resistant strains. This study also evaluated the correlation between emm typing and PFGE in tracking S. pyogenes epidemiology. In this study, the current resistance patterns of S. pyogenes strains in Türkiye identified erythromycin resistance in a few strains, but no resistance to penicillin was detected.

Conclusions

This study revealed that emm types 1, 12 and 89 as S. pyogenes strain genotypes were responsible for epidemic infections in Türkiye. PFGE genotyping and emm typing were found to provide better phylogenetic classification in the investigation of S. pyogenes epidemiology.
背景:在全球范围内,耐药的A组溶血链球菌仍然是重要的感染性病原体。本研究调查了基耶病毒感染的主要化脓性葡萄球菌菌株及其对-内酰胺类和大环内酯类抗生素的敏感性。方法:采用青霉素梯度试验确定最低抑菌浓度,并采用脉冲场凝胶电泳(PFGE)进行emm分型和DNA指纹图谱分析2020 - 2022年在泰国两家医院分离的92株化脓性链球菌的克隆传播情况。结果:我们的发现揭示了在人群中引起感染的主要化脓性葡萄球菌菌株,并为这些耐药菌株的流行病学相关性提供了见解。本研究还评估了emm分型与PFGE在追踪化脓性链球菌流行病学中的相关性。在本研究中,猩红热杆菌中化脓性链球菌目前的耐药模式发现少数菌株对红霉素耐药,但未发现对青霉素耐药。结论:emm 1型、12型和89型为产化脓性链球菌基因型,是引起鼠疫流行的主要原因。PFGE基因分型和emm分型在化脓链球菌流行病学研究中提供了较好的系统发育分类。
{"title":"Antimicrobial resistance and epidemiological patterns of Streptococcus pyogenes in Türkiye","authors":"Nihan Ünübol ,&nbsp;Nese Caglayan ,&nbsp;Sinan Cebeci ,&nbsp;Yeşim Beşli ,&nbsp;Banu Sancak ,&nbsp;Neval Yurttutan Uyar ,&nbsp;Siavosh Salmanzadeh Ahrabi ,&nbsp;Masoud Alebouyeh ,&nbsp;Tanıl Kocagöz","doi":"10.1016/j.jiph.2024.102633","DOIUrl":"10.1016/j.jiph.2024.102633","url":null,"abstract":"<div><h3>Background</h3><div>Drug-resistant Group A beta-hemolytic streptococci remain significant infectious agents globally. This study investigated the major <em>S. pyogenes</em> strains responsible for infections in Türkiye and their susceptibility to beta-lactam and macrolide antibiotics.</div></div><div><h3>Methods</h3><div>We determined the minimum inhibitory concentration using the penicillin gradient test and performed <em>emm</em> typing and DNA fingerprinting via pulsed-field gel electrophoresis (PFGE) to analyze the clonal spread of 92 <em>S. pyogenes</em> strains isolated from two hospitals in Türkiye between 2020 and 2022.</div></div><div><h3>Results</h3><div>Our findings revealed the predominant <em>S. pyogenes</em> strains causing infections in the population and provided insights into the epidemiological relatedness of these drug-resistant strains. This study also evaluated the correlation between <em>emm ty</em>ping and PFGE in tracking <em>S. pyogenes</em> epidemiology. In this study, the current resistance patterns of <em>S. pyogenes</em> strains in Türkiye identified erythromycin resistance in a few strains, but no resistance to penicillin was detected.</div></div><div><h3>Conclusions</h3><div>This study revealed that <em>emm ty</em>pes 1, 12 and 89 as <em>S. pyogenes</em> strain genotypes were responsible for epidemic infections in Türkiye. PFGE genotyping and <em>emm ty</em>ping were found to provide better phylogenetic classification in the investigation of <em>S. pyogenes</em> epidemiology.</div></div>","PeriodicalId":16087,"journal":{"name":"Journal of Infection and Public Health","volume":"18 2","pages":"Article 102633"},"PeriodicalIF":4.7,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142927359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Emergence of a blaNDM-5-carrying extensively drug-resistant Enterobacter cloacae ST1718 in Saudi Arabia: Insights from comprehensive genome analysis 携带blandm -5的广泛耐药阴沟肠杆菌ST1718在沙特阿拉伯的出现:来自全面基因组分析的见解
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2024.102645
Ibrahim A. Al-Zahrani , Thamer M. Brek

