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Circular genome of human bocavirus 1 associated with high load of viral DNA, positive antigen and increased risk of severe pneumonia in children 人类波卡病毒1型环状基因组与病毒DNA高负荷、抗原阳性和儿童重症肺炎风险增加相关
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-16 DOI: 10.1016/j.jiph.2026.103156
Kexiang Zhang , Ri De , Zeng Li , Yanpeng Xu , Zhenzhi Han , Runan Zhu , Yu Sun , Liping Jia , Dongmei Chen , Yutong Zhou , Qi Guo , Yao Yao , Xiaolin Ma , Shuang Liu , Chunmei Zhu , Dong Qu , Linqing Zhao

Background

Human bocavirus 1 (HBoV1) causes acute respiratory infections (ARIs) in children, but its diagnosis is complicated by prolonged viral shedding. There are indications that the detection of a circular genome in a clinical specimens may be associated with acute infection.

Methods

Respiratory specimens collected from pediatric patients with ARIs during January 2021 to July 2024 were screened by a duplex qPCR, which was developed to distinguish circular genome from total viral genomes and evaluated by nested PCR and antigen test. Clinical data were collected from patients with single HBoV1 infection to reveal the association of circular genome with ARIs and the severity of pneumonia.

Results

Among 520 specimens positive for HBoV1 DNA, 206 (39.61 %) were positive for circular genomes as determined by duplex qPCR, with the median load of total genomes 1010.08 (IQR 109.26, 1010.62) copies/mL significantly higher than 107.81 (IQR 106.88, 108.60) copies/mL in the circular genome negative group (p < 0.0001). In the antigen-positive group, the positive rate for circular genomes was 78.57 % (44/56), significantly higher than 34.29 % (108/315) observed in the antigen-negative group. Among patients single positive for HBoV1, the circular genome-positive group (n = 106) showed more severe clinical manifestations and required more intensive treatment. Logistic regression analysis identified the circular genome as a strong independent risk factor for severe pneumonia (OR = 6.38, AUC = 0.82).

Conclusion

Circular genome of HBoV1 associated with high load of viral DNA, positive antigen and severe pneumonia in children may serve as a biomarker for acute HBoV1 infection and severe pneumonia.
人类bocavavirus 1 (HBoV1)在儿童中引起急性呼吸道感染(ARIs),但由于病毒长期脱落,其诊断变得复杂。有迹象表明,在临床标本中检测到环状基因组可能与急性感染有关。方法对2021年1月至2024年7月收集的急性呼吸道感染患儿呼吸道标本,采用区分环状基因组和总病毒基因组的双工qPCR方法进行筛选,并采用巢式PCR和抗原检测进行评价。收集单例HBoV1感染患者的临床数据,以揭示环基因组与ARIs和肺炎严重程度的关联。结果520份HBoV1 DNA阳性标本中,环状基因组阳性206份(39.61 %),总基因组中位数负荷1010.08 (IQR 109.26, 1010.62) copies/mL显著高于环状基因组阴性组的107.81 (IQR 106.88, 108.60) copies/mL (p <; 0.0001)。抗原阳性组环状基因组阳性率为78.57 %(44/56),显著高于抗原阴性组34.29 %(108/315)。在HBoV1单一阳性患者中,环状基因组阳性组(n = 106)临床表现更严重,需要更强化的治疗。Logistic回归分析发现,环状基因组是严重肺炎的一个强大的独立危险因素(OR = 6.38, AUC = 0.82)。结论儿童HBoV1环状基因组与病毒DNA高负荷、抗原阳性和重症肺炎相关,可作为急性HBoV1感染和重症肺炎的生物标志物。
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引用次数: 0
Digital twin of Mycobacterium tuberculosis infection: Integrating immune dynamics and pathogen adaptation for precision therapy 结核分枝杆菌感染的数字双胞胎:整合免疫动力学和病原体适应精确治疗。
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-15 DOI: 10.1016/j.jiph.2026.103154
Ruqaiyyah Siddiqui , Naveed Ahmed Khan
Mycobacterium tuberculosis remains one of the world’s most persistent pathogens, responsible for over a million deaths each year despite effective drugs and decades of research. Disease progression varies widely among individuals, reflecting interactions between pathogen, physiology, host immunity, and pharmacological response. We propose a digital twin framework for tuberculosis that integrates clinical, immunological, and pharmacokinetic data into a continuously adaptive computational model. The twin would simulate host-pathogen dynamics from granuloma formation to systemic immune regulation, linking these processes with individualised drug exposure and treatment response. By forecasting outcomes and identifying early indicators of relapse or resistance, such a system could guide precision therapy and accelerate discovery of host-directed interventions. The tuberculosis digital twin thus represents a bridge between infection biology, computation, and clinical translation, presenting an evolving model capable of transforming how this ancient disease is understood and managed. However, translation will require further longitudinal clinical and immunological datasets and systematic validation of model predictions in real-world treatment settings.
尽管有有效的药物和数十年的研究,但结核分枝杆菌仍然是世界上最顽固的病原体之一,每年造成100多万人死亡。疾病进展因人而异,反映了病原体、生理、宿主免疫和药理反应之间的相互作用。我们提出了一个结核病的数字孪生框架,将临床、免疫学和药代动力学数据集成到一个连续自适应的计算模型中。双胞胎将模拟从肉芽肿形成到全身免疫调节的宿主-病原体动力学,将这些过程与个体化药物暴露和治疗反应联系起来。通过预测结果和识别复发或耐药性的早期指标,这样的系统可以指导精确治疗并加速发现宿主导向的干预措施。因此,结核病数字双胞胎代表了感染生物学、计算和临床转化之间的桥梁,呈现了一个能够改变这种古老疾病的理解和管理方式的不断发展的模型。然而,翻译将需要进一步的纵向临床和免疫学数据集,以及在现实世界治疗环境中对模型预测的系统验证。
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引用次数: 0
The role of changes in lactate dehydrogenase (LDH) levels in predicting COVID-19 severity and mortality: A biomarker analysis 乳酸脱氢酶(LDH)水平变化在预测COVID-19严重程度和死亡率中的作用:一项生物标志物分析
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-15 DOI: 10.1016/j.jiph.2026.103153
Seyed Hassan Saadat , Behzad Einollahi , Hadi Norouzi , Mohammad Farjami , Nematollah Jonaidi Jafari , Shahla Afsharpeyman , Fahime Shahjooie , Ali Bahrami Far , Kiavash Hushmandi

