Prashant I Bhandari, Reza Shekasteband, Tong-Geon Lee
The first consensus genetic map in fresh-market tomato (Solanum lycopersicum) was constructed, combining genetic recombination data from two biparental F2 segregating populations derived from four different fresh-market tomatoes. Each F2 population was nominated by different academic tomato breeding programs located in major fresh-market tomato-producing areas of the United States, and chromosome-wide variation in recombination rates was observed between tomato populations based on the origin of their breeding programs. A consensus map constructed using 335 common single nucleotide polymorphism (SNP) sites found in both populations spanned 737.3 cM across 12 tomato chromosomes, with chromosome 2 containing more than 40% of the total SNPs and chromosomes 4, 5, 7, and 10 together representing less than 10% of the SNPs. There was a high degree of collinearity between the genetic and physical positions of those 335 SNP markers. The integration of 6553 SNP sites that were detected in either of the two populations with 335 common sites resulted in an extended consensus genetic map. The total length of the extended map was estimated to be 1997.9 cM, which was compatible with a previous estimate for large-fruited fresh-market tomato. A linkage panel for fresh-market tomato was also established using the combined dataset of the consensus map of 335 SNP loci and 73 SNP-genotyped core fresh-market tomatoes. An empirical genetic mapping study of the tomato brachytic trait using the linkage panel demonstrated the value of the consensus map and linkage panel for tomato research. The allelic information in the linkage panel will serve as a basis for SNP marker implementation, such as genotyping platforms and genomic association map, in tomato.
{"title":"A Consensus Genetic Map and Linkage Panel for Fresh-market Tomato","authors":"Prashant I Bhandari, Reza Shekasteband, Tong-Geon Lee","doi":"10.21273/jashs05110-21","DOIUrl":"https://doi.org/10.21273/jashs05110-21","url":null,"abstract":"The first consensus genetic map in fresh-market tomato (Solanum lycopersicum) was constructed, combining genetic recombination data from two biparental F2 segregating populations derived from four different fresh-market tomatoes. Each F2 population was nominated by different academic tomato breeding programs located in major fresh-market tomato-producing areas of the United States, and chromosome-wide variation in recombination rates was observed between tomato populations based on the origin of their breeding programs. A consensus map constructed using 335 common single nucleotide polymorphism (SNP) sites found in both populations spanned 737.3 cM across 12 tomato chromosomes, with chromosome 2 containing more than 40% of the total SNPs and chromosomes 4, 5, 7, and 10 together representing less than 10% of the SNPs. There was a high degree of collinearity between the genetic and physical positions of those 335 SNP markers. The integration of 6553 SNP sites that were detected in either of the two populations with 335 common sites resulted in an extended consensus genetic map. The total length of the extended map was estimated to be 1997.9 cM, which was compatible with a previous estimate for large-fruited fresh-market tomato. A linkage panel for fresh-market tomato was also established using the combined dataset of the consensus map of 335 SNP loci and 73 SNP-genotyped core fresh-market tomatoes. An empirical genetic mapping study of the tomato brachytic trait using the linkage panel demonstrated the value of the consensus map and linkage panel for tomato research. The allelic information in the linkage panel will serve as a basis for SNP marker implementation, such as genotyping platforms and genomic association map, in tomato.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47528256","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. J. Talcott Stewart, T. Boylston, L. Wilson, W. Graves
Many members of the citrus family (Rutaceae) are valued for the aromatic compounds emitted by their flowers. Ptelea species are unusually cold-hardy members of the Rutaceae, but conflicting descriptions of the fragrance of their unisexual flowers may discourage the use of these trees. We analyzed floral volatiles and human response to these chemicals to test the hypothesis that the fragrance of staminate and pistillate flowers of these species differs. Gas chromatography and mass spectrometry showed that most volatile chemicals emitted by flowers of Ptelea trifoliata and Ptelea crenulata are monoterpenes, sesquiterpenes, and esters. Most volatiles were emitted from flowers of both sexes, but ethyl benzoate and estragole were emitted only from pistillate flowers. When concentrations of aromatics differed between sexes, they were higher for pistillate flowers, except for cis-3-hexenyl butanoate and an unidentified terpene. For P. crenulata and P. trifoliata, respectively, 81% and 77% of survey responses were from volunteers who liked the fragrance. Panelists most frequently described the scent of flowers of P. crenulata of both sexes with the words citrus, lime, and sweet. Panelists distinguished between pistillate and staminate flowers of P. trifoliata, describing the odor of pistillate flowers most frequently with the words damp-earthy, spicy, and sweet; staminate flowers were perceived as light, fresh, grassy, and pleasant. This work represents the first analysis of floral volatiles of P. crenulata and resolves conflicting prior reports regarding the floral fragrance of P. trifoliata. We conclude that differences among people rather than the sex of flowers account for conflicting prior reports of floral fragrance. The scents of flowers of P. crenulata and P. trifoliata appeal to most people and are horticultural assets of these trees.