Background

Patients with severe COVID-19 may require intensive care unit (ICU) admission to manage life-threatening complications. However, ICU admission is associated with an increased risk of acquiring nosocomial infections caused by multidrug-resistant (MDR) bacteria, particularly carbapenem-resistant Enterobacterale (CRE). Enterobacter cloacae complex (ECC), a group of closely related species including Enterobacter cloacae, is a common cause of healthcare-associated infections (HAIs).

Methods

The study conducted a comprehensive genomic analysis of an extensively drug-resistant (XDR) E. cloacae strain (ECloa-JZ71) isolated from the blood of a critically ill COVID-19 patient in Jazan, Saudi Arabia.

Results

ECloa-JZ71 exhibited resistance to multiple antimicrobial agents, except for amikacin, gentamycin, and fosfomycin. Whole-genome sequencing revealed that ECloa-JZ71 had a rarely reported sequence type, ST1718. Resistance to β-lactam antibiotics was primarily mediated by the genes blaCMH-3, blaTEM-1B, blaLAP-2, and blaNDM-5. The strain was found to harbor IncFIB(pECLA) and IncX3 plasmid replicons, with the latter encoding the blaNDM-5 gene. The IncX3 plasmid was identified as a significant contributor to the dissemination of the blaNDM-5 gene among Enterobacterale species The coexistence of blaNDM-5 and other carbapenem-hydrolyzing enzymes explains the reduced efficacy of β-lactam drugs in ECloa-JZ71. The coexistence of blaNDM-5 and other carbapenem-hydrolyzing enzymes explains the reduced efficacy of β-lactam drugs in ECloa-JZ71. The presence of specific virulence factors along with carbapenem resistance in ECloa-JZ71 may enhance its pathogenesis, complicating treatment and control efforts.

Conclusion

The findings highlight the need for monitoring the spread of multidrug-resistant clones, conducting molecular epidemiological studies, and implementing effective infection control measures to prevent the dissemination of antimicrobial resistance in healthcare settings.
背景:重症COVID-19患者可能需要入住重症监护病房(ICU)以处理危及生命的并发症。然而,ICU住院与多药耐药(MDR)细菌引起的院内感染风险增加有关,特别是碳青霉烯耐药肠杆菌(CRE)。阴沟肠杆菌复合体(ECC)是包括阴沟肠杆菌在内的一组密切相关的物种,是卫生保健相关感染(HAIs)的常见原因。方法:本研究对从沙特阿拉伯吉赞市一名COVID-19危重患者血液中分离的广泛耐药(XDR)阴沟肠杆菌(ECloa-JZ71)进行了全面的基因组分析。结果:ECloa-JZ71对除阿米卡星、庆大霉素和磷霉素外的多种抗菌药物均表现出耐药。全基因组测序结果显示,ECloa-JZ71具有罕见报道的序列类型ST1718。β-内酰胺类抗生素耐药主要由blaCMH-3、blacem - 1b、blaLAP-2和blaNDM-5基因介导。发现该菌株含有IncFIB(pECLA)和IncX3质粒复制子,后者编码blaNDM-5基因。IncX3质粒被认为是blaNDM-5基因在肠杆菌中传播的重要因素,blaNDM-5与其他碳青霉烯水解酶的共存解释了β-内酰胺类药物在ECloa-JZ71中疗效降低的原因。blaNDM-5与其他碳青霉烯水解酶的共存解释了β-内酰胺类药物在ECloa-JZ71中的疗效降低。ECloa-JZ71中特异性毒力因子的存在以及碳青霉烯类耐药性可能会增强其发病机制,使治疗和控制工作复杂化。结论:研究结果强调需要监测耐多药克隆的传播,开展分子流行病学研究,并实施有效的感染控制措施,以防止卫生保健机构中抗菌素耐药性的传播。
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引用次数: 0
Chronological trend of social contact patterns in Japan after the emergence of COVID-19 新冠肺炎发生后日本社会接触模式的时间趋势
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2024.102629
Hwichang Jeong , Sehyun Park , June Young Chun , Norio Ohmagari , Yongdai Kim , Shinya Tsuzuki