Background

Lactate dehydrogenase (LDH) has emerged as a potential biomarker for COVID-19 severity, but the diagnostic value of its dynamic changes (ΔLDH) remains unclear. This study aimed to determine the predictive value of ΔLDH for clinical outcomes in hospitalized patients with COVID-19.

Methods

We performed a retrospective cohort study of 5635 adults with confirmed COVID-19, analyzing LDH measurements. The patients were stratified by ΔLDH quartiles (Q1-Q4). Multivariable logistic regression was used to assess the associations with mortality and ICU admission, while ROC analysis was used to determine the predictive performance.

Results

A U-shaped relationship was observed, with both extreme reductions (Q1: ΔLDH ≤ -196 U/L) and elevations (Q4: ΔLDH ≥ 108 U/L) predicting adverse outcomes. Q4 patients had a higher risk of mortality (aOR = 6.72, 95 % CI: 5.31–8.51) and a higher risk of ICU admission (aOR = 6.63, 95 % CI: 5.26–8.36) compared to Q1. ΔLDH revealed excellent discrimination for mortality (AUC = 0.78) with an optimal cutoff at 181.5 U/L (sensitivity = 66.7 %, specificity = 88.9 %).

Conclusion

ΔLDH is a powerful, independent predictor of COVID-19 severity, revealing a novel U-shaped risk pattern. The 181.5 U/L threshold offers clinically actionable guidance for risk stratification. These findings support the incorporation of serial LDH monitoring into COVID-19 management protocols.
背景:乳酸脱氢酶(LDH)已成为COVID-19严重程度的潜在生物标志物,但其动态变化的诊断价值尚不清楚(ΔLDH)。本研究旨在确定ΔLDH对COVID-19住院患者临床结局的预测价值。方法:对5635例确诊COVID-19的成年人进行回顾性队列研究,分析LDH测量值。患者按ΔLDH四分位数(Q1-Q4)分层。采用多变量logistic回归评估与死亡率和ICU入院的关系,采用ROC分析确定预测效果。结果:观察到U型关系,极端降低(Q1: ΔLDH≤ -196 U/L)和升高(Q4: ΔLDH≥108 U/L)预测不良结局。Q4患者的死亡风险(aOR = 6.72, 95 % CI: 5.31-8.51)和ICU入院风险(aOR = 6.63, 95 % CI: 5.26-8.36)高于Q1。ΔLDH对死亡率有很好的鉴别(AUC = 0.78),最佳截止值为181.5 U/L(敏感性= 66.7 %,特异性= 88.9 %)。结论:ΔLDH是一个强大的、独立的COVID-19严重程度预测因子,揭示了一种新的u型风险模式。181.5 U/L阈值为风险分层提供了临床可操作的指导。这些发现支持将LDH连续监测纳入COVID-19管理方案。
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引用次数: 0
A structured-data algorithm for semiautomated surveillance of surgical site infection after colorectal surgery: A diagnostic accuracy study 结直肠术后手术部位感染半自动监测的结构化数据算法:诊断准确性研究
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-15 DOI: 10.1016/j.jiph.2026.103151
Daniel Casanova-Portoles , Josep M. Badia , Carlos G. Forero , Néstor Sánchez-Martínez , Manel Romero , Toni Alonso-Solís , Enric Limón , Miquel Pujol , Joan Sancho

Background

Manual surveillance of surgical site infections (SSIs) after colorectal surgery is resource-intensive, limiting scalability. Semiautomated algorithms based on structured electronic health record (EHR) data may maintain high case-finding sensitivity while reducing workload.

Methods