{"title":"Floral Aromatics of Ptelea: Chemical Identification and Human Response","authors":"A. J. Talcott Stewart, T. Boylston, L. Wilson, W. Graves","doi":"10.21273/jashs05119-21","DOIUrl":"https://doi.org/10.21273/jashs05119-21","url":null,"abstract":"Many members of the citrus family (Rutaceae) are valued for the aromatic compounds emitted by their flowers. Ptelea species are unusually cold-hardy members of the Rutaceae, but conflicting descriptions of the fragrance of their unisexual flowers may discourage the use of these trees. We analyzed floral volatiles and human response to these chemicals to test the hypothesis that the fragrance of staminate and pistillate flowers of these species differs. Gas chromatography and mass spectrometry showed that most volatile chemicals emitted by flowers of Ptelea trifoliata and Ptelea crenulata are monoterpenes, sesquiterpenes, and esters. Most volatiles were emitted from flowers of both sexes, but ethyl benzoate and estragole were emitted only from pistillate flowers. When concentrations of aromatics differed between sexes, they were higher for pistillate flowers, except for cis-3-hexenyl butanoate and an unidentified terpene. For P. crenulata and P. trifoliata, respectively, 81% and 77% of survey responses were from volunteers who liked the fragrance. Panelists most frequently described the scent of flowers of P. crenulata of both sexes with the words citrus, lime, and sweet. Panelists distinguished between pistillate and staminate flowers of P. trifoliata, describing the odor of pistillate flowers most frequently with the words damp-earthy, spicy, and sweet; staminate flowers were perceived as light, fresh, grassy, and pleasant. This work represents the first analysis of floral volatiles of P. crenulata and resolves conflicting prior reports regarding the floral fragrance of P. trifoliata. We conclude that differences among people rather than the sex of flowers account for conflicting prior reports of floral fragrance. The scents of flowers of P. crenulata and P. trifoliata appeal to most people and are horticultural assets of these trees.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49290243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jian Li, Jessica Chitwood-Brown, Gurleen Kaur, J. Labate, G. Vallad, Tong-Geon Lee, S. Hutton
Fusarium wilt of tomato (Solanum lycopersicum), caused by fungal pathogen Fusarium oxysporum f. sp. lycopersici (Fol), is one of the most important diseases in tomato production. Three races of the pathogen are described, and race-specific resistance genes have been applied in commercial tomato cultivars for controlling the disease. Race 3 (Fol3) threatens tomato production in many regions around the world, and novel resistance resources could expand the diversity and durability of Fol resistance. The wild tomato species, Solanum pennellii, is reported to harbor broad resistance to Fol and was the source of two known Fol3 resistance genes. In this study, we evaluated 42 S. pennellii accessions for resistance to each fusarium wilt race. F1 plants, developed from crossing each accession with the Fol3 susceptible line ‘Suncoast’, were evaluated for Fol3 resistance, and BC1F1 plants were screened to determine the likelihood that Fol3 resistance was based on a novel locus (loci). Nearly all accessions showed resistance to Fol3, and many accessions were resistant to all races. Evaluation of F1 plants indicated a dominant resistance effect to Fol3 from most accessions. Genetic analysis indicated 24 accessions are expected to contain one or more novel Fol3 resistance loci other than an allele near the I-3 locus. To investigate genetic structure of the S. pennellii accessions used in this study, we genotyped all 42 accessions using genotyping by sequencing. Approximately 20% of the single nucleotide polymorphism (SNP) loci were heterozygous across accessions, likely due to the outcrossing nature of the species. Genetic structure analysis at 49,120 unique SNP loci across accessions identified small but obvious genetic differentiations.