Background

The social contact data for Japan as of 2022 showed a substantially decreased number of contacts compared with before the COVID-19 pandemic. However, it is unclear whether social contact continues to be depressed following the end of countermeasures against the pandemic. There is also scarce evidence regarding the influence of influenza-like illnesses (ILIs) on social contacts in Japan. Therefore, this study examined whether the reduction in contact frequency during the pandemic was temporary or persists today and assessed the impact of ILIs on social mixing patterns.

Methods

We conducted online questionnaire surveys of individuals who experienced symptoms of ILIs periodically from 2022 to 2024 to compare the number of contacts per day during and after their illnesses. Contact matrices were obtained from the survey data. The impacts of the timing of the survey and the ILIs were examined using negative binomial regression analysis.

Results

Contact patterns were generally age-assortative, and the average contact numbers gradually increased from March 2022 to June 2024. Most recently, the median number of contacts per day during illness was 3 (interquartile range [IQR] 2–7) and then rose to 4.5 (IQR 2–11) after recovery. The earlier survey and ILIs showed a negative association with the frequency of social contacts.

Conclusion

The frequency of social contacts in Japan tended to rise compared with that in 2021 but has not yet reached pre-pandemic levels. Individuals tended to decrease their contacts when they had symptoms caused by ILIs.
背景:截至2022年,日本的社会接触数据显示,与新冠肺炎大流行前相比,接触人数大幅减少。然而,目前尚不清楚,在疫情防控措施结束后,社会接触是否会继续减少。在日本,关于流感样疾病(ILIs)对社会接触的影响的证据也很少。因此,本研究审查了大流行期间接触频率的减少是暂时的还是持续到今天,并评估了ILIs对社会混合模式的影响。方法:从2022年到2024年,我们对有ILIs症状的个体进行了定期的在线问卷调查,比较他们患病期间和患病后每天的接触次数。从调查数据中获得接触矩阵。使用负二项回归分析检验了调查时间和ILIs的影响。结果:2022年3月至2024年6月,接触方式基本呈年龄分类,平均接触次数逐渐增加。最近,患病期间每天接触人数中位数为3人(四分位数区间[IQR] 2-7),康复后上升至4.5人(IQR 2-11)。先前的调查和ili显示与社会接触频率呈负相关。结论:与2021年相比,日本社会接触频率有上升趋势,但尚未达到大流行前水平。当个体出现由ili引起的症状时,他们倾向于减少接触。
{"title":"Chronological trend of social contact patterns in Japan after the emergence of COVID-19","authors":"Hwichang Jeong ,&nbsp;Sehyun Park ,&nbsp;June Young Chun ,&nbsp;Norio Ohmagari ,&nbsp;Yongdai Kim ,&nbsp;Shinya Tsuzuki","doi":"10.1016/j.jiph.2024.102629","DOIUrl":"10.1016/j.jiph.2024.102629","url":null,"abstract":"<div><h3>Background</h3><div>The social contact data for Japan as of 2022 showed a substantially decreased number of contacts compared with before the COVID-19 pandemic. However, it is unclear whether social contact continues to be depressed following the end of countermeasures against the pandemic. There is also scarce evidence regarding the influence of influenza-like illnesses (ILIs) on social contacts in Japan. Therefore, this study examined whether the reduction in contact frequency during the pandemic was temporary or persists today and assessed the impact of ILIs on social mixing patterns.</div></div><div><h3>Methods</h3><div>We conducted online questionnaire surveys of individuals who experienced symptoms of ILIs periodically from 2022 to 2024 to compare the number of contacts per day during and after their illnesses. Contact matrices were obtained from the survey data. The impacts of the timing of the survey and the ILIs were examined using negative binomial regression analysis.</div></div><div><h3>Results</h3><div>Contact patterns were generally age-assortative, and the average contact numbers gradually increased from March 2022 to June 2024. Most recently, the median number of contacts per day during illness was 3 (interquartile range [IQR] 2–7) and then rose to 4.5 (IQR 2–11) after recovery. The earlier survey and ILIs showed a negative association with the frequency of social contacts.</div></div><div><h3>Conclusion</h3><div>The frequency of social contacts in Japan tended to rise compared with that in 2021 but has not yet reached pre-pandemic levels. Individuals tended to decrease their contacts when they had symptoms caused by ILIs.</div></div>","PeriodicalId":16087,"journal":{"name":"Journal of Infection and Public Health","volume":"18 2","pages":"Article 102629"},"PeriodicalIF":4.7,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142903289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CTX-M, SHV, TEM and VEB β-lactamases, and MCR-1 among multidrug-resistant Escherichia coli and Klebsiella isolates from environment near animal farms in Thailand 泰国动物养殖场附近环境中多重耐药大肠埃希菌和克雷伯菌分离株的CTX-M、SHV、TEM和VEB β-内酰胺酶以及MCR-1。
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2024.102624
Arpasiri Srisrattakarn , Bhanubong Saiboonjan , Patcharaporn Tippayawat , Sunpetch Angkititrakul , Aroonwadee Chanawong , Chanakan Pornchoo , Chokdee Smithkittipol , Aroonlug Lulitanond

