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Living to Lithified: Construction and Preservation of Silicified Biomarkers 从生活到硅化:硅化生物标记的构建与保存
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-09-25 DOI: 10.1111/gbi.12620
Kalen L. Rasmussen, Patrick H. Thieringer, Sophia Nevadomski, Aaron M. Martinez, Katherine S. Dawson, Frank A. Corsetti, Xin-Yuan Zheng, Yiwen Lv, Xinyang Chen, Aaron J. Celestian, William M. Berelson, Nick E. Rollins, John R. Spear

Whole microorganisms are rarely preserved in the fossil record but actively silicifying environments like hot springs provide an opportunity for microbial preservation, making silicifying environments critical for the study of microbial life through time on Earth and possibly other planetary bodies. Yet, the changes that biosignatures may undergo through lithification and burial remain unconstrained. At Steep Cone Geyser in Yellowstone National Park, we collected microbial material from (1) the living system across the active outflows, (2) the silicified areas adjacent to flows, and (3) lithified and buried material to assess the preservation of biosignatures and their changes across the lithification transect. Five biofabrics, built predominantly by Cyanobacteria Geitlerinema, Pseudanabaenaceae, and Leptolyngbya with some filamentous anoxygenic phototrophs contributions, were identified and tracked from the living system through the process of silicification/lithification. In the living systems, δ30Si values decrease from +0.13‰ in surficial waters to −2‰ in biomat samples, indicating a kinetic isotope effect potentially induced by increased association with actively growing biofabrics. The fatty acids C16:1 and iso-C14:0 and the hydrocarbon C17:0 were disentangled from confounding signals and determined to be reliable lipid biosignatures for living biofabric builders and tenant microorganisms. Builder and tenant microbial biosignatures were linked to specific Cyanobacteria, anoxygenic phototrophs, and heterotrophs, which are prominent members of the living communities. Upon lithification and burial, silicon isotopes of silicified biomass began to re-equilibrate, increasing from δ30Si −2‰ in living biomats to −0.55‰ in lithified samples. Active endolithic microbial communities were identified in lithified samples and were dominated by Cyanobacteria, heterotrophic bacteria, and fungi. Results indicate that distinct microbial communities build and inhabit silicified biofabrics through time and that microbial biosignatures shift over the course of lithification. These findings improve our understanding of how microbial communities silicify, the biomarkers they retain, and transitionary impacts that may occur through lithification and burial.

整个微生物很少保存在化石记录中,但温泉等活跃的硅化环境却为微生物的保存提供了机会,这使得硅化环境对于研究地球上微生物生命的发展至关重要,也可能对研究其他行星体的微生物生命发展至关重要。然而,生物特征在岩石化和掩埋过程中可能发生的变化仍未受到制约。在黄石国家公园的陡锥间歇泉,我们收集了来自(1)活动外流的生命系统、(2)邻近流体的硅化区域以及(3)岩化和掩埋材料的微生物材料,以评估生物特征的保存情况及其在岩化横断面上的变化。通过硅化/碎石化过程,从生物系统中识别并追踪了五种生物结构,主要由蓝细菌 Geitlerinema、拟蓝细菌 Pseudanabaenaceae 和 Leptolyngbya 构建,也有一些丝状无氧光养菌的贡献。在生物系统中,δ30Si 值从表层水的+0.13‰下降到生物体样本的-2‰,这表明与生长活跃的生物织物的联系增加可能诱发了动力学同位素效应。脂肪酸 C16:1 和异 C14:0 以及碳氢化合物 C17:0 被从干扰信号中分离出来,并被确定为生物织物建造者和租户微生物的可靠脂质生物特征。建造者和租户微生物的生物特征与特定的蓝藻、无氧光养生物和异养生物相关联,它们是生物群落的重要成员。在碎石化和掩埋过程中,硅化生物质的硅同位素开始重新平衡,从活体生物群落中的δ30Si -2‰增加到碎石化样本中的δ30Si -0.55‰。在石化样本中发现了活跃的石内微生物群落,其中以蓝藻、异养细菌和真菌为主。研究结果表明,不同的微生物群落会随着时间的推移建立并栖息在硅化生物织物中,而且微生物的生物特征会随着岩化过程而改变。这些发现加深了我们对微生物群落如何硅化、它们保留的生物标志物以及在岩石化和掩埋过程中可能产生的过渡影响的理解。
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引用次数: 0
Fossil Geyserite and Testate Amoebae in Geothermal Spring Vent Pools: Paleoecology and Variable Preservation Quality in Jurassic Sinter of Patagonia (Deseado Massif, Argentina) 地热泉喷口池中的间歇泉化石和睾丸变形虫:巴塔哥尼亚侏罗纪烧结矿中的古生态学和不同的保存质量(阿根廷德萨多山丘)
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-09-25 DOI: 10.1111/gbi.12621
Ana Julia Sagasti, Kathleen A. Campbell, Juan L. García Massini, Amanda Galar, Diego M. Guido, Pascale Gautret