{"title":"Novel Sources of Resistance to Fusarium oxysporum f. sp. lycopersici Race 3 Among Solanum pennellii Accessions","authors":"Jian Li, Jessica Chitwood-Brown, Gurleen Kaur, J. Labate, G. Vallad, Tong-Geon Lee, S. Hutton","doi":"10.21273/jashs05080-21","DOIUrl":"https://doi.org/10.21273/jashs05080-21","url":null,"abstract":"Fusarium wilt of tomato (Solanum lycopersicum), caused by fungal pathogen Fusarium oxysporum f. sp. lycopersici (Fol), is one of the most important diseases in tomato production. Three races of the pathogen are described, and race-specific resistance genes have been applied in commercial tomato cultivars for controlling the disease. Race 3 (Fol3) threatens tomato production in many regions around the world, and novel resistance resources could expand the diversity and durability of Fol resistance. The wild tomato species, Solanum pennellii, is reported to harbor broad resistance to Fol and was the source of two known Fol3 resistance genes. In this study, we evaluated 42 S. pennellii accessions for resistance to each fusarium wilt race. F1 plants, developed from crossing each accession with the Fol3 susceptible line ‘Suncoast’, were evaluated for Fol3 resistance, and BC1F1 plants were screened to determine the likelihood that Fol3 resistance was based on a novel locus (loci). Nearly all accessions showed resistance to Fol3, and many accessions were resistant to all races. Evaluation of F1 plants indicated a dominant resistance effect to Fol3 from most accessions. Genetic analysis indicated 24 accessions are expected to contain one or more novel Fol3 resistance loci other than an allele near the I-3 locus. To investigate genetic structure of the S. pennellii accessions used in this study, we genotyped all 42 accessions using genotyping by sequencing. Approximately 20% of the single nucleotide polymorphism (SNP) loci were heterozygous across accessions, likely due to the outcrossing nature of the species. Genetic structure analysis at 49,120 unique SNP loci across accessions identified small but obvious genetic differentiations.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44120273","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Heat stress symptoms in cool-season plants are characterized by loss of chlorophyll (Chl) and membrane stability, as well as oxidative damage. The objectives of this study were to determine whether foliar application of β-sitosterol, a naturally occurring plant metabolite, may promote heat tolerance by suppressing heat-induced leaf senescence as indicated by the maintenance of healthy turf quality (TQ), and Chl and membrane stability; and to determine its roles in regulating antioxidant metabolism in creeping bentgrass (Agrostis stolonifera). ‘Penncross’ plants were exposed to heat stress (35/30 °C day/night) optimal temperature conditions (nonstressed control, 22/17 °C day/night) for a duration of 28 days in environment-controlled growth chambers. Plants were foliar-treated with β-sitosterol (400 µM) or water only (untreated control) before heat stress, and at 7-day intervals through 28 days of heat stress. Plants treated with β-sitosterol had significantly greater TQ and Chl content, and significantly less electrolyte leakage (EL) than untreated controls at 21 and 28 days of heat stress. Application of β-sitosterol reduced malondialdehyde (MDA) content significantly at 21 and 28 days of heat stress, and promoted the activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX) from 14 through 28 days of heat stress. β-Sitosterol effectively improved heat tolerance through suppression of leaf senescence in creeping bentgrass exposed to heat stress in association with the alleviation of membrane lipid peroxidation and activation of the enzymatic antioxidant system.
