Geobiology最新文献

This study documents the distribution of matgrounds in a wide variety of environments recorded in the Ordovician Lashkerak and Ghelli Formations in the Alborz Mountains of northern Iran in order to evaluate controls on their distribution along the marine depositional profile. Detailed facies analysis allowed differentiating three groups of facies associations in the Lower to Upper Ordovician deposits of the Lashkerak formation: (i) estuarine system; (ii) wave-dominated shoreface-offshore complex; and (iii) mixed river- and wave-influenced deltaic system. The Middle to Upper Ordovician deposits of the Ghelli formation are divided into two groups of facies associations: (i) tide-influenced deltaic succession and (ii) deep-water fan system. Microbially induced sedimentary structures (MISS) are present in deposits formed in the central estuarine basin (Lashkerak formation) and in proximal lobes and lobe fringes of deep–water turbidite fans (Ghelli formation). On the contrary, MISS are absent in deposits from the wave-dominated shoreface-offshore complex, river- and tide-dominated deltas, and various subenvironments of the incised wave-dominated estuary (i.e., bayhead delta and estuary mouth) and the deep-marine turbidite fan system (i.e., turbidite channel, slope, and outer lobe). The lack of evidence of mat-building microorganisms in the deltaic systems may have resulted from two factors: (1) high physico-chemical stressors caused by river-induced processes, and (2) increase in degree of sediment disturbance, biodiffusion, and bioirrigation by burrowing organisms. Formation of microbial mats in the wave-dominated shoreface-offshore complex was inhibited by the activity of an abundant and diverse infauna capable of reworking the sediment. Our analysis shows that the spatial distribution of microbial mats was controlled by an interplay of environmental factors and innovations in animal-substrate interactions, mostly expressed by secular changes in bioturbation. This study supports the notion that the agronomic revolution was diachronic, with marginal-marine and deep-sea ecosystems lagging behind shallow-marine settings.

Oxidative weathering of pyrite plays an important role in the biogeochemical cycling of Fe and S in terrestrial environments. While the mechanism and occurrence of biologically accelerated pyrite oxidation under acidic conditions are well established, much less is known about microbially mediated pyrite oxidation at circumneutral pH. Recent work (Percak-Dennett et al., 2017, Geobiology, 15, 690) has demonstrated the ability of aerobic chemolithotrophic microorganisms to accelerate pyrite oxidation at circumneutral pH and proposed two mechanistic models by which this phenomenon might occur. Here, we assess the potential relevance of aerobic microbially catalyzed circumneutral pH pyrite oxidation in relation to subsurface shale weathering at Susquehanna Shale Hills Critical Zone Observatory (SSHCZO) in Pennsylvania, USA. Specimen pyrite mixed with native shale was incubated in groundwater for 3 months at the inferred depth of in situ pyrite oxidation. The colonized materials were used as an inoculum for pyrite-oxidizing enrichment cultures. Microbial activity accelerated the release of sulfate across all conditions. 16S rRNA gene sequencing and metagenomic analysis revealed the dominance of a putative chemolithoautotrophic sulfur-oxidizing bacterium from the genus Thiobacillus in the enrichment cultures. Previously proposed models for aerobic microbial pyrite oxidation were assessed in terms of physical constraints, enrichment culture geochemistry, and metagenomic analysis. Although we conclude that subsurface pyrite oxidation at SSCHZO is largely abiotic, this work nonetheless yields new insight into the potential pathways by which aerobic microorganisms may accelerate pyrite oxidation at circumneutral pH. We propose a new “direct sulfur oxidation” pathway, whereby sulfhydryl-bearing outer membrane proteins mediate oxidation of pyrite surfaces through a persulfide intermediate, analogous to previously proposed mechanisms for direct microbial oxidation of elemental sulfur. The action of this and other direct microbial pyrite oxidation pathways have major implications for controls on pyrite weathering rates in circumneutral pH sedimentary environments where pore throat sizes permit widespread access of microorganisms to pyrite surfaces.