Geyserite is a type of terrestrial siliceous hot spring deposit (sinter) formed subaerially in proximal vent areas, with near-neutral pH, alkali chloride discharge fluids characterized by initial high temperatures (~73°C to up to 100°C) that fluctuate rapidly in relation to dynamic hydrology, seasonality, wind, and other environmental parameters. We analyzed sinters at the Claudia paleogeothermal field from the Late Jurassic (~150 Ma) Deseado Massif geological province, Argentinean Patagonia. The geyserite samples—with spicular to columnar to nodular morphologies—contain abundant microfossils in monotypic assemblages that occur in three diagenetic states of preservation. The best-preserved microfossils consist of vesicle-like structures with radial heteropolar symmetry (~35 μm average diameter), circular apertures, smooth walls lacking ornamentation, and disk- or beret-like shapes. Comparisons with extant, morphologically similar organisms suggest an affinity with the testate amoebae of the Arcella hemisphaerica–Arcella rotundata complex and Centropyxis aculeata strain discoides. These species occur in active geothermal pools between 22°C and 45°C, inconsistent with the temperature of formation of modern geyserites. We propose that the testate amoebae may have colonized the geyserite during cooler phases in between spring-vent eruptive cycles to prey on biofilms. Silica precipitation through intermittent bathing and splashing of fluctuating thermal fluid discharge could have led to their entrapment and fossilization. Petrographic analysis supports cyclicity in paleovent water eruptions and later diagenesis that transformed the opal into quartz. Spatially patchy degradation and modification of the silicified microorganisms resulted in variable preservation quality of the microfossils. This contribution illustrates the importance of microscale analysis to locate early silicification and identify high-quality preservation of fossil remains in siliceous hot spring deposits, which are important in early life studies on Earth and potentially Mars.

间歇泉是一种陆地硅质温泉沉积物(烧结矿),形成于近喷口地区的地下,pH 值接近中性,以碱式氯化物排出流体为特征,初始温度较高(约 73°C 至高达 100°C),并随动态水文、季节性、风力和其他环境参数的变化而快速波动。我们对阿根廷巴塔哥尼亚晚侏罗世(约 150 Ma)德萨多地块地质省克劳迪亚古地热场的间歇泉进行了分析。间歇喷泉岩样本--形态从针状到柱状再到结节状--包含丰富的微化石,这些微化石以单型组合的形式出现在三种成岩保存状态中。保存最完好的微化石由囊泡状结构组成,具有径向异极对称性(平均直径约 35 μm)、圆形孔隙、无装饰的光滑壁以及盘状或贝雷石状形状。与现存形态相似的生物进行比较后发现,它们与 Arcella hemisphaerica-Arcella rotundata 复合体中的睾丸变形虫和 Centropyxis aculeata strain discoides 有亲缘关系。这些物种出现在 22°C 至 45°C 的活跃地热池中,与现代间歇泉的形成温度不符。我们认为,睾丸变形虫可能是在春季-喷口喷发周期之间的较冷阶段定居在间歇喷泉中,捕食生物膜。由于间歇性的沐浴和波动的热流体排放物的飞溅,硅沉淀可能导致它们被困和化石化。岩相分析证实了古溶剂水喷发的周期性以及后来将蛋白石转化为石英的成岩作用。硅化微生物在空间上的斑驳降解和改变导致微化石的保存质量参差不齐。该研究成果说明了微尺度分析对于确定硅质温泉沉积物中早期硅化的位置和高质量保存化石遗迹的重要性,这对于地球和潜在火星的早期生命研究非常重要。
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引用次数: 0
Morphological and Microbial Diversity of Hydromagnesite Microbialites in Lake Salda: A Mars Analog Alkaline Lake 萨尔达湖中水镁石微生物岩的形态和微生物多样性:火星模拟碱性湖。
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-09-23 DOI: 10.1111/gbi.12619
Yagmur Gunes, Fatih Sekerci, Burak Avcı, Thijs J. G. Ettema, Nurgul Balci