Background

Currently, antimicrobial agents are widely used in both animals and agriculture, causing the crisis of multidrug-resistant (MDR) bacteria. In this study we surveyed for 4 important antimicrobial-resistant bacteria: extended-spectrum β-lactamase (ESBL)-producing Escherichia coli, Klebsiella pneumoniae and Salmonella spp., and methicillin-resistant Staphylococcus aureus (MRSA) from the environment around chicken and pig farms.

Methods

Forty-four soils, 44 water and 15 bootstrap samples were collected from upstream and downstream of the riverside close to 22 animal farms in 2020 (9 farms) and 2023 (13 farms). The samples were cultured in appropriate media and isolated colonies were further identified. Antimicrobial susceptibility and ESBL production were tested by disk diffusion method except for colistin susceptibility determined by broth disk elution test. Common resistance genes were tested by polymerase chain reaction (PCR) methods.

Results

A total of 123 E. coli (n = 59) and Klebsiella species (n = 64) were identified and 25 isolates of them were MDR; 21 and 4 isolates from the downstream and upstream areas respectively. In addition, 13 isolates were ESBL producers, of which 12 isolates were from the downstream area. The most common ESBL gene among both organisms was blaCTX-M, whereas colistin resistance gene, mcr-1, was found in 2 E. coli isolates. Salmonella spp. and MRSA were not isolated from any sample.