Taphonomic processes, especially post-mortem biological decomposition, act as crucial controls on the microbial fossil record. Information loss during the fossilization process obscures interpretation of ancient microbial ecology and limits our view of preserved ecosystems. Conversely, taphonomic information can itself provide insight into fossilization pathways and processes. This information-gain approach requires specific attention to taphonomic patterns in ancient assemblages and robust modern analogue data to serve as points of reference. In this study, we combine experimental taphonomy with decomposition models in order to constrain taphonomic hypotheses regarding Proterozoic microfossil assemblages. Several filamentous and coccoidal prokaryotic and eukaryotic phototrophs were evaluated for taphonomic pattern over the course of a short (~100 days) decomposition experiment. In parallel, simple numerical models were constructed to explain potential taphonomic pathways. These analogue data were then compared to two Mesoproterozoic fossil assemblages, the ~1.5 Ga Kotuikan Formation, Siberia, and the ~1 Ga Angmaat Formation, Canada. Concordant with previous experiments and observations, our results suggest that sheath morphology is more persistent than cell/trichome morphology during early stages of decomposition. These experiments also suggest that taphonomic change in cell morphology may follow one of several trajectories, resulting in distinct taphonomic endpoints. Model output suggests two categories of underlying mechanism and resultant taphonomic trajectory: (1) uniform decomposition, resulting in a low overall taphonomic grade and poor preservation, and (2) faster decomposition of structurally compromised individuals, producing a final population with better overall preservation of very few individuals. In this experiment, cells of coccoidal organisms exhibit the first pattern and trichomes of filamentous organisms and some sheaths exhibit the second. Comparison with preserved microfossil assemblages suggests that differences in taphonomic pattern between parts of an assemblage could be useful in assessing taphonomic processes or degree of taphonomic loss in an entire assemblage.

In silica-rich hot spring environments, internally laminated, digitate sinter deposits are often interpreted as bio-mediated structures. The organic components of microbial communities (cell surfaces, sheaths and extracellular polymeric substances) can act as templates for silica precipitation, therefore influencing digitate sinter morphogenesis. In addition to biologic surface-templating effects, various microenvironmental factors (hydrodynamics, local pH and fluctuating wind patterns) can also influence silica precipitation, and therefore the morphology of resulting digitate sinters. Digitate sinter morphology thus depends on the dynamic interplay between microenvironmentally driven silica precipitation and microbial growth, but the relative contributions of both factors are a topic of continuing research. Here we present a detailed study of digitate silica sinters in distal, low-temperature regimes of the El Tatio geothermal field, Chile. This high-altitude geothermal field is extremely arid and windy, and has one of the highest silica precipitation rates found in the world. We find that digitate silica sinters at El Tatio always accrete into the prevailing eastward wind direction and exhibit laminar growth patterns coinciding with day–night cycles of wind- and thermally driven evaporation and rewetting. Subaerial parts of digitate sinters lack preserved organics and sinter textures that would indicate past microbial colonization, while filamentous cyanobacteria with resistant, silicified sheaths only inhabit subaqueous cavities that crosscut the primary laminations. We conclude that, although fragile biofilms of extremophile micro-organisms may have initially been present and templated silica precipitation at the tips of these digitate sinters, the saltation of sand grains and precipitation of silica by recurrent wind- and thermally driven environmental forcing at El Tatio are important, if not dominant factors shaping the morphology of these digitate structures. Our study sheds light on the relative contributions of biogenic and abiogenic factors in sinter formation in geothermal systems, with geobiological implications for the cautious interpretation of stromatolite-like features in ancient silica deposits on Earth and Mars.

Soil samples from a transect from low to highly hydrocarbon-contaminated soils were collected around the Brazilian Antarctic Station Comandante Ferraz (EACF), located at King George Island, Antarctica. Quantitative PCR (qPCR) analysis of bacterial 16S rRNA genes, 16S rRNA gene (iTag), and shotgun metagenomic sequencing were used to characterize microbial community structure and the potential for petroleum degradation by indigenous microbes. Hydrocarbon contamination did not affect bacterial abundance in EACF soils (bacterial 16S rRNA gene qPCR). However, analysis of 16S rRNA gene sequences revealed a successive change in the microbial community along the pollution gradient. Microbial richness and diversity decreased with the increase of hydrocarbon concentration in EACF soils. The abundance of Cytophaga, Methyloversatilis, Polaromonas, and Williamsia was positively correlated (p-value = <.05) with the concentration of total petroleum hydrocarbons (TPH) and/or polycyclic aromatic hydrocarbons (PAH). Annotation of metagenomic data revealed that the most abundant hydrocarbon degradation pathway in EACF soils was related to alkyl derivative-PAH degradation (mainly methylnaphthalenes) via the CYP450 enzyme family. The abundance of genes related to nitrogen fixation increased in EACF soils as the concentration of hydrocarbons increased. The results obtained here are valuable for the future of bioremediation of petroleum hydrocarbon-contaminated soils in polar environments.