A retrospective diagnostic-accuracy study was conducted in a teaching hospital participating in a nationwide SSI surveillance programme. All elective colorectal procedures performed between January 2010 and December 2023 were included. SSIs were classified according to CDC-NHSN/ECDC criteria. Eight binary EHR-derived “alerts” were combined into a composite rule (any alert positive). Manual surveillance served as the reference standard. Performance was assessed overall, by SSI depth (superficial, deep, organ/space), and by procedure type (colon vs rectal). Discrimination (AUC), sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) were calculated with 95 % confidence intervals (CIs).

Results

A total of 1213 patients (1085 colon; 128 rectal) were included. The overall SSI incidence was 11.2 % (3.1 % superficial, 1.2 % deep, 6.8 % organ/space). The composite alert achieved an AUC of 0.859 (95 % CI 0.838–0.878) for any SSI, with sensitivity 0.721, specificity 0.876, PPV 0.424, and NPV 0.961. At this operating point, 19 % of procedures would be flagged for manual verification, corresponding to an estimated 81 % reduction in full chart reviews. Discrimination was highest for organ/space infections (AUC 0.919; sensitivity 0.831; specificity 0.911). Performance for deep SSI was intermediate (AUC 0.805), and for superficial SSI, more limited (AUC 0.571). Sensitivity was higher for colon surgery (AUC 0.853) and specificity higher for rectal surgery (AUC 0.881).

Conclusions

The structured-data algorithm demonstrated strong overall discrimination and excellent performance for organ/space infections, supporting the feasibility of semiautomated surveillance without compromising detection quality. External and prospective validation, definition of diagnostic safety thresholds, and workload-reduction analyses are required to optimise implementation. Exploration of NLP add-ons may be considered where resources permit. ClinicalTrials.gov: NCT07130656.
背景:人工监测结直肠手术后手术部位感染(ssi)是资源密集型的,限制了可扩展性。基于结构化电子健康记录(EHR)数据的半自动算法可以在减少工作量的同时保持较高的病例查找灵敏度。方法在参与全国SSI监测项目的某教学医院进行回顾性诊断准确性研究。包括2010年1月至2023年12月期间进行的所有择期结直肠手术。根据CDC-NHSN/ECDC标准对ssi进行分类。8个由ehr衍生的二元“警报”被合并成一个复合规则(任何阳性警报)。人工监测作为参考标准。通过SSI深度(浅表、深部、器官/空间)和手术类型(结肠和直肠)对性能进行总体评估。以95% %置信区间(ci)计算辨别力(AUC)、敏感性、特异性、阳性预测值(PPV)和阴性预测值(NPV)。结果共纳入1213例患者,其中结肠1085例,直肠128例。SSI的总发生率为11.2 %(3.1 %浅表,1.2 %深部,6.8 %器官/间隙)。对于任何SSI,复合预警的AUC为0.859(95 % CI 0.838-0.878),敏感性0.721,特异性0.876,PPV 0.424, NPV 0.961。在这个操作点,19% %的程序将被标记为手动验证,对应于完整图表审查的估计减少81% %。脏器/空间感染的鉴别率最高(AUC 0.919,敏感性0.831,特异性0.911)。深度SSI的性能为中等(AUC为0.805),浅表SSI的性能更有限(AUC为0.571)。结肠手术的敏感性较高(AUC 0.853),直肠手术的特异性较高(AUC 0.881)。结论结构化数据算法对器官/空间感染具有较强的整体判别能力和优异的检测性能,支持在不影响检测质量的情况下实现半自动监测的可行性。需要外部和前瞻性验证、诊断安全阈值的定义以及工作量减少分析来优化实施。在资源允许的情况下,可以考虑对NLP附加组件进行勘探。ClinicalTrials.gov: NCT07130656。
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引用次数: 0
Post-exposure prophylaxis with favipiravir among household close contacts to confirmed COVID-19 cases: A cluster-randomized trial (PEPfavi) COVID-19确诊病例家庭密切接触者的法匹拉韦暴露后预防:一项聚类随机试验(PEPfavi)
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-14 DOI: 10.1016/j.jiph.2026.103150
Taweegrit Siripongboonsitti , Teerapat Ungtrakul , Kriangkrai Tawinprai , Krongkwan Niemsorn , Kunsuda Punjachaipornpol , Worrawat Sangwipasnapaporn , Natcha Wattanapokasilp , Marisa Muadchimkaew , Saowanee Wongpatcharawarakul , Kamonwan Soonklang , Nithi Mahanonda