Lake Salda, a terrestrial analog for the paleolake in Jezero Crater on Mars, hosts active, subfossil, and fossil hydromagnesite microbialites, making it an ideal location to study microbialite formation and subsequent processes. Our understanding of this record is still limited by an incomplete knowledge of the macro- and mesoscale morphotypes of microbialites, along with their spatial distribution and correlation with microbial and geochemical processes that influence microbialite formation. In this study, we investigated the spatial distribution, morphotypes, mineralogy, geochemistry, and microbial diversity of the microbialites and identified six distinct zones (Zone I to Zone VI) with major microbialite build-ups in Lake Salda. Newly identified microbialites were classified based on the macro- and mesostructures. Our work shows that the lake contains stromatolites, thrombolites, stromatolitic thrombolites, dendrolites, and microbially induced sedimentary structures. At macroscale, Lake Salda microbialites exhibit hemispheres, stacked domes, and laterally linked columnar structures while minicolumns, knobs, mesoclots, laminae, and botryoidal structures are common at mesoscale. The macro- and mesoscale distribution of different microbialite types spatially correlates with microbial community composition and water depth. Deep-growing microbialites with a low abundance of Cyanobacteria (∼1%–4%) and high abundance of Firmicutes (28%–93%) exhibit steeply convex lamination, producing finger-like minicolumnar mesostructures. In contrast, shallow-growing microbialites with a low abundance of Firmicutes (0%–5%) and high abundance of Cyanobacteria (11%–37%) have well-preserved gently convex millimeter-scale lamination, resulting in cauliflower mesostructures. Palygorskite ((Mg, Al)2Si4O10(OH)) is identified in the diatom-rich microbial layer of the deep-growing microbialites. Regardless of the microbialite types, hydromagnesite and aragonite are present in the extracellular polymeric substance (EPS)-rich zone of the shallow and deep-growing microbialites. Overall, environmental changes (e.g., water depth and, accommodation space) play a major role in the formation and spatial distribution of different microbialite morphologies at the macro- and mesoscale. Differences in the relative abundance of dominant microorganisms between mesostructured types suggest that mesomorphology may be influenced by changes in microbial diversity. Spatial variations in the microbialite morphotypes, along with the abundant presence of entombed biomass (e.g., mineralized filaments), may indicate areas that have a high potential for the preservation of biosignatures.