Conclusions

Antimicrobial-resistant bacteria were found in the environment around the animal farms especially from the downstream area, suggesting the urgent need of judicious use of antimicrobial agents in animal farms.
背景:目前,抗菌药物广泛应用于动物和农业,引起了多重耐药(MDR)细菌的危机。在这项研究中,我们调查了4种重要的抗微生物细菌:产β-内酰胺酶(ESBL)的大肠杆菌、肺炎克雷伯菌和沙门氏菌,以及鸡和猪场周围环境中的耐甲氧西林金黄色葡萄球菌(MRSA)。方法:分别于2020年(9个)和2023年(13个)在靠近22个动物养殖场的河滨上下游采集土壤样本44份、水体样本44份和自举样本15份。在适当的培养基中培养样品,并进一步鉴定分离菌落。除多粘菌素敏感性采用肉汤圆盘洗脱法外,其余采用纸片扩散法测定菌株的药敏和ESBL产量。采用聚合酶链反应(PCR)法检测常见耐药基因。结果:共检出大肠杆菌123株(n = 59)和克雷伯菌123株(n = 64),其中耐多药菌株25株;下游和上游地区分别有21株和4株分离株。另外,13株菌株为ESBL生产者,其中12株来自下游地区。两种细菌中最常见的ESBL基因是blaCTX-M,而在2株大肠杆菌中发现了耐粘菌素基因mcr-1。未检出沙门氏菌和MRSA。结论:畜禽养殖场周边环境中存在耐药菌,尤其是下游地区,畜禽养殖场应合理使用抗菌药物。
{"title":"CTX-M, SHV, TEM and VEB β-lactamases, and MCR-1 among multidrug-resistant Escherichia coli and Klebsiella isolates from environment near animal farms in Thailand","authors":"Arpasiri Srisrattakarn ,&nbsp;Bhanubong Saiboonjan ,&nbsp;Patcharaporn Tippayawat ,&nbsp;Sunpetch Angkititrakul ,&nbsp;Aroonwadee Chanawong ,&nbsp;Chanakan Pornchoo ,&nbsp;Chokdee Smithkittipol ,&nbsp;Aroonlug Lulitanond","doi":"10.1016/j.jiph.2024.102624","DOIUrl":"10.1016/j.jiph.2024.102624","url":null,"abstract":"<div><h3>Background</h3><div>Currently, antimicrobial agents are widely used in both animals and agriculture, causing the crisis of multidrug-resistant (MDR) bacteria. In this study we surveyed for 4 important antimicrobial-resistant bacteria: extended-spectrum β-lactamase (ESBL)-producing <em>Escherichia coli, Klebsiella pneumoniae</em> and <em>Salmonella</em> spp., and methicillin-resistant <em>Staphylococcus aureus</em> (MRSA) from the environment around chicken and pig farms.</div></div><div><h3>Methods</h3><div>Forty-four soils, 44 water and 15 bootstrap samples were collected from upstream and downstream of the riverside close to 22 animal farms in 2020 (9 farms) and 2023 (13 farms). The samples were cultured in appropriate media and isolated colonies were further identified. Antimicrobial susceptibility and ESBL production were tested by disk diffusion method except for colistin susceptibility determined by broth disk elution test. Common resistance genes were tested by polymerase chain reaction (PCR) methods.</div></div><div><h3>Results</h3><div>A total of 123 <em>E. coli</em> (n = 59) and <em>Klebsiella</em> species (n = 64) were identified and 25 isolates of them were MDR; 21 and 4 isolates from the downstream and upstream areas respectively. In addition, 13 isolates were ESBL producers, of which 12 isolates were from the downstream area. The most common ESBL gene among both organisms was <em>bla</em><sub>CTX-M</sub>, whereas colistin resistance gene, <em>mcr-1,</em> was found in 2 <em>E. coli</em> isolates. <em>Salmonella</em> spp. and MRSA were not isolated from any sample.</div></div><div><h3>Conclusions</h3><div>Antimicrobial-resistant bacteria were found in the environment around the animal farms especially from the downstream area, suggesting the urgent need of judicious use of antimicrobial agents in animal farms.</div></div>","PeriodicalId":16087,"journal":{"name":"Journal of Infection and Public Health","volume":"18 2","pages":"Article 102624"},"PeriodicalIF":4.7,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142909712","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Regional risk factors associated with adverse outcomes of COVID-19 infection among the older adult: A systematic review and meta-analysis 与老年人感染COVID-19不良后果相关的区域危险因素:系统综述和荟萃分析
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2024.102632
Olunike Rebecca Abodunrin, Mobolaji Timothy Olagunju, Xinyi Huang, Jianming Wang, Zhibin Hu, Chong Shen