Background

Household transmission of SARS-CoV-2 remains a key driver of community spread, with secondary attack rates in Thai households reaching approximately 50 %. There is limited evidence supporting the efficacy of antiviral post-exposure prophylaxis (PEP) in this context.

Methods

The phase 2/3, open-label, (1:1) cluster-randomized controlled trial in Thailand, 168 household close contacts from 76 index cases were enrolled to receive either favipiravir-PEP (FPV-PEP) (1600–2000 mg/day for 7 days) or usual care. The efficacy of FPV-PEP was investigated in preventing SARS-CoV-2 infection after contact with index cases.

Results

The incidence of confirmed SARS-CoV-2 infection was lower in the FPV-PEP group than in the usual care group (7.32 % vs. 14.47 %), although the difference was not statistically significant. A trend toward fewer early positive rapid diagnostic test results on day 3 was observed in the FPV-PEP group. Symptom development was less frequent among FPV-PEP recipients, with fewer cases of fever, rhinorrhea, and myalgia. A significantly higher probability of remaining asymptomatic and delayed symptom onset was observed in the FPV-PEP group. No participants developed severe COVID-19 or required hospitalization.

Conclusion

FPV-PEP was associated with a lower incidence of fever, rhinorrhea, and myalgia among household contacts. While a reduction in secondary transmission was observed, it did not reach statistical significance. Further large-scale studies are warranted to clarify its role in preventing household transmission.
SARS-CoV-2的家庭传播仍然是社区传播的主要驱动因素,泰国家庭的二次发病率约为50% %。在这种情况下,支持抗病毒暴露后预防(PEP)有效性的证据有限。方法在泰国进行2/3期、开放标签、(1:1)聚类随机对照试验,选取76例家庭密切接触者中的168例,分别接受favipirvir - pep (FPV-PEP) (1600 ~ 2000 mg/d,连用7 d)或常规护理。观察FPV-PEP在接触指示病例后预防SARS-CoV-2感染的效果。结果FPV-PEP组确诊SARS-CoV-2感染发生率低于常规护理组(7.32 %比14.47 %),但差异无统计学意义。在FPV-PEP组中,观察到第3天早期阳性快速诊断试验结果较少的趋势。FPV-PEP受者的症状发展较少,发热、鼻流和肌痛的病例较少。在FPV-PEP组中观察到明显更高的剩余无症状和延迟症状发作的可能性。没有参与者出现严重的COVID-19或需要住院治疗。结论fpv - pep与家庭接触者发热、流鼻、肌痛发生率较低有关。虽然观察到二次传播的减少,但没有达到统计学意义。有必要进一步进行大规模研究,以阐明其在预防家庭传播方面的作用。
{"title":"Post-exposure prophylaxis with favipiravir among household close contacts to confirmed COVID-19 cases: A cluster-randomized trial (PEPfavi)","authors":"Taweegrit Siripongboonsitti ,&nbsp;Teerapat Ungtrakul ,&nbsp;Kriangkrai Tawinprai ,&nbsp;Krongkwan Niemsorn ,&nbsp;Kunsuda Punjachaipornpol ,&nbsp;Worrawat Sangwipasnapaporn ,&nbsp;Natcha Wattanapokasilp ,&nbsp;Marisa Muadchimkaew ,&nbsp;Saowanee Wongpatcharawarakul ,&nbsp;Kamonwan Soonklang ,&nbsp;Nithi Mahanonda","doi":"10.1016/j.jiph.2026.103150","DOIUrl":"10.1016/j.jiph.2026.103150","url":null,"abstract":"<div><h3>Background</h3><div>Household transmission of SARS-CoV-2 remains a key driver of community spread, with secondary attack rates in Thai households reaching approximately 50 %. There is limited evidence supporting the efficacy of antiviral post-exposure prophylaxis (PEP) in this context.</div></div><div><h3>Methods</h3><div>The phase 2/3, open-label, (1:1) cluster-randomized controlled trial in Thailand, 168 household close contacts from 76 index cases were enrolled to receive either favipiravir-PEP (FPV-PEP) (1600–2000 mg/day for 7 days) or usual care. The efficacy of FPV-PEP was investigated in preventing SARS-CoV-2 infection after contact with index cases.