The Neoproterozoic ‘snowball Earth’ hypothesis suggests that a runaway ice–albedo feedback led to two intense glaciations around 717–635 million years ago, and this global ice cover would have drastically impacted biogeochemical cycles. Testing the predictions of this hypothesis against the rock record is key to understanding Earth’s surface evolution in the Neoproterozoic. A central tenet of the snowball Earth hypothesis is that extremely high atmospheric CO₂ levels—supplied by volcanic degassing over millions of years—would be required to overcome a strong ice–albedo feedback and trigger deglaciation. This requires severely diminished continental weathering (and associated CO₂ drawdown) during glaciation, and implies that carbonate minerals would not precipitate from syn-glacial seawater due to a lack of alkalinity influxes into ice-covered oceans. In this scenario, syn-glacial seawater chemistry should instead be dominated by chemical exchange with the oceanic crust and volcanic systems, developing low pH and low Mg/Ca ratios. However, sedimentary rocks deposited during the Sturtian glaciation from the Adelaide Fold Belt—and contemporaneous successions globally—show evidence for syn-sedimentary dolomite precipitation in glaciomarine environments. The dolomitic composition of these syn-glacial sediments and post-glacial ‘cap carbonates’ implies that carbonate precipitation and Mg cycling must have remained active during the ~50 million-year Sturtian glaciation. These syn-glacial carbonates highlight a gap in our understanding of continental weathering—and therefore, the carbon cycle—during snowball Earth. In light of these observations, a Precambrian global biogeochemical model (PreCOSCIOUS) was modified to explore scenarios of syn-glacial chemical weathering, ocean chemistry and Sturtian carbonate mineralogy. Modelling results suggest that a small degree of chemical weathering during glaciation would have been capable of maintaining high seawater Mg/Ca ratios and carbonate precipitation throughout the Sturtian glaciation. This is consistent with a severe ice age during the Sturtian, but challenges predictions of biogeochemical cycling during the endmember ‘hard snowball’ models. A small degree of continental weathering might also help explain the extreme duration of the Sturtian glaciation, which appears to have been the longest ice age in Earth history.

The Deccan Traps in Western India is hypothesized to have caused significant fluctuations in climatic condition and organic matter (OM) productivity across the Cretaceous-Paleogene Boundary (K/PgB). The periodic release of large amounts of volatiles into the atmosphere is thought to drive these changes. Yet, direct impact of volcanism on the carbon cycle and ecosystem remains relatively unconstrained. For the first time, we attempt to trace changes in both marine and terrestrial carbon reservoirs from pre- and intervolcanic sedimentary units (infra- and inter-trappeans respectively) from Rajahmundry, ~1500 km SE of main eruption sites in Western India. Molecular level characterization of OM and stable isotope composition of carbonates (δ¹³C_carb), bulk OM (δ¹³C_org), and n-alkane (δ¹³C_alk and δD_alk) have been analysed to provide a chemo-stratigraphic framework. In Rajahmundry, high CO₂ concentration estimated from infra-trappean carbonate nodule is synchronous with the onset of the Deccan Traps and the Late Maastrichtian warming episode. Impact of the warming event is reflected in Rajahmundry from a major shift in the terrestrial ecosystem. Marine OM production also seems to have been low throughout the infra-trappean. A steady decrease in δ¹³C_carb values, increase in mortality rates and dwarfism in invertebrates immediately below the first volcanic units in Rajahmundry suggest stressed conditions from eruption in the western part of India ~40–60 kyrs prior to K/PgB. A significant increase in heterotrophic activity is observed after the volcanic deposits in Rajahmundry that seems to have controlled the marine carbon reservoir for a maximum of ~200 kyrs after the boundary. Advent of pteridophytes, increase in carbon content and positive shifts in δ¹³C_carb and δ¹³C_alk values in the upper inter-trappean units mark the onset of recovery in terrestrial and marine environments. Overall, our results suggest significant perturbations in the carbon reservoir as a consequence of the Deccan eruption.

Modern carbonate tufa towers in the alkaline (~pH 9.5) Big Soda Lake (BSL), Nevada, exhibit rapid precipitation rates (exceeding 3 cm/year) and host diverse microbial communities. Geochemical indicators reveal that carbonate precipitation is, in part, promoted by the mixing of calcium-rich groundwater and carbonate-rich lake water, such that a microbial role for carbonate precipitation is unknown. Here, we characterize the BSL microbial communities and evaluate their potential effects on carbonate precipitation that may influence fast carbonate precipitation rates of the active tufa mounds of BSL. Small subunit rRNA gene surveys indicate a diverse microbial community living endolithically, in interior voids, and on tufa surfaces. Metagenomic DNA sequencing shows that genes associated with metabolisms that are capable of increasing carbonate saturation (e.g., photosynthesis, ureolysis, and bicarbonate transport) are abundant. Enzyme activity assays revealed that urease and carbonic anhydrase, two microbial enzymes that promote carbonate precipitation, are active in situ in BSL tufa biofilms, and urease also increased calcium carbonate precipitation rates in laboratory incubation analyses. We propose that, although BSL tufas form partially as a result of water mixing, tufa-inhabiting microbiota promote rapid carbonate authigenesis via ureolysis, and potentially via bicarbonate dehydration and CO₂ outgassing by carbonic anhydrase. Microbially induced calcium carbonate precipitation in BSL tufas may generate signatures preserved in the carbonate microfabric, such as stromatolitic layers, which could serve as models for developing potential biosignatures on Earth and elsewhere.