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Meta-analytical evidence for frequency-dependent selection across the tree of life 生命树上频率依赖性选择的元分析证据。
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-08-02 DOI: 10.1111/ele.14477
Miguel Gómez-Llano, Ronald D. Bassar, Erik I. Svensson, Simon P. Tye, Adam M. Siepielski

Explaining the maintenance of genetic variation in fitness-related traits within populations is a fundamental challenge in ecology and evolutionary biology. Frequency-dependent selection (FDS) is one mechanism that can maintain such variation, especially when selection favours rare variants (negative FDS). However, our general knowledge about the occurrence of FDS, its strength and direction remain fragmented, limiting general inferences about this important evolutionary process. We systematically reviewed the published literature on FDS and assembled a database of 747 effect sizes from 101 studies to analyse the occurrence, strength, and direction of FDS, and the factors that could explain heterogeneity in FDS. Using a meta-analysis, we found that overall, FDS is more commonly negative, although not significantly when accounting for phylogeny. An analysis of absolute values of effect sizes, however, revealed the widespread occurrence of modest FDS. However, negative FDS was only significant in laboratory experiments and non-significant in mesocosms and field-based studies. Moreover, negative FDS was stronger in studies measuring fecundity and involving resource competition over studies using other fitness components or focused on other ecological interactions. Our study unveils key general patterns of FDS and points in future promising research directions that can help us understand a long-standing fundamental problem in evolutionary biology and its consequences for demography and ecological dynamics.

解释种群内与适生性相关性状的遗传变异的维持是生态学和进化生物学的一项基本挑战。频率依赖性选择(FDS)是维持这种变异的一种机制,尤其是当选择有利于稀有变异(负FDS)时。然而,我们对频率依赖性选择的发生、其强度和方向的一般认识仍然是零散的,从而限制了对这一重要进化过程的一般推断。我们系统地回顾了已发表的有关 FDS 的文献,并建立了一个包含 101 项研究的 747 个效应大小的数据库,以分析 FDS 的发生、强度和方向,以及可解释 FDS 异质性的因素。通过荟萃分析,我们发现总体而言,FDS 多为阴性,尽管在考虑系统发育时并不明显。然而,对效应大小绝对值的分析表明,适度的 FDS 也普遍存在。然而,负的 FDS 仅在实验室实验中显著,而在中置培养箱和实地研究中并不显著。此外,在测量繁殖力和涉及资源竞争的研究中,负的 FDS 比使用其他适合度成分或关注其他生态相互作用的研究更强。我们的研究揭示了 FDS 的关键一般模式,并指出了未来有希望的研究方向,这些方向可以帮助我们理解进化生物学中一个长期存在的基本问题及其对人口学和生态动力学的影响。
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引用次数: 0
Reconstructing 120 years of climate change impacts on Joshua tree flowering 重建 120 年气候变化对约书亚树开花的影响。
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-08-02 DOI: 10.1111/ele.14478
Jeremy B. Yoder, Ana Karina Andrade, Lesley A. DeFalco, Todd C. Esque, Colin J. Carlson, Daniel F. Shryock, Ray Yeager, Christopher I. Smith

Quantifying how global change impacts wild populations remains challenging, especially for species poorly represented by systematic datasets. Here, we infer climate change effects on masting by Joshua trees (Yucca brevifolia and Y. jaegeriana), keystone perennials of the Mojave Desert, from 15 years of crowdsourced observations. We annotated phenophase in 10,212 geo-referenced images of Joshua trees on the iNaturalist crowdsourcing platform, and used them to train machine learning models predicting flowering from annual weather records. Hindcasting to 1900 with a trained model successfully recovers flowering events in independent historical records and reveals a slightly rising frequency of conditions supporting flowering since the early 20th Century. This reflects increased variation in annual precipitation, which drives masting events in wet years—but also increasing temperatures and drought stress, which may have net negative impacts on recruitment. Our findings reaffirm the value of crowdsourcing for understanding climate change impacts on biodiversity.