The rapid global spread of Coronavirus Disease 2019 (COVID-19) has resulted in millions of infections and deaths, particularly impacting older adults. This study systematically analyzes risk factors reported in different geographical regions such as Asia and Europe that are associated with adverse outcomes in older adults with COVID-19. Following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, we searched five databases up to December 2023 and conducted meta-analyses of odds ratios for 27 risk factors reported in at least two studies using R software (version 4.3.2). Our meta-analysis identified 19 risk factors linked to adverse outcomes, with many of them common across regions, particularly in Asia and Europe. Key factors include old age (above 65 years), male gender, symptoms such as fever and dyspnea, and comorbidities like dementia, chronic obstructive pulmonary disease (COPD), chronic heart disease, hypertension, chronic kidney disease, and malnutrition. Laboratory biomarkers such as low oxygen saturation, thrombocytopenia, and elevated D-dimer were also associated with adverse outcomes. COVID-19 patients in Asia and Europe who are older adults, male, or have specific symptoms combined with underlying health conditions are at an increased risk of progressing to severe illness or mortality.
2019年冠状病毒病(COVID-19)在全球的迅速传播已导致数百万人感染和死亡,对老年人的影响尤其大。本研究系统分析了亚洲和欧洲等不同地理区域报告的与COVID-19老年人不良后果相关的风险因素。根据系统评价和荟萃分析的首选报告项目(PRISMA)指南,我们检索了截至2023年12月的5个数据库,并使用R软件(版本4.3.2)对至少两项研究中报告的27个危险因素的优势比进行了荟萃分析。我们的荟萃分析确定了19个与不良后果相关的风险因素,其中许多因素在各地区都很常见,尤其是在亚洲和欧洲。关键因素包括老年(65岁以上)、男性、发烧和呼吸困难等症状,以及痴呆、慢性阻塞性肺病(COPD)、慢性心脏病、高血压、慢性肾病和营养不良等合并症。实验室生物标志物如低氧饱和度、血小板减少症和d -二聚体升高也与不良结果相关。在亚洲和欧洲,老年人、男性或有特定症状并伴有潜在健康状况的COVID-19患者发展为严重疾病或死亡的风险增加。
{"title":"Regional risk factors associated with adverse outcomes of COVID-19 infection among the older adult: A systematic review and meta-analysis","authors":"Olunike Rebecca Abodunrin,&nbsp;Mobolaji Timothy Olagunju,&nbsp;Xinyi Huang,&nbsp;Jianming Wang,&nbsp;Zhibin Hu,&nbsp;Chong Shen","doi":"10.1016/j.jiph.2024.102632","DOIUrl":"10.1016/j.jiph.2024.102632","url":null,"abstract":"<div><div>The rapid global spread of Coronavirus Disease 2019 (COVID-19) has resulted in millions of infections and deaths, particularly impacting older adults. This study systematically analyzes risk factors reported in different geographical regions such as Asia and Europe that are associated with adverse outcomes in older adults with COVID-19. Following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, we searched five databases up to December 2023 and conducted meta-analyses of odds ratios for 27 risk factors reported in at least two studies using R software (version 4.3.2). Our meta-analysis identified 19 risk factors linked to adverse outcomes, with many of them common across regions, particularly in Asia and Europe. Key factors include old age (above 65 years), male gender, symptoms such as fever and dyspnea, and comorbidities like dementia, chronic obstructive pulmonary disease (COPD), chronic heart disease, hypertension, chronic kidney disease, and malnutrition. Laboratory biomarkers such as low oxygen saturation, thrombocytopenia, and elevated D-dimer were also associated with adverse outcomes. COVID-19 patients in Asia and Europe who are older adults, male, or have specific symptoms combined with underlying health conditions are at an increased risk of progressing to severe illness or mortality.</div></div>","PeriodicalId":16087,"journal":{"name":"Journal of Infection and Public Health","volume":"18 2","pages":"Article 102632"},"PeriodicalIF":4.7,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142927384","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Advancing the understanding of Naegleria fowleri: Global epidemiology, phylogenetic analysis, and strategies to combat a deadly pathogen
IF 4.7 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jiph.2025.102690
Awadh Alanazi , Sonia Younas , Hasan Ejaz , Muharib Alruwaili , Yasir Alruwaili , Bi Bi Zainab Mazhari , Muhammad Atif , Kashaf Junaid