{"title":"Sitosterol-mediated Antioxidant Regulation to Enhance Heat Tolerance in Creeping Bentgrass","authors":"S. Rossi, Bingru Huang","doi":"10.21273/jashs05107-21","DOIUrl":"https://doi.org/10.21273/jashs05107-21","url":null,"abstract":"Heat stress symptoms in cool-season plants are characterized by loss of chlorophyll (Chl) and membrane stability, as well as oxidative damage. The objectives of this study were to determine whether foliar application of β-sitosterol, a naturally occurring plant metabolite, may promote heat tolerance by suppressing heat-induced leaf senescence as indicated by the maintenance of healthy turf quality (TQ), and Chl and membrane stability; and to determine its roles in regulating antioxidant metabolism in creeping bentgrass (Agrostis stolonifera). ‘Penncross’ plants were exposed to heat stress (35/30 °C day/night) optimal temperature conditions (nonstressed control, 22/17 °C day/night) for a duration of 28 days in environment-controlled growth chambers. Plants were foliar-treated with β-sitosterol (400 µM) or water only (untreated control) before heat stress, and at 7-day intervals through 28 days of heat stress. Plants treated with β-sitosterol had significantly greater TQ and Chl content, and significantly less electrolyte leakage (EL) than untreated controls at 21 and 28 days of heat stress. Application of β-sitosterol reduced malondialdehyde (MDA) content significantly at 21 and 28 days of heat stress, and promoted the activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX) from 14 through 28 days of heat stress. β-Sitosterol effectively improved heat tolerance through suppression of leaf senescence in creeping bentgrass exposed to heat stress in association with the alleviation of membrane lipid peroxidation and activation of the enzymatic antioxidant system.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43605714","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Peach (Prunus persica) cultivars maintained at the U.S. Department of Agriculture program at Byron, GA, have never been characterized with any molecular markers. In this study, 20 microsatellite markers were used to genotype 112 cultivars and the data were analyzed to discern their population structure and phylogenetic relationships. STRUCTURE simulations revealed four K clusters and broad genetic admixture among the cultivars. Principal coordinate analysis (PCoA) showed the cultivar groups from western, northeastern, and southeastern U.S. states were adjacent to each other except cultivars from Michigan (close to most southeastern state groups) and Florida (most distant from the other groups). Principal component analysis (PCA) showed that these cultivars had no obvious PCA partitioning boundaries. The intertwined distribution in both PCoA and PCA partitions suggested many of them were genetically closely related to each other largely because most shared same ancestral parentages. Most pairwise distance means within and between the cultivar groups were relatively low, suggesting close phylogenetic relations among those cultivars, as were demonstrated in the phylogenetic tree. Limiting factors and perspectives relevant to peach breeding are discussed.
{"title":"Population Structure and Phylogeny of Some U.S. Peach Cultivars","authors":"Chunxian Chen, W. Okie","doi":"10.21273/jashs05117-21","DOIUrl":"https://doi.org/10.21273/jashs05117-21","url":null,"abstract":"Peach (Prunus persica) cultivars maintained at the U.S. Department of Agriculture program at Byron, GA, have never been characterized with any molecular markers. In this study, 20 microsatellite markers were used to genotype 112 cultivars and the data were analyzed to discern their population structure and phylogenetic relationships. STRUCTURE simulations revealed four K clusters and broad genetic admixture among the cultivars. Principal coordinate analysis (PCoA) showed the cultivar groups from western, northeastern, and southeastern U.S. states were adjacent to each other except cultivars from Michigan (close to most southeastern state groups) and Florida (most distant from the other groups). Principal component analysis (PCA) showed that these cultivars had no obvious PCA partitioning boundaries. The intertwined distribution in both PCoA and PCA partitions suggested many of them were genetically closely related to each other largely because most shared same ancestral parentages. Most pairwise distance means within and between the cultivar groups were relatively low, suggesting close phylogenetic relations among those cultivars, as were demonstrated in the phylogenetic tree. Limiting factors and perspectives relevant to peach breeding are discussed.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45050385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
P. Wadl, T. Rinehart, R. Olsen, Benjamin D. Waldo, J. Kirkbride