量化全球变化对野生种群的影响仍然具有挑战性,尤其是对于系统数据集代表性较差的物种。在这里,我们通过 15 年的众包观测,推断气候变化对莫哈韦沙漠多年生植物约书亚树(Yucca brevifolia 和 Y. jaegeriana)植被的影响。我们注释了 iNaturalist 众包平台上 10,212 张约书亚树地理参照图像中的物候期,并利用这些图像来训练根据年度天气记录预测开花的机器学习模型。利用训练好的模型对 1900 年进行后向预测,成功恢复了独立历史记录中的开花事件,并发现自 20 世纪初以来,支持开花的条件频率略有上升。这反映了年降水量变化的增加,它推动了潮湿年份的开花事件,但同时也反映了温度和干旱压力的增加,这可能会对招花产生净负面影响。我们的研究结果再次证明了众包对于了解气候变化对生物多样性影响的价值。
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引用次数: 0
Unfolding the dynamics of ecosystems undergoing alternating wet-dry transitional states 揭示干湿交替过渡状态下生态系统的动态。
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-08-02 DOI: 10.1111/ele.14488
Rebeca Arias-Real, Manuel Delgado-Baquerizo, Sergi Sabater, Cayetano Gutiérrez-Cánovas, Enrique Valencia, Gregorio Aragón, Yolanda Cantón, Thibault Datry, Paolo Giordani, Nagore G. Medina, Asunción de los Ríos, Anna M. Romaní, Bettina Weber, Pilar Hurtado

A significant fraction of Earth's ecosystems undergoes periodic wet-dry alternating transitional states. These globally distributed water-driven transitional ecosystems, such as intermittent rivers and coastal shorelines, have traditionally been studied as two distinct entities, whereas they constitute a single, interconnected meta-ecosystem. This has resulted in a poor conceptual and empirical understanding of water-driven transitional ecosystems. Here, we develop a conceptual framework that places the temporal availability of water as the core driver of biodiversity and functional patterns of transitional ecosystems at the global scale. Biological covers (e.g., aquatic biofilms and biocrusts) serve as an excellent model system thriving in both aquatic and terrestrial states, where their succession underscores the intricate interplay between these two states. The duration, frequency, and rate of change of wet-dry cycles impose distinct plausible scenarios where different types of biological covers can occur depending on their desiccation/hydration resistance traits. This implies that the distinct eco-evolutionary potential of biological covers, represented by their trait profiles, would support different functions while maintaining similar multifunctionality levels. By embracing multiple alternating transitional states as interconnected entities, our approach can help to better understand and manage global change impacts on biodiversity and multifunctionality in water-driven transitional ecosystems, while providing new avenues for interdisciplinary studies.

地球上有相当一部分生态系统会经历周期性的干湿交替过渡状态。这些分布在全球的水驱动过渡生态系统,如间歇性河流和沿海海岸线,传统上一直被作为两个不同的实体来研究,而实际上它们构成了一个单一的、相互关联的元生态系统。这导致人们对水驱动过渡生态系统的概念和实证认识不足。在此,我们建立了一个概念框架,将水的时间可用性作为全球范围内过渡生态系统生物多样性和功能模式的核心驱动力。生物覆盖物(如水生生物膜和生物簇)是在水生和陆生两种状态下都能茁壮成长的绝佳模型系统,它们的演替凸显了这两种状态之间错综复杂的相互作用。干湿周期的持续时间、频率和变化率为不同类型的生物覆盖物提供了不同的可能情况,这些生物覆盖物的类型取决于其抗干燥/抗缺水特性。这意味着,生物覆盖物的特征所代表的不同生态进化潜力将支持不同的功能,同时保持相似的多功能性水平。通过将多种交替过渡状态视为相互关联的实体,我们的方法有助于更好地理解和管理全球变化对水驱动过渡生态系统的生物多样性和多功能性的影响,同时为跨学科研究提供了新的途径。
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引用次数: 0
The interaction between warming and enrichment accelerates food-web simplification in freshwater systems 变暖与富集之间的相互作用加速了淡水系统中食物网的简化。
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-08-02 DOI: 10.1111/ele.14480
Willem Bonnaffé, Alain Danet, Camille Leclerc, Victor Frossard, Eric Edeline, Arnaud Sentis

Nutrient enrichment and climate warming threaten freshwater systems. Metabolic theory and the paradox of enrichment predict that both stressors independently can lead to simpler food-webs having fewer nodes, shorter food-chains and lower connectance, but cancel each other's effects when simultaneously present. Yet, these theoretical predictions remain untested in complex natural systems. We inferred the food-web structure of 256 lakes and 373 streams from standardized fish community samplings in France. Contrary to theoretical predictions, we found that warming shortens fish food-chain length and that this effect was magnified in enriched streams and lakes. Additionally, lakes experiencing enrichment exhibit lower connectance in their fish food-webs. Our study suggests that warming and enrichment interact to magnify food-web simplification in nature, raising further concerns about the fate of freshwater systems as climate change effects will dramatically increase in the coming decades.