Naegleria fowleri is a rare but deadly pathogen that has emerged as an important global public health concern. The pathogen induces primary amoebic meningoencephalitis (PAM), a rapidly progressive and almost always fatal life-threatening brain infection. The devastating impact of N. fowleri and the high mortality rate underscores a deeper understanding and the development of innovative strategies to tackle this issue. Despite various studies that have been conducted on N. fowleri, a comprehensive review that integrates recent findings and addresses critical gaps in understanding remains lacking. This review provides a detailed overview of N. fowleri epidemiology, transmission dynamics, phylogenetic diversity, state-of-the-art diagnostic techniques, therapeutic approaches, and preventive measures. We identified 488 PAM cases globally, reported since 1962, with the highest numbers in the US, Pakistan, and Australia. A phylogenetic analysis of 41 N. fowleri ITS-1, 5.8S, ITS-2 region-based sequences showed genotypic diversity, with genotypes II and III being the most prevalent in Asia, North America, and Europe. Effective approaches to preventing N. fowleri transmission include applying free chlorine to water in storage tanks, taking precautions while swimming, and performing ablution with sterilized water (e.g., boiled or distilled) while avoiding deep inhalation of water, especially in regions with high water contamination. This review highlights the global impact of N. fowleri, future surveillance strategies, prompt diagnosis, potential therapeutic options, and vaccine development to prevent PAM outbreaks. It highlights the importance of joint government and public health efforts to combat this deadly pathogen.
{"title":"Advancing the understanding of Naegleria fowleri: Global epidemiology, phylogenetic analysis, and strategies to combat a deadly pathogen","authors":"Awadh Alanazi ,&nbsp;Sonia Younas ,&nbsp;Hasan Ejaz ,&nbsp;Muharib Alruwaili ,&nbsp;Yasir Alruwaili ,&nbsp;Bi Bi Zainab Mazhari ,&nbsp;Muhammad Atif ,&nbsp;Kashaf Junaid","doi":"10.1016/j.jiph.2025.102690","DOIUrl":"10.1016/j.jiph.2025.102690","url":null,"abstract":"<div><div><em>Naegleria fowleri</em> is a rare but deadly pathogen that has emerged as an important global public health concern. The pathogen induces primary amoebic meningoencephalitis (PAM), a rapidly progressive and almost always fatal life-threatening brain infection. The devastating impact of <em>N. fowleri</em> and the high mortality rate underscores a deeper understanding and the development of innovative strategies to tackle this issue. Despite various studies that have been conducted on <em>N. fowleri</em>, a comprehensive review that integrates recent findings and addresses critical gaps in understanding remains lacking. This review provides a detailed overview of <em>N. fowleri</em> epidemiology, transmission dynamics, phylogenetic diversity, state-of-the-art diagnostic techniques, therapeutic approaches, and preventive measures. We identified 488 PAM cases globally, reported since 1962, with the highest numbers in the US, Pakistan, and Australia. A phylogenetic analysis of 41 <em>N. fowleri</em> ITS-1, 5.8S, ITS-2 region-based sequences showed genotypic diversity, with genotypes II and III being the most prevalent in Asia, North America, and Europe. Effective approaches to preventing <em>N. fowleri</em> transmission include applying free chlorine to water in storage tanks, taking precautions while swimming, and performing ablution with sterilized water (e.g., boiled or distilled) while avoiding deep inhalation of water, especially in regions with high water contamination. This review highlights the global impact of <em>N. fowleri</em>, future surveillance strategies, prompt diagnosis, potential therapeutic options, and vaccine development to prevent PAM outbreaks. It highlights the importance of joint government and public health efforts to combat this deadly pathogen.</div></div>","PeriodicalId":16087,"journal":{"name":"Journal of Infection and Public Health","volume":"18 4","pages":"Article 102690"},"PeriodicalIF":4.7,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143213621","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Infection and Public Health
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