The genus Chionanthus, known as fringetrees, is a member of the olive family (Oleaceae). Chionanthus virginicus is an understory tree or shrub with a wide range in forests of the eastern United States and is used as an ornamental tree that is known to be free of insects and disease in the wild. The species is tolerant of a wide range of environmental conditions, and there is interest in developing new cultivars with improved horticultural traits, such as tree form or upright growth habit and superior flowering display that are widely adapted. To identify genepools in the native range of C. virginicus for use in breeding programs, the genetic diversity and population structure were assessed for 274 individuals from 12 locations in four states (Florida, Maryland, North Carolina, and Texas) using 26 simple sequence repeats (SSRs). An average of 12.54 alleles/locus were detected, allelic richness averaged 2.80. Genetic differentiation was 0.11, indicating moderate differentiation among subpopulations. Despite the high genetic diversity and low population differentiation, Bayesian clustering analysis identified six genetic groups that match the geographic distribution of collection sites. Analysis of molecular variance indicated that most (82%) of the variation is explained within individuals, and 11% and 7% of the variation is due to differences among individuals within populations and among populations. Analysis of isolation by distance across all samples showed a weak positive relationship between geographic distance and genetic distance. The C. virginicus samples analyzed in this study indicate there is sufficient diversity for germplasm collection for use in breeding programs. Given the relatively moderate genetic differentiation, there are not likely to be unique islands of genetic diversity that may be missed when gathering parental materials for a breeding program
{"title":"Genetic Diversity and Population Structure of Chionanthus virginicus","authors":"P. Wadl, T. Rinehart, R. Olsen, Benjamin D. Waldo, J. Kirkbride","doi":"10.21273/jashs05095-21","DOIUrl":"https://doi.org/10.21273/jashs05095-21","url":null,"abstract":"The genus Chionanthus, known as fringetrees, is a member of the olive family (Oleaceae). Chionanthus virginicus is an understory tree or shrub with a wide range in forests of the eastern United States and is used as an ornamental tree that is known to be free of insects and disease in the wild. The species is tolerant of a wide range of environmental conditions, and there is interest in developing new cultivars with improved horticultural traits, such as tree form or upright growth habit and superior flowering display that are widely adapted. To identify genepools in the native range of C. virginicus for use in breeding programs, the genetic diversity and population structure were assessed for 274 individuals from 12 locations in four states (Florida, Maryland, North Carolina, and Texas) using 26 simple sequence repeats (SSRs). An average of 12.54 alleles/locus were detected, allelic richness averaged 2.80. Genetic differentiation was 0.11, indicating moderate differentiation among subpopulations. Despite the high genetic diversity and low population differentiation, Bayesian clustering analysis identified six genetic groups that match the geographic distribution of collection sites. Analysis of molecular variance indicated that most (82%) of the variation is explained within individuals, and 11% and 7% of the variation is due to differences among individuals within populations and among populations. Analysis of isolation by distance across all samples showed a weak positive relationship between geographic distance and genetic distance. The C. virginicus samples analyzed in this study indicate there is sufficient diversity for germplasm collection for use in breeding programs. Given the relatively moderate genetic differentiation, there are not likely to be unique islands of genetic diversity that may be missed when gathering parental materials for a breeding program","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42477910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lillian Hislop, Elizabeth Stephanie, P. Flannery, Matheus Baseggio, M. Gore, W. Tracy
Sugarcane mosaic virus [SCMV (Potyvirus sugarcane mosaic virus)] is an ssRNA virus that negatively affects yield in maize (Zea mays) worldwide. Resistance to SCMV is controlled primarily by a single dominant gene (Scm1). The goal of this study was to identify sweet corn (Z. mays) inbreds that demonstrate resistance to SCMV, confirm the presence of genomic regions previously identified in maize associated with resistance, and identify other resistant loci in sweet corn. Eight plants from each of 563 primarily sweet corn inbred lines were tested for SCMV resistance. Plants were inoculated 14 d after planting and observed for signs of infection 24 d after planting. A subset of 420 inbred lines were genotyped using 7504 high-quality genotyping-by-sequencing single-nucleotide polymorphism markers. Population structure of the panel was observed, and a genome-wide association study was conducted to identify loci associated with SCMV resistance. Forty-six of the inbreds were found to be resistant to SCMV 10 d after inoculation. The Scm1 locus was confirmed with the presence of two significant loci on chromosome 6 (P = 2.5 × 10−8 and 1.6 × 10−8), 5 Mb downstream of the Scm1 gene previously located at Chr6: 14194429.14198587 and the surrounding 2.7-Mb presence–absence variation. We did not identify other loci associated with resistance. This research has increased information on publicly available SCMV-resistant germplasm useful to future breeding projects and demonstrated that SCMV resistance in this sweet corn panel is driven by the Scm1 gene.