营养富集和气候变暖威胁着淡水系统。新陈代谢理论和富集悖论预测,这两种压力因素单独存在时,会导致食物网更简单,节点更少,食物链更短,连通性更低,但同时存在时,会相互抵消对方的影响。然而,这些理论预测仍未在复杂的自然系统中得到验证。我们通过对法国256个湖泊和373条溪流的标准化鱼类群落取样,推断出了它们的食物网结构。与理论预测相反,我们发现气候变暖会缩短鱼类食物链的长度,而且这种影响在富集的溪流和湖泊中会被放大。此外,富营养化的湖泊鱼类食物网的连通性较低。我们的研究表明,气候变暖和富营养化相互作用,放大了自然界中食物网的简化程度,这进一步引起了人们对淡水系统命运的担忧,因为气候变化的影响将在未来几十年急剧增加。
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引用次数: 0
Identifying and explaining resilience in ecological networks 识别和解释生态网络中的复原力。
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-08-01 DOI: 10.1111/ele.14484
Cailan Jeynes-Smith, Michael Bode, Robyn P. Araujo

Resilient ecological systems are more likely to persist and function in the Anthropocene. Current methods for estimating an ecosystem's resilience rely on accurately parameterized ecosystem models, which is a significant empirical challenge. In this paper, we adapt tools from biochemical kinetics to identify ecological networks that exhibit ‘structural resilience’, a strong form of resilience that is solely a property of the network structure and is independent of model parameters. We undertake an exhaustive search for structural resilience across all three-species ecological networks, under a generalized Lotka-Volterra modelling framework. Out of 20,000 possible network structures, approximately 2% display structural resilience. The properties of these networks provide important insights into the mechanisms that could promote resilience in ecosystems, provide new theoretical avenues for qualitative modelling approaches and provide a foundation for identifying robust forms of ecological resilience in large, realistic ecological networks.

具有复原力的生态系统更有可能在人类世持续存在并发挥作用。目前估算生态系统复原力的方法依赖于精确参数化的生态系统模型,这是一项重大的经验挑战。在本文中,我们利用生化动力学工具来识别表现出 "结构复原力 "的生态网络,这是一种强大的复原力形式,完全是网络结构的属性,与模型参数无关。我们在广义洛特卡-伏特拉模型框架下,对所有三物种生态网络的结构复原力进行了详尽的搜索。在 20,000 种可能的网络结构中,约有 2% 显示出结构复原力。这些网络的特性为我们提供了关于生态系统恢复力促进机制的重要见解,为定性建模方法提供了新的理论途径,并为在大型、现实的生态网络中识别稳健的生态恢复力形式奠定了基础。
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引用次数: 0
Interspecific competition shapes bird species' distributions along tropical precipitation gradients 种间竞争决定了鸟类物种在热带降水梯度上的分布。
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-07-31 DOI: 10.1111/ele.14487
Benjamin G. Freeman, Eliot T. Miller, Matthew Strimas-Mackey

The hypothesis that species' ranges are limited by interspecific competition has motivated decades of debate, but a general answer remains elusive. Here we test this hypothesis for lowland tropical birds by examining species' precipitation niche breadths. We focus on precipitation because it—not temperature—is the dominant climate variable that shapes the biota of the lowland tropics. We used 3.6 million fine-scale citizen science records from eBird to measure species' precipitation niche breadths in 19 different regions across the globe. Consistent with the predictions of the interspecific competition hypothesis, multiple lines of evidence show that species have narrower precipitation niches in regions with more species. This means species inhabit more specialized precipitation niches in species-rich regions. We predict this niche specialization should make tropical species in high diversity regions disproportionately vulnerable to changes in precipitation regimes; preliminary empirical evidence is consistent with this prediction.

物种的分布范围受到种间竞争的限制,这一假说引发了数十年的争论,但普遍的答案仍然难以确定。在这里,我们通过研究物种的降水生态位广度来验证低地热带鸟类的这一假设。我们将重点放在降水上,因为降水而不是温度是影响低地热带生物群系的主要气候变量。我们利用来自 eBird 的 360 万条精细尺度的公民科学记录,测量了全球 19 个不同地区物种的降水生态位广度。与种间竞争假说的预测一致,多种证据表明,在物种较多的地区,物种的降水壁龛较窄。这意味着在物种丰富的地区,物种栖息的降水壁龛更为专一。我们预测,这种生态位特化会使高多样性地区的热带物种更容易受到降水机制变化的影响;初步的经验证据与这一预测一致。
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引用次数: 0
Cover Image, Volume 27, Issue 5 封面图片,第 27 卷第 5 期
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-07-30 DOI: 10.1111/ele.14255

The cover image is based on the Letter Diversity inhibits foliar fungal diseases in grasslands: Potential mechanisms and temperature dependence by Peng Zhang et al., https://doi.org/10.1111/ele.14435.