萨尔达湖是火星杰泽罗陨石坑古湖的陆地类似物,湖中有活性、亚化石和化石水镁石微生物岩,是研究微生物岩形成及其后续过程的理想地点。由于对微生物岩的宏观和中观形态、空间分布以及与影响微生物岩形成的微生物和地球化学过程的相关性了解不全面,我们对这一记录的理解仍然受到限制。在这项研究中,我们调查了微生物岩的空间分布、形态、矿物学、地球化学和微生物多样性,并确定了萨尔达湖微生物岩主要堆积的六个不同区域(I 区至 VI 区)。根据宏观和中观结构对新发现的微生物岩进行了分类。我们的工作表明,萨尔达湖含有叠层岩、血栓岩、叠层血栓岩、树枝状岩和微生物诱发的沉积结构。在宏观尺度上,萨尔达湖微生物岩表现出半球状、堆叠圆顶状和横向相连的柱状结构,而在中观尺度上则常见小柱状、旋钮状、中柱状、层状和植物状结构。不同微生物岩类型在宏观和中观尺度上的分布与微生物群落组成和水深在空间上相关。蓝藻含量低(∼1%-4%)、固着菌含量高(28%-93%)的深生长微生物岩呈现陡凸层理,产生指状小柱状中层结构。相比之下,生长较浅的微生物岩中,固着菌含量较低(0%-5%),而蓝藻含量较高(11%-37%),其毫米尺度的缓凸层理保存完好,形成菜花状的中柱结构。在深生长微生物岩中富含硅藻的微生物层中发现了白云石((镁、铝)2Si4O10(OH))。不管是哪种类型的微生物岩,在浅生和深生微生物岩的细胞外聚合物质(EPS)富集区都存在水镁石和文石。总体而言,环境变化(如水深和容纳空间)对宏观和中观尺度上不同微生物岩形态的形成和空间分布起着重要作用。中层结构类型之间主要微生物相对丰度的差异表明,中层形态可能受到微生物多样性变化的影响。微生物岩形态的空间变化,以及大量存在的埋藏生物质(如矿化丝),可能表明哪些区域具有保存生物特征的高潜力。
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引用次数: 0
Oceanic and Sedimentary Microbial Sulfur Cycling Controlled by Local Organic Matter Flux During the Ediacaran Shuram Excursion in the Three Gorges Area, South China 中国南方三峡地区埃迪卡拉纪舒拉姆扩张期间受当地有机质通量控制的海洋和沉积微生物硫循环。
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-09-19 DOI: 10.1111/gbi.12617
Fumihiro Matsu'ura, Yusuke Sawaki, Tsuyoshi Komiya, Jian Han, Shigenori Maruyama, Takayuki Ushikubo, Kenji Shimizu, Yuichiro Ueno
<div> <p>The increased difference in the sulfur isotopic compositions of sedimentary sulfate (carbonate-associated sulfate: CAS) and sulfide (chromium-reducible sulfur: CRS) during the Ediacaran Shuram excursion is attributed to increased oceanic sulfate concentration in association with the oxidation of the global ocean and atmosphere. However, recent studies on the isotopic composition of pyrites have revealed that CRS in sediments has diverse origins of pyrites. These pyrites are formed either in the water column/shallow sediments, where the system is open with respect to sulfate, or in deep sediments, where the system is closed with respect to sulfate. The δ<sup>34</sup>S value of sulfate in the open system is equal to that of seawater; on the contrary, the δ<sup>34</sup>S value of sulfate in the closed system is higher than that of seawater. Therefore, obtaining the isotopic composition of pyrites formed in an open system, which most likely retain microbial sulfur isotope fractionation, is essential to reconstruct the paleo-oceanic sulfur cycle. In this study, we carried out multiple sulfur isotope analyses of CRS and mechanically separated pyrite grains (>100 μm) using a fluorination method, in addition to secondary ion mass spectrometry (SIMS) analyses of in situ δ<sup>34</sup>S values of pyrite grains in drill core samples of Member 3 of the Ediacaran Doushantuo Formation in the Three Gorges area, South China. The isotope fractionation of microbial sulfate reduction (MSR) in the limestone layers of the upper part of Member 3 was calculated to be <sup>34</sup><i>ε</i> = 55.7‰ and <sup>33</sup><i>λ</i> = 0.5129 from the δ<sup>34</sup>S and Δ<sup>33</sup>S' values of medium-sized pyrite grains ranging from 100 to 300 μm and the average δ<sup>34</sup>S and Δ<sup>33</sup>S' values of CAS. Model calculations revealed that the influence of sulfur disproportionation on the δ<sup>34</sup>S values of these medium-sized pyrite grains was insignificant. In contrast, within the dolostone layers of the middle part of Member 3, isotope fractionation was determined to be <sup>34</sup><i>ε</i> = 47.5‰. The <sup>34</sup><i>ε</i> value in the middle part of Member 3 was calculated from the average δ<sup>34</sup>S values of the rim of medium-sized pyrite grains and the average δ<sup>34</sup>S values of CAS. This observation revealed an increase in microbial sulfur isotope fractionation during the Shuram excursion at the drill core site. Furthermore, our investigation revealed correlations between δ<sup>34</sup>S<sub>CRS</sub> values and CRS concentrations and between CRS and TOC concentrations, implying that organic matter load to sediments controlled the δ<sup>34</sup>S<sub>CRS</sub> values rather than oceanic sulfate concentrations. However, these CRS and TOC concentrations are local parameters that can change only at the kilometer scale with local redox conditions and the intensity of primary production. Therefore, the decreasing δ<s
在埃迪卡拉纪舒拉姆偏移期间,沉积硫酸盐(碳酸盐相关硫酸盐:CAS)和硫化物(铬-可还原硫:CRS)的硫同位素组成差异增大,其原因是全球海洋和大气氧化作用导致海洋硫酸盐浓度增加。然而,最近对黄铁矿同位素组成的研究表明,沉积物中的 CRS 具有不同的黄铁矿来源。这些黄铁矿要么形成于水体/浅层沉积物中,该系统对硫酸盐是开放的;要么形成于深层沉积物中,该系统对硫酸盐是封闭的。在开放系统中,硫酸盐的 δ34S 值与海水的硫酸盐值相等;相反,在封闭系统中,硫酸盐的 δ34S 值高于海水的硫酸盐值。因此,获得开放系统中形成的黄铁矿的同位素组成对重建古海洋硫循环至关重要,因为开放系统中很可能保留了微生物的硫同位素分馏。在本研究中,我们采用氟化方法对华南三峡地区埃迪卡拉斗山沱地层第三系钻芯样品中的CRS和机械分离的黄铁矿颗粒(大于100微米)进行了多重硫同位素分析,并对黄铁矿颗粒的原位δ34S值进行了二次离子质谱(SIMS)分析。根据100-300μm中型黄铁矿颗粒的δ34S和Δ33S'值以及CAS的平均δ34S和Δ33S'值,计算出3号上统石灰岩层中微生物硫酸盐还原的同位素分馏为34ε=55.7‰和33λ=0.5129。模型计算显示,硫歧化对这些中等大小黄铁矿晶粒的δ34S值影响不大。与此相反,在成员 3 中部的白云石层中,同位素分馏被确定为 34ε = 47.5‰。根据中型黄铁矿颗粒边缘的平均δ34S值和CAS的平均δ34S值计算出了3号岩层中部的34ε值。这一观察结果表明,在舒拉姆偏移期间,钻芯地点的微生物硫同位素分馏增加了。此外,我们的调查还发现,δ34SCRS 值与 CRS 浓度之间以及 CRS 与 TOC 浓度之间存在相关性,这意味着沉积物中的有机质负荷控制着δ34SCRS 值,而不是海洋硫酸盐浓度。然而,这些 CRS 和 TOC 浓度是局部参数,只能在千米尺度上随着局部氧化还原条件和初级生产强度的变化而变化。因此,δ34SCRS 值的下降可能是当地氧化还原条件造成的,而不是全球海洋硫酸盐浓度增加的结果。
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引用次数: 0
A Spatially Restricted Distribution of Thermophilic Endospores in Laptev Sea Shelf Sediments Suggests a Limited Dispersal by Local Geofluids 拉普捷夫海大陆架沉积物中嗜热内生孢子的空间限制性分布表明当地地质流体的传播有限
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-09-11 DOI: 10.1111/gbi.12618
Emelie Ståhl, Anna Linderholm, Volker Brüchert