</div></div><div><h3>Results</h3><div>The incidence of confirmed SARS-CoV-2 infection was lower in the FPV-PEP group than in the usual care group (7.32 % vs. 14.47 %), although the difference was not statistically significant. A trend toward fewer early positive rapid diagnostic test results on day 3 was observed in the FPV-PEP group. Symptom development was less frequent among FPV-PEP recipients, with fewer cases of fever, rhinorrhea, and myalgia. A significantly higher probability of remaining asymptomatic and delayed symptom onset was observed in the FPV-PEP group. No participants developed severe COVID-19 or required hospitalization.</div></div><div><h3>Conclusion</h3><div>FPV-PEP was associated with a lower incidence of fever, rhinorrhea, and myalgia among household contacts. While a reduction in secondary transmission was observed, it did not reach statistical significance. Further large-scale studies are warranted to clarify its role in preventing household transmission.</div></div>","PeriodicalId":16087,"journal":{"name":"Journal of Infection and Public Health","volume":"19 4","pages":"Article 103150"},"PeriodicalIF":4.0,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146102486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The emergence of JN.1 variant resurgent COVID-19 wave in India and South Asia is a global public health concern 在印度和南亚出现的新型冠状病毒1型变体再次出现是一个全球性的公共卫生问题
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-13 DOI: 10.1016/j.jiph.2026.103146
Najibah Nasrin , Asfia Hasan Mumu , Abir Hasan Pranto , Md. Rabiul Islam
The emergence of the JN.1 variant of SARS-CoV-2 has heightened global health concerns. Here, we aimed to evaluate viral characteristics, epidemiology, transmissibility, infectivity, immune evasion, effectiveness of current antiviral therapies, immunization options, genomic surveillance and public awareness against the stealthy JN.1. We searched across key databases to identify recent insights regarding JN.1 variant. This review provides a comprehensive overview of the virological characteristics and public health implications. Early genomic analyses reveal notable mutations in the spike protein, which may enhance viral transmissibility and immune escape. The findings indicate JN.1 to exhibit greater infectivity and enhanced ability to circumvent immune defenses attributable to one mutation identified as L455S. Public health agencies worldwide are enhancing monitoring, genomic surveillance, data sharing, revising containment strategies, promoting booster vaccination campaigns Furthermore, it is imperative to promote public adherence and global collaboration in encouraging the practice of preventive strategies to mitigate potential threat posed by JN.1.
SARS-CoV-2的JN.1变种的出现加剧了全球卫生问题。在这里,我们的目的是评估病毒的特征、流行病学、传播性、传染性、免疫逃避、当前抗病毒治疗的有效性、免疫选择、基因组监测和公众对隐形JN.1的认识。我们搜索了关键数据库,以确定关于JN.1变体的最新见解。这篇综述提供了病毒学特征和公共卫生影响的全面概述。早期基因组分析揭示了刺突蛋白的显著突变,这可能增强病毒的传播性和免疫逃逸。研究结果表明,JN.1表现出更强的传染性,并且由于一个被鉴定为L455S的突变而增强了规避免疫防御的能力。世界各地的公共卫生机构正在加强监测、基因组监测、数据共享、修订遏制战略、促进加强疫苗接种运动。此外,必须促进公众遵守和全球合作,鼓励采取预防战略,以减轻新冠病毒1造成的潜在威胁。
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引用次数: 0
Serological and molecular investigation of suspected chickenpox cases from India, 2016–2025 2016-2025年印度水痘疑似病例血清学和分子调查
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-12 DOI: 10.1016/j.jiph.2026.103147
Sunil R. Vaidya, Sarang S. Kamble, Madhukar B. Kamble, Roben P. George, Pankaj G. Pandey, Atul M. Walimbe