封面图片来自张鹏等人撰写的《多样性抑制草地叶面真菌病:潜在机制与温度依赖性》,张鹏等著,https://doi.org/10.1111/ele.14435.
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引用次数: 0
Mechanisms of coexistence: Exploring species sorting and character displacement in woody plants to alleviate belowground competition 共存的机制:探索木本植物的物种分类和特性迁移,以缓解地下竞争。
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-07-29 DOI: 10.1111/ele.14489
Stavros D. Veresoglou, Jingjing Xi, Josep Peñuelas

Rarely do we observe competitive exclusion within plant communities, even though plants compete for a limited pool of resources. Thus, our understanding of the mechanisms sustaining plant biodiversity might be limited. In this study, we explore two common ecological strategies, species sorting and character displacement, that promote coexistence by reducing competition. We assess the degree to which woody plants may implement these two strategies to lower belowground competition for nutrients which occurs via nutritional (mostly mycorrhizal) mutualisms. First, we compile data on plant traits and the mycorrhizal association state of woody angiosperms using a global inventory of indigenous flora. Our analysis reveals that species in locations with high mycorrhizal diversity exhibit distinct mean values in leaf area and wood density based on their mycorrhizal type, indicating species sorting. Second, we reanalyse a large dataset on leaf area to demonstrate that in areas with high mycorrhizal diversity, trees maintain divergent leaf area values, showcasing character displacement. Character displacement among plants is considered rare, making our observation significant. In summary, our study uncovers a rare occurrence of character displacement and identifies a common mechanism employed by plants to alleviate competition, shedding light on the complexities of plant coexistence in diverse ecosystems.

我们很少观察到植物群落中的竞争排斥现象,即使植物在争夺有限的资源。因此,我们对维持植物生物多样性机制的了解可能是有限的。在本研究中,我们探讨了两种常见的生态策略,即物种分类和特性置换,它们通过减少竞争来促进共存。我们评估了木本植物实施这两种策略的程度,以降低通过营养(主要是菌根)互惠关系发生的地下养分竞争。首先,我们利用全球本土植物区系清单汇编了有关木本被子植物的植物性状和菌根结合状态的数据。我们的分析表明,在菌根多样性较高的地区,不同菌根类型的物种在叶面积和木质密度上表现出不同的平均值,这表明了物种的分类。其次,我们重新分析了一个关于叶面积的大型数据集,证明在菌根多样性高的地区,树木的叶面积值保持不同,显示出特征位移。植物间的特征位移被认为是罕见的,因此我们的观察结果意义重大。总之,我们的研究发现了一种罕见的特性置换现象,并确定了植物缓解竞争的一种共同机制,从而揭示了植物在不同生态系统中共存的复杂性。
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引用次数: 0
Food web context modifies predator foraging and weakens trophic interaction strength 食物网环境改变了捕食者的觅食行为,削弱了营养相互作用的强度。
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-07-26 DOI: 10.1111/ele.14475
Kimberley D. Lemmen, Frank Pennekamp

Trophic interaction modifications (TIM) are widespread in natural systems and occur when a third species indirectly alters the strength of a trophic interaction. Past studies have focused on documenting the existence and magnitude of TIMs; however, the underlying processes and long-term consequences remain elusive. To address this gap, we experimentally quantified the density-dependent effect of a third species on a predator's functional response. We conducted short-term experiments with ciliate communities composed of a predator, prey and non-consumable ‘modifier’ species. In both communities, increasing modifier density weakened the trophic interaction strength, due to a negative effect on the predator's space clearance rate. Simulated long-term dynamics indicate quantitative differences between models that account for TIMs or include only pairwise interactions. Our study demonstrates that TIMs are important to understand and predict community dynamics and highlights the need to move beyond focal species pairs to understand the consequences of species interactions in communities.

营养互作修饰(TIM)广泛存在于自然系统中,当第三物种间接改变营养互作的强度时就会发生。过去的研究主要集中于记录营养互作修饰的存在和程度;然而,其基本过程和长期后果仍然难以捉摸。为了填补这一空白,我们通过实验量化了第三物种对捕食者功能反应的密度依赖效应。我们在由捕食者、猎物和非消耗性 "修饰 "物种组成的纤毛虫群落中进行了短期实验。在这两个群落中,调节剂密度的增加削弱了营养相互作用的强度,这是因为调节剂对捕食者的空间清除率产生了负面影响。模拟的长期动态结果表明,考虑到营养互作的模型与只包括成对互作的模型之间存在数量上的差异。我们的研究表明,TIMs 对于理解和预测群落动力学非常重要,并强调了超越焦点物种对来理解群落中物种相互作用后果的必要性。
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引用次数: 0
Correction to ‘Life history mediates the trade-offs among different components of demographic resilience’ 对 "生活史介导人口复原力不同组成部分之间的权衡 "的更正。
IF 7.6 1区 环境科学与生态学 Q1 ECOLOGY Pub Date : 2024-07-22 DOI: 10.1111/ele.14468