{"title":"Sugarcane Mosaic Virus Resistance in the Wisconsin Sweet Corn Diversity Panel","authors":"Lillian Hislop, Elizabeth Stephanie, P. Flannery, Matheus Baseggio, M. Gore, W. Tracy","doi":"10.21273/jashs05097-21","DOIUrl":"https://doi.org/10.21273/jashs05097-21","url":null,"abstract":"Sugarcane mosaic virus [SCMV (Potyvirus sugarcane mosaic virus)] is an ssRNA virus that negatively affects yield in maize (Zea mays) worldwide. Resistance to SCMV is controlled primarily by a single dominant gene (Scm1). The goal of this study was to identify sweet corn (Z. mays) inbreds that demonstrate resistance to SCMV, confirm the presence of genomic regions previously identified in maize associated with resistance, and identify other resistant loci in sweet corn. Eight plants from each of 563 primarily sweet corn inbred lines were tested for SCMV resistance. Plants were inoculated 14 d after planting and observed for signs of infection 24 d after planting. A subset of 420 inbred lines were genotyped using 7504 high-quality genotyping-by-sequencing single-nucleotide polymorphism markers. Population structure of the panel was observed, and a genome-wide association study was conducted to identify loci associated with SCMV resistance. Forty-six of the inbreds were found to be resistant to SCMV 10 d after inoculation. The Scm1 locus was confirmed with the presence of two significant loci on chromosome 6 (P = 2.5 × 10−8 and 1.6 × 10−8), 5 Mb downstream of the Scm1 gene previously located at Chr6: 14194429.14198587 and the surrounding 2.7-Mb presence–absence variation. We did not identify other loci associated with resistance. This research has increased information on publicly available SCMV-resistant germplasm useful to future breeding projects and demonstrated that SCMV resistance in this sweet corn panel is driven by the Scm1 gene.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2021-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42529492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Interspecific hybridization is useful in raspberry (Rubus idaeus L. ssp. idaeus) breeding to introgression of traits such as heat or cold tolerance, and excellent fruit qualities. Rubus L. wild species in Asia, including Rubus parvifolius L., have been attracting a great deal of attention as sources of new traits in breeding raspberry and blackberry (Rubus fruticosus Agg.). We previously developed and selected IPI-1 and IPI-3 first backcross (BC1) hybrids, [‘Indian Summer’ (R. idaeus ssp. idaeus) × R. parvifolius] × ‘Indian Summer’, as raspberry cultivars adapted to the warm climate in parts of Japan. In this study, we investigated the growth, morphological traits, and fruit qualities, such as sugar, organic acid, anthocyanins, and carotenoids, of each of these IPI lines over a 2-year period to discern their potential as commercial raspberry cultivars. IPI lines had the characteristic of primocane fruit with overflowing from side buds while the parent, IP-1 (‘Indian Summer’ × R. parvifolius), did not. IPI lines showed significantly lower values in anthocyanin content than red raspberry ‘Skeena’, while showing higher carotenoid contents. This study is the first research about fruit qualities such as anthocyanin and carotenoid content of BC1 hybrids using Japanese wild Rubus species.
种间杂交在覆盆子(Rubus idaeus L. ssp)中是有用的。(伊德埃斯)育种，使其性状渗入，如耐热或耐寒性，以及优良的果实品质。亚洲野生种小红莓(Rubus parvifolius L.)作为树莓和黑莓(Rubus fruticosus Agg.)新品种的选育来源而受到广泛关注。我们之前开发并选择了IPI-1和IPI-3首次回交(BC1)杂交品种[' Indian Summer ' (R. idaeus ssp.)]。“印度之夏”，作为适应日本部分地区温暖气候的覆盆子品种。在这项研究中，我们研究了每一个IPI系在2年的时间里的生长、形态特征和果实品质，如糖、有机酸、花青素和类胡萝卜素，以确定它们作为商业覆盆子品种的潜力。IPI系具有侧芽外溢的原果性状，而亲本ip1(‘Indian Summer’× R. parvifolius)则没有。IPI品系花青素含量显著低于斯基纳红莓，而类胡萝卜素含量显著高于斯基纳红莓。本研究首次对日本野红莓BC1杂种果实花青素和类胡萝卜素含量等品质进行了研究。
{"title":"Fruit Qualities of Interspecific Hybrid and First Backcross Generations between Red Raspberry and Rubus parvifolius","authors":"Saki Toshima, Marika Fujii, Momoko Hidaka, Soya Nakagawa, T. Hirano, Hisato Kunitak","doi":"10.21273/jashs05111-21","DOIUrl":"https://doi.org/10.21273/jashs05111-21","url":null,"abstract":"Interspecific hybridization is useful in raspberry (Rubus idaeus L. ssp. idaeus) breeding to introgression of traits such as heat or cold tolerance, and excellent fruit qualities. Rubus L. wild species in Asia, including Rubus parvifolius L., have been attracting a great deal of attention as sources of new traits in breeding raspberry and blackberry (Rubus fruticosus Agg.). We previously developed and selected IPI-1 and IPI-3 first backcross (BC1) hybrids, [‘Indian Summer’ (R. idaeus ssp. idaeus) × R. parvifolius] × ‘Indian Summer’, as raspberry cultivars adapted to the warm climate in