Background

Varicella, commonly known as chickenpox is a neglected disease in India with numerous outbreaks reported in the last decade. Unfortunately, varicella vaccine is not included in India’s Universal Immunization Program (UIP), and active surveillance is not in place. Investigation of suspected varicella cases from various Indian regions was done to understand disease burden and molecular epidemiology.

Methods

Between 2016 and 2025, 195 clinical cases from suspected chickenpox cases were referred for virological investigation from five States and one Union Territory of India. Samples were analyzed for Varicella-Zoster Virus (VZV) using IgM-EIA and/or conventional PCR. Virus isolation was attempted on Vero, MRC-5, and WI-38 cell lines. PCR-positive products were sequenced for phylogenetic analysis to identify circulating VZV clades.

Results

Of the 195 suspected cases, 159 (81.53 %) were confirmed by serological or molecular methods. Majority of the cases (n = 152, 77.94 %) occurred in individuals under 18 years of age, with higher incidence among males (n = 119) than females (n = 76). Of 58 diverse clinical specimens, 43 showed VZV DNA. Sequencing of representative PCR products showed circulation of VZV clade-5 in 29 cases and clade-9 in a single case. Unfortunately, attempts at VZV isolation were not successful.

Conclusion

The study confirms a high laboratory-confirmed rate of varicella among suspected cases in India, with children being the most affected. Molecular data identified VZV clade-5 as primary circulating genotype. These findings highlight a significant burden of chickenpox and provide molecular evidence to support inclusion of the varicella vaccine in India’s Universal Immunization Program.
水痘,俗称水痘,在印度是一种被忽视的疾病,在过去十年中报道了多次暴发。不幸的是,水痘疫苗不包括在印度的普遍免疫规划(UIP)中,也没有开展主动监测。对来自印度不同地区的水痘疑似病例进行调查,以了解疾病负担和分子流行病学。方法对2016 - 2025年来自印度5个邦和1个联邦直辖区的195例疑似水痘临床病例进行病毒学调查。采用IgM-EIA和/或常规PCR对样品进行水痘-带状疱疹病毒(VZV)检测。在Vero、MRC-5和WI-38细胞系上尝试分离病毒。pcr阳性产物测序用于系统发育分析,以确定循环VZV支系。结果195例疑似病例中,经血清学或分子检测确诊159例(81.53 %)。大多数病例(n = 152,77.94 %)发生在18岁以下的个体,男性发病率(n = 119)高于女性(n = 76)。在58份不同的临床标本中,43份显示VZV DNA。代表性PCR产物测序结果显示,29例病例中存在VZV分支枝-5,1例病例中存在分支枝-9。不幸的是,隔离VZV的尝试没有成功。结论:该研究证实,印度水痘疑似病例的实验室确诊率很高,儿童受影响最大。分子数据鉴定VZV clade-5为主要的循环基因型。这些发现突出了水痘的重大负担,并提供了分子证据,支持将水痘疫苗纳入印度的普遍免疫规划。
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引用次数: 0
Corrigendum to “Clustering analysis of sexual behavioral patterns and risk of sexually transmitted infections in Chinese men who have sex with men” [J Infect Public Health 18 (2025), 102786] 中国男男性接触者性行为模式与性传播感染风险的聚类分析[J].中华卫生杂志,2018,27(2):481 - 481。
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-10 DOI: 10.1016/j.jiph.2026.103129
Bingyang She , Yiming Liu , Siqi Lin , Fang Lu , Yi Liu , Jiajun Sun , Gaixia Li , Yawu Hu , Shu Su , Lei Zhang
{"title":"Corrigendum to “Clustering analysis of sexual behavioral patterns and risk of sexually transmitted infections in Chinese men who have sex with men” [J Infect Public Health 18 (2025), 102786]","authors":"Bingyang She ,&nbsp;Yiming Liu ,&nbsp;Siqi Lin ,&nbsp;Fang Lu ,&nbsp;Yi Liu ,&nbsp;Jiajun Sun ,&nbsp;Gaixia Li ,&nbsp;Yawu Hu ,&nbsp;Shu Su ,&nbsp;Lei Zhang","doi":"10.1016/j.jiph.2026.103129","DOIUrl":"10.1016/j.jiph.2026.103129","url":null,"abstract":"","PeriodicalId":16087,"journal":{"name":"Journal of Infection and Public Health","volume":"19 3","pages":"Article 103129"},"PeriodicalIF":4.0,"publicationDate":"2026-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145952305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Time-series evaluation of an ED-based syndromic alarm system before and during the COVID-19 pandemic 在COVID-19大流行之前和期间对基于ed的综合征警报系统进行时间序列评估
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-09 DOI: 10.1016/j.jiph.2026.103149
Jeongmin Moon , Youn Young Choi , Hye Sook Min , Ho Kyung Sung , Kyung-Shin Lee