Thermospores, the dormant resting stages of thermophilic bacteria, have been shown to be frequent but enigmatic components of cold marine sediments around the world. Multiple hypotheses have been proposed to explain their distribution, emphasizing their potential as model organisms for studying microbial dispersal via ocean currents. In the Arctic Ocean, the abundance and diversity of thermospores have previously been assumed to be low. However, this assessment has been based on data mainly from the western fjords of Svalbard, thus leaving most of the Arctic unexplored. Here, we expand the knowledge about the distribution of thermospores in the Arctic Ocean by investigating the abundance and diversity of thermospores in heated shelf sediments from three sites in the outer Laptev Sea. Two of the sites are located in an area with methane-emitting cold seeps with a thermogenic source signature suggestive of an origin in a deep hydrocarbon reservoir, while the third site is a reference site not known to be impacted by seepage. We found that activity of viable thermospore populations was more prominent at one of the investigated seep sites. This finding is supported by both radiotracer growth experiments showing thermophilic, sulfate-reducing activity triggered by heating, as well as 16S gene sequence analyses showing significantly enriched ASVs affiliated to the phylum Firmicutes following high-temperature incubations. An enrichment of the sulfate-reducing, endospore-forming class Desulfotomaculia in heated samples compared to unheated samples was also observed. Furthermore, several ASVs identified at the seep site are closely related to thermospore-producing bacteria associated with the deep biosphere, including hydrocarbon and hydrothermal systems. Based on the combined information from induced activity, estimated abundance, and phylogenetic composition using 16S rRNA gene sequencing, we propose likely source environments and dispersal vectors for thermospores in the Arctic Ocean.