parts of Japan. In this study, we investigated the growth, morphological traits, and fruit qualities, such as sugar, organic acid, anthocyanins, and carotenoids, of each of these IPI lines over a 2-year period to discern their potential as commercial raspberry cultivars. IPI lines had the characteristic of primocane fruit with overflowing from side buds while the parent, IP-1 (‘Indian Summer’ × R. parvifolius), did not. IPI lines showed significantly lower values in anthocyanin content than red raspberry ‘Skeena’, while showing higher carotenoid contents. This study is the first research about fruit qualities such as anthocyanin and carotenoid content of BC1 hybrids using Japanese wild Rubus species.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2021-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49025169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spacers (psbM-trnD, trnV-trnA, accD-psal, rrn23, trnk-rps16, and ycf1) were analyzed in 404 wild individuals from 28 populations in the three river area in Yunnan Province, China. The results showed that the six chloroplast DNA sequences were aligned with 61 polymorphic sites, including 50 indels and 11 haplotypes in 404 individuals, which revealed a low level of genetic diversity (total genetic diversity = 0.240, and the average value of nucleotide diversity = 0.00024). In addition, a fairly low genetic differentiation [coefficients for genetic differentiation among populations (GST) = 0.099, number of substitution (NST) = 0.081] was found among the studied populations, and NST value was less than GST, which indicated that no significant phylogeographic structure existed in those populations. Furthermore, analysis of molecular variance revealed that great genetic variance (91%) came from individuals within the populations, which indicated that there was no clear genetic differentiation among populations. On the basis of these findings, a conservation plan was proposed to sample or preserve fewer populations but with more individuals from each population.
春兰(Cymbidium tortisepalum)是中国云南省的一种原生兰花，具有极高的观赏价值和经济价值。为了揭示野生金龟草资源的遗传变异水平、分布和结构，对云南三江地区28个居群404个野生个体的6个叶绿体DNA基因间间隔序列(psbM-trnD、trnV-trnA、accD-psal、rrn23、trnk-rps16和ycf1)进行了分析。结果表明，6条叶绿体DNA序列在404个个体中有61个多态性位点，包括50个索引和11个单倍型，遗传多样性水平较低(总遗传多样性= 0.240，核苷酸多样性平均值= 0.00024)。种群间遗传分化系数(coefficient for genetic differentiation, GST) = 0.099，代入数(number of substitution, NST) = 0.081，且NST值小于GST，表明种群间不存在显著的系统地理结构。分子变异分析表明，居群内个体的遗传变异较大(91%)，表明居群间不存在明显的遗传分化。在这些发现的基础上，提出了一项保护计划，即取样或保护更少的种群，但每个种群中有更多的个体。
{"title":"Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China","authors":"X. Ma, Min Tang, Y. Bi, Jun-bo Yang","doi":"10.21273/jashs05046-21","DOIUrl":"https://doi.org/10.21273/jashs05046-21","url":null,"abstract":"Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spacers (psbM-trnD, trnV-trnA, accD-psal, rrn23, trnk-rps16, and ycf1) were analyzed in 404 wild individuals from 28 populations in the three river area in Yunnan Province, China. The results showed that the six chloroplast DNA sequences were aligned with 61 polymorphic sites, including 50 indels and 11 haplotypes in 404 individuals, which revealed a low level of genetic diversity (total genetic diversity = 0.240, and the average value of nucleotide diversity = 0.00024). In addition, a fairly low genetic differentiation [coefficients for genetic differentiation among populations (GST) = 0.099, number of substitution (NST) = 0.081] was found among the studied populations, and NST value was less than GST, which indicated that no significant phylogeographic structure existed in those populations. Furthermore, analysis of molecular variance revealed that great genetic variance (91%) came from individuals within the populations, which indicated that there was no clear genetic differentiation among populations. On the basis of these findings, a conservation plan was proposed to sample or preserve fewer populations but with more individuals from each population.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2021-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44500051","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yang Hu, Chao Gao, Quanen Deng, J. Qiu, Hongli Wei, Lushan Yang, Jiajun Xie, De-Chun Liao