Capdevila P, Stott I, Cant J, Beger M, Rowlands G, Grace M, Salguero-Gómez R. (2022) Life history mediates the trade-offs among different components of demographic resilience. Ecology Letters, 25(6), 1566–1579. https://doi.org/10.1111/ele.14004

The authors note a mistake in the calculation of resistance in the methods section, which alters the interpretation of some of the results. In the manuscript, we applied a correction to calculation of resistance (ρ_1$$ {underset{_}{rho}}_1 $$) in Equation (3) by subtracting the first step attenuation from 1 (1 − ρ_1$$ {underset{_}{rho}}_1 $$). Such subtraction in the formula was an error, and the correct calculation should simply be ρ_1$$ {underset{_}{rho}}_1 $$ where values close to 1 correspond to high resistance and 0 to low resistance.

In Figure 2 of the original manuscript, we showed that the phylogenetic signal for resistance was 0.48 ± 0.26 (mean ± SE) in animals and 0.02 ± 0.04 in plants. When applying the correct calculation of resistance the phylogenetic signal remains virtually unaltered, with values of 0.45 ± 0.25 and 0.03 ± 0.04, respectively.

In Figure 3 of the original manuscript, we showed that resistance and recovery time were positively associated in animals and slightly, negatively associated in plants. Also, resistance and compensation were positively associated in animals and plants. When applying the correct calculation of resistance, the same associations hold, but the correlation values are inverted. That is, resistance and recovery time are negatively correlated in animals (Figure 3a) and positively correlated in plants (Figure 3d), while resistance and compensation are negatively correlated for both animals (Figure 3d) and plants (Figure 3e).

In F

Capdevila P, Stott I, Cant J, Beger M, Rowlands G, Grace M, Salguero-Gómez R. (2022) Life history mediates the trade-offs among different components of demographic resilience.Ecology Letters, 25(6), 1566-1579. https://doi.org/10.1111/ele.14004The 作者指出,方法部分的抗性计算有误,改变了一些结果的解释。在手稿中,我们对公式(3)中的阻力计算(ρ _ 1 $$ {underset{_}{rho}}_1 $$)进行了修正,从 1 中减去了第一步衰减(1 - ρ _ 1 $$ {underset{_}{rho}}_1 $$)。公式中的这种减法是错误的,正确的计算应该是 ρ _ 1 $$ {underset{_}{rho}}_1 $$,其中接近 1 的值对应于高抗性,0 对应于低抗性。在原稿的图 2 中,我们表明抗性的系统发生信号在动物中为 0.48 ± 0.26(平均值 ± SE),在植物中为 0.02 ± 0.04。在原稿的图 3 中,我们发现抗性和恢复时间在动物中呈正相关,而在植物中呈轻微的负相关。此外,动物和植物的抗性和补偿也呈正相关。当采用正确的抗性计算方法时,同样的相关性依然存在,只是相关值倒置了。也就是说,抗性与恢复时间在动物中呈负相关(图 3a),在植物中呈正相关(图 3d),而抗性与补偿在动物(图 3d)和植物(图 3e)中均呈负相关。我们还表明,在植物和动物中,抗性与生殖产量呈正相关。在采用正确的抗性计算方法时,我们再次发现这些关联是成立的,但自然地,它们是相反的(图 4)。动物的抗逆性与世代时间呈正相关,而植物的抗逆性与世代时间呈负相关(图 4b),植物和动物的抗逆性与生殖产量呈负相关(图 4e)。当采用正确的抗逆性计算方法时,模拟种群与自然种群在抗逆性与生命史特征的关联方面仍然存在差异。在最初的补充分析中,我们发现动物和植物的抗逆性与身体尺寸无关,这些相关性的斜率没有明显的趋势。在原始补充材料的图 S3 中,我们发现抗性与 Raunkiær 生命形式没有任何明显的关联。在原始补充材料的图 S4 中,我们发现不同保护状态的物种在补偿、抵抗力和恢复时间方面存在很大差异(图 S4)。这些结果保持不变,但阻力轴发生了逆转(图 S4,中间面板)。
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引用次数: 0
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