Objective

To evaluate the performance and limitations of an emergency department (ED)-based syndromic surveillance (SyS) model for detecting respiratory infection outbreaks in Korea, across distinct age groups and epidemiological contexts before and during the COVID-19 pandemic.

Methods

We conducted a retrospective time-series analysis using nationwide data from Level 1 and 2 EDs between January 2017 and December 2022. Syndromic visits were defined as those with fever (≥38.0 °C) or respiratory symptoms. Age-stratified autoregressive integrated moving average (ARIMA) models were trained on data from January 2017–December 2018 and January 2020–December 2021 to forecast syndromic ED visits in January–December 2019 and January–December 2022, respectively. Alarms were triggered when observed visit counts exceeded both the model’s 95th percentile prediction interval and historical day-of-week thresholds. Alarm performance was assessed against ED discharge diagnoses of respiratory infectious diseases.

Results

The system performed well under stable pre-pandemic conditions, particularly among children aged 0–4 years (3-day alarm sensitivity: 1.000; specificity: 0.964), and moderately among adults aged 65 years and older. In contrast, model performance deteriorated in 2022 under pandemic conditions, especially among adults aged 20–64 years, with alarm sensitivity dropping below 0.300. The decline was driven by persistently elevated syndromic activity during the Omicron wave, which overwhelmed the static thresholds of the ARIMA models.

Conclusion

ED-based SyS can offer timely and specific early warning for seasonal respiratory outbreaks, particularly in pediatric populations. However, its utility is limited during sustained pandemic waves. Future surveillance systems must incorporate adaptive models, dynamic thresholds, and multiple data streams to remain effective under evolving epidemiological baselines.
目的评价基于急诊科(ED)的综合征监测(SyS)模型在COVID-19大流行之前和期间检测韩国不同年龄组和流行病学背景下呼吸道感染暴发的性能和局限性。方法采用2017年1月至2022年12月期间全国一级和二级医疗机构的数据进行回顾性时间序列分析。综合征就诊定义为有发热(≥38.0°C)或呼吸道症状的患者。使用年龄分层自回归综合移动平均(ARIMA)模型对2017年1月至2018年12月和2020年1月至2021年12月的数据进行训练,分别预测2019年1月至12月和2022年1月至12月的综合征性ED就诊情况。当观察到的访问量超过模型的第95个百分位数预测区间和历史的周数阈值时,警报就会触发。以急诊科的呼吸道传染病出院诊断为对照,评价报警效果。结果该系统在大流行前的稳定条件下表现良好,特别是在0-4岁儿童中(3天警报灵敏度为1.000,特异性为0.964),在65岁及以上的成年人中表现中等。相比之下,2022年在大流行条件下,模型性能下降,特别是在20-64岁的成年人中,警报灵敏度降至0.300以下。下降的原因是在欧米克隆波期间持续升高的综合征活动,超过了ARIMA模型的静态阈值。结论基于数据的系统可为季节性呼吸道疫情提供及时、有针对性的预警,特别是在儿科人群中。然而,在持续的大流行期间,其效用有限。未来的监测系统必须结合自适应模型、动态阈值和多种数据流,以便在不断变化的流行病学基线下保持有效性。
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引用次数: 0
Epidemiology of hepatitis C in Alberta, Saskatchewan, and Manitoba compared to Canada, 1980–2023 1980-2023年艾伯塔省、萨斯喀彻温省和马尼托巴省丙型肝炎流行病学与加拿大比较
IF 4 3区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-09 DOI: 10.1016/j.jiph.2026.103148
Zipporah Gitau , Camilo Suarez-Ariza , Maria Arango-Uribe , Mariana Herrera-Diaz , Camila Oda , Angela Copete , Rotem Keynan , Ameeta E. Singh , Stuart Skinner , Cara Spence , Lauren J. MacKenzie , Ken Kasper , Laurie Ireland , Jared Bullard , Lucelly Lopez , Diana Marin , Margaret Haworth-Brockman , Zulma Vanessa Rueda , Yoav Keynan