Petalized anther abortion is an important characteristic of male sterility in plants. The male sterile plants (HB-21) evincing petalized anther abortion previously discovered in a clone population of the Camellia oleifera cultivar Huashuo by our research group were selected as the experimental material in this study. Using plant microscopy and anatomic methods and given the correspondence between external morphology and internal structure, we studied the anatomic characteristics of petalized anther abortion (with a fertile plant as the control group) in various stages, from flower bud differentiation to anther maturity, in hopes of providing a theoretical basis for research on and applications of male sterile C. oleifera plants, a new method for the selection of male sterile C. oleifera cultivars, and improvements in the yield and quality of C. oleifera. In this study, the development of anthers in C. oleifera was divided into 14 stages. Petalized anther abortion in male sterile plants was mainly initiated in the second stage (the stage of sporogenous cells). Either the petalized upper anther parts did not form pollen sacs, or the entire anthers did not form pollen sacs. The lower parts of some anthers could form deformed pollen sacs and develop, and these anthers could be roughly divided into two types: fully and partially petalized anthers. Abnormal callose and the premature degradation of the tapetum occurred in the pollen sacs formed by partially petalized anthers during the development process, resulting in the absence of inclusions in the pollen grains formed. Small quantities of mature pollen grains withered inward from the germinal furrows, exhibiting obvious abortion characteristics. The relative in vitro germination rate of the pollen produced by the partially petalized anthers of sterile plants was 11.20%, and the relative activity of triphenyltetrazolium chloride was 3.24%, while the fully petalized anthers did not generate pollen grains. Either the petalized anthers in male sterile plants did not produce pollen, or the vitality of the small amounts of pollen produced by sterile plants was very low compared with that of fertile plants. Such male sterile plants could be used to select correct clones and have good prospects for application in production.
{"title":"Anatomical Characteristics of Petalized Anther Abortion in Male Sterile Camellia oleifera Plants","authors":"Yang Hu, Chao Gao, Quanen Deng, J. Qiu, Hongli Wei, Lushan Yang, Jiajun Xie, De-Chun Liao","doi":"10.21273/jashs05086-21","DOIUrl":"https://doi.org/10.21273/jashs05086-21","url":null,"abstract":"Petalized anther abortion is an important characteristic of male sterility in plants. The male sterile plants (HB-21) evincing petalized anther abortion previously discovered in a clone population of the Camellia oleifera cultivar Huashuo by our research group were selected as the experimental material in this study. Using plant microscopy and anatomic methods and given the correspondence between external morphology and internal structure, we studied the anatomic characteristics of petalized anther abortion (with a fertile plant as the control group) in various stages, from flower bud differentiation to anther maturity, in hopes of providing a theoretical basis for research on and applications of male sterile C. oleifera plants, a new method for the selection of male sterile C. oleifera cultivars, and improvements in the yield and quality of C. oleifera. In this study, the development of anthers in C. oleifera was divided into 14 stages. Petalized anther abortion in male sterile plants was mainly initiated in the second stage (the stage of sporogenous cells). Either the petalized upper anther parts did not form pollen sacs, or the entire anthers did not form pollen sacs. The lower parts of some anthers could form deformed pollen sacs and develop, and these anthers could be roughly divided into two types: fully and partially petalized anthers. Abnormal callose and the premature degradation of the tapetum occurred in the pollen sacs formed by partially petalized anthers during the development process, resulting in the absence of inclusions in the pollen grains formed. Small quantities of mature pollen grains withered inward from the germinal furrows, exhibiting obvious abortion characteristics. The relative in vitro germination rate of the pollen produced by the partially petalized anthers of sterile plants was 11.20%, and the relative activity of triphenyltetrazolium chloride was 3.24%, while the fully petalized anthers did not generate pollen grains. Either the petalized anthers in male sterile plants did not produce pollen, or the vitality of the small amounts of pollen produced by sterile plants was very low compared with that of fertile plants. Such male sterile plants could be used to select correct clones and have good prospects for application in production.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2021-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46721607","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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