热孢子是嗜热细菌的休眠静止阶段,已被证明是世界各地寒冷海洋沉积物中经常出现的神秘成分。人们提出了多种假说来解释它们的分布,强调了它们作为研究微生物通过洋流扩散的模式生物的潜力。在北冰洋,热孢子的丰度和多样性以前一直被认为很低。然而,这种评估主要基于斯瓦尔巴群岛西部峡湾的数据,因此北极大部分地区尚未被探索。在这里,我们通过研究拉普捷夫海外海三个地点的加热陆架沉积物中热孢子的丰度和多样性,扩大了对北冰洋热孢子分布的了解。其中两个地点位于有甲烷排放冷渗漏的区域,其热源特征表明该渗漏源于深层碳氢化合物储层,而第三个地点则是一个参考地点,没有受到渗漏的影响。我们发现,有活力的热孢子种群的活动在其中一个调查过的渗漏点更为突出。这一发现得到了放射性示踪剂生长实验的支持,实验显示加热会引发嗜热的硫酸盐还原活动,16S 基因序列分析也显示高温培养后属于真菌门的 ASVs 显著富集。与未加热的样本相比,加热样本中富含硫酸盐还原、内生孢子形成类 Desulfotomaculia。此外,在渗漏点发现的几种 ASV 与深层生物圈(包括碳氢化合物和热液系统)中产生热孢子的细菌密切相关。根据诱导活动、估计丰度和使用 16S rRNA 基因测序的系统发育组成等综合信息,我们提出了北冰洋热孢子的可能来源环境和传播载体。
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引用次数: 0
Significance of lignin and fungal markers in the Devonian (407 Ma) Rhynie Chert 泥盆纪(407Ma)Rhynie Chert 中木质素和真菌标记的意义。
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-08-20 DOI: 10.1111/gbi.12616
Alex I. Holman, Stephen F. Poropat, Paul F. Greenwood, Rajendra Bhandari, Madison Tripp, Peter Hopper, Arndt Schimmelmann, Luke Brosnan, William D. A. Rickard, Klaus Wolkenstein, Kliti Grice

The Rhynie Chert (Lower Devonian, Scotland) hosts a remarkably well-preserved early terrestrial ecosystem. Organisms including plants, fungi, arthropods, and bacteria were rapidly silicified due to inundation by silica-rich hot spring fluids. Exceptional molecular preservation has been noted by many authors, including some of the oldest evidence of lignin in the fossil record. The evolution of lignin was a critical factor in the diversification of land plants, providing structural support and defense against herbivores and microbes. However, the timing of the evolution of lignin decay processes remains unclear. Studies placing this event near the end of the Carboniferous are contradicted by evidence for fungal pathogenesis in Devonian plant fossils, including from the Rhynie Chert. We conducted organic geochemical analyses on a Rhynie Chert sample, including hydropyrolysis (HyPy) of kerogen and high-resolution mass spectrometric mapping of a thin section, to elucidate the relationship between lignin and the potential fungal marker perylene. HyPy of kerogen showed an increase in relative abundance of perylene supporting its entrapment within the silicate matrix of the chert. Lignin monomers were isolated through an alkaline oxidation process, showing a distribution dominated by H-type monomers. G- and S-type monomers were also detected, preserved by rapid silicification. Polycyclic aromatic hydrocarbons including perylene, a known marker for lignin-degrading fungi, were also concentrated in the kerogen and found to be localized within silicified plant fragments. Our results strongly link perylene in the Rhynie Chert to the activity of phytopathogenic fungi, demonstrating the importance of fungal degradation processes as far back as the Early Devonian.