Background

Canada aims to eliminate hepatitis C (HCV) by 2030. While national rates have dropped, regional disparities persist. In 2021, Manitoba had the highest new HCV rates, and Saskatchewan's rates were double the national average. This study aimed to describe the incidence and risk factors associated with HCV infections in Alberta, Saskatchewan, and Manitoba, compared to Canada,1980–2023.

Methods

This ecological study used publicly available government reports from Alberta, Saskatchewan, Manitoba, and Canada (1980–2023) on HCV cases and rates by year and disaggregated by sex (female/male), age, ethnicity, province, sexual orientation (gay/bisexual men who have sex with men, heterosexual), and risk factors (injection drug use, blood products, and history of incarceration).

Results

Since becoming nationally notifiable in 1991, HCV incidence in Canada has declined, but Saskatchewan has reported consistently rates above the national average since 2005. Manitoba's incidence rose, peaking in 2018, with the highest national rate in 2021 (42.8/100,000), while Alberta had the lowest rate (14.5/100,00 people). Males represented 61 % of HCV cases in Canada in 2022, but the sex gap is narrowing, particularly in the Prairies. Most cases in Canada occur among individuals aged 40–59, but younger groups (20–39) are increasingly affected in the Prairies, particularly females of childbearing age and males aged 30–39. Injection drug use was the leading risk factor in Saskatchewan and Manitoba.

Conclusion

Canada is on a downward trend in rates of HCV; however, Manitoba and Saskatchewan have higher rates, possibly due to syndemics of substance use, which are leading to increased rates of HIV and STBBIs. A collaborative effort in surveillance, testing, treatment, and prevention of HCV across the three provinces is necessary.
加拿大旨在到2030年消除丙型肝炎(HCV)。虽然全国的比率有所下降,但地区差异依然存在。2021年,曼尼托巴省的新丙肝病毒感染率最高,萨斯喀彻温省的新丙肝病毒感染率是全国平均水平的两倍。本研究旨在描述1980-2023年与加拿大相比,阿尔伯塔省、萨斯喀彻温省和马尼托巴省HCV感染的发病率和相关危险因素。方法本生态研究使用了阿尔伯塔省、萨斯喀彻温省、马尼托巴省和加拿大(1980-2023年)公开的政府报告,按性别(女性/男性)、年龄、种族、省份、性取向(男同性恋/双性恋男性、异性恋)和危险因素(注射药物使用、血液制品和监禁史)分类,并按年统计了HCV病例和发病率。结果自1991年成为全国报告以来,加拿大的HCV发病率有所下降,但萨斯喀彻温省自2005年以来报告的发病率一直高于全国平均水平。曼尼托巴省的发病率上升,在2018年达到顶峰,2021年全国发病率最高(42.8/10万人),而阿尔伯塔省的发病率最低(14.5/10万人)。2022年,男性占加拿大HCV病例的61% %,但性别差距正在缩小,特别是在大草原地区。在加拿大,大多数病例发生在40-59岁的人群中,但在草原地区,越来越多的年轻群体(20-39岁)受到影响,尤其是育龄女性和30-39岁的男性。注射吸毒是萨斯喀彻温省和马尼托巴省的主要危险因素。结论加拿大HCV感染率呈下降趋势;然而,马尼托巴省和萨斯喀彻温省的比率较高,可能是由于药物使用综合症,这导致艾滋病毒和性传染感染的比率上升。这三个省必须在监测、检测、治疗和预防丙肝病毒方面开展合作。
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Journal of Infection and Public Health
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