雷尼石器(苏格兰下泥盆纪)拥有一个保存完好的早期陆地生态系统。植物、真菌、节肢动物和细菌等生物在富含二氧化硅的温泉流体的淹没下迅速硅化。许多学者都注意到了这种特殊的分子保存方式,其中包括化石记录中一些最古老的木质素证据。木质素的进化是陆地植物多样化的一个关键因素,它提供了结构支持并抵御食草动物和微生物。然而,木质素衰变过程的演化时间仍不清楚。有研究将这一事件的发生时间推定在石炭纪末期,但泥盆纪植物化石(包括来自莱尼石器的化石)中真菌致病的证据却与此相矛盾。我们对 Rhynie Chert 样品进行了有机地球化学分析,包括角质层的水解(HyPy)和薄片的高分辨率质谱绘图,以阐明木质素与潜在的真菌标记过烯之间的关系。角质层的 HyPy 显示,过辉石的相对丰度增加,这证明过辉石被困在石灰岩的硅酸盐基质中。木质素单体是通过碱性氧化过程分离出来的,其分布以 H 型单体为主。此外还检测到 G 型和 S 型单体,这些单体通过快速硅化得以保存。多环芳烃(包括已知的木质素降解真菌标记物--过烯)也集中在角质层中,并被发现存在于硅化植物碎片中。我们的研究结果将 Rhynie Chert 中的过烯与植物病原真菌的活动紧密联系在一起,证明了早泥盆世真菌降解过程的重要性。
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引用次数: 0
Controls on authigenic mineralization in experimental Ediacara-style preservation 埃迪卡拉式保存实验中对自生矿化的控制。
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-08-16 DOI: 10.1111/gbi.12615
Silvina Slagter, Kurt O. Konhauser, Derek E. G. Briggs, Lidya G. Tarhan

The earliest evidence of complex macroscopic life on Earth is preserved in Ediacaran-aged siliciclastic deposits as three-dimensional casts and molds, known as Ediacara-style preservation. The mechanisms that led to this extraordinary preservation of soft-bodied organisms in fine- to medium-grained sandstones have been extensively debated. Ediacara-style fossilization is recorded in a variety of sedimentary facies characterized by clean quartzose sandstones (as in the eponymous Ediacara Member) as well as less compositionally mature, clay-rich sandstones and heterolithic siliciclastic deposits. To investigate this preservational process, we conducted experiments using different mineral substrates (quartzose sand, kaolinite, and iron oxides), a variety of soft-bodied organisms (microalgae, cyanobacteria, marine invertebrates), and a range of estimates for Ediacaran seawater dissolved silica (DSi) levels (0.5–2.0 mM). These experiments collectively yielded extensive amorphous silica and authigenic clay coatings on the surfaces of organisms and in intergranular pore spaces surrounding organic substrates. This was accompanied by a progressive drawdown of the DSi concentration of the experimental solutions. These results provide evidence that soft tissues can be rapidly preserved by silicate minerals precipitated under variable substrate compositions and a wide range of predicted scenarios for Ediacaran seawater DSi concentrations. These observations suggest plausible mechanisms explaining how interactions between sediments, organic substrates, and seawater DSi played a significant role in the fossilization of the first complex ecosystems on Earth.

地球上最早的复杂宏观生命证据以三维铸模和模具的形式保存在埃迪卡拉纪硅质沉积物中,即埃迪卡拉式保存。在细粒度到中等粒度的砂岩中保存软体生物的机制引起了广泛的争论。埃迪卡拉式化石被记录在各种沉积面中,这些沉积面的特征是干净的石英质砂岩(如同名的埃迪卡拉成员),以及成分不太成熟、富含粘土的砂岩和杂岩硅质沉积。为了研究这一保存过程,我们使用不同的矿物基质(石英砂、高岭石和氧化铁)、各种软体生物(微藻、蓝藻、海洋无脊椎动物)以及埃迪卡拉海水溶解硅(DSi)水平的一系列估计值(0.5-2.0 mM)进行了实验。这些实验在生物体表面和有机基质周围的晶间孔隙中共同产生了大量无定形二氧化硅和自生粘土涂层。与此同时,实验溶液中的 DSi 浓度也在逐渐降低。这些结果提供了证据,证明在不同的基质成分和埃迪卡拉海水DSi浓度的多种预测情况下,硅酸盐矿物沉淀可以快速保存软组织。这些观察结果表明,沉积物、有机基质和海水 DSi 之间的相互作用在地球上最早的复杂生态系统化石化过程中发挥了重要作用。
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引用次数: 0
Lateral redox variability in ca. 1.9 Ga marine environments indicated by organic carbon and nitrogen isotope compositions 有机碳和氮同位素组成显示的约 1.9 Ga 海洋环境中的侧向氧化还原变化。
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-08-11 DOI: 10.1111/gbi.12614
Kento Motomura, Andrey Bekker, Minoru Ikehara, Takashi Sano, Ying Lin, Shoichi Kiyokawa

The stepwise oxygenation of Earth's surficial environment is thought to have shaped the evolutionary history of life. Microfossil records and molecular clocks suggest eukaryotes appeared during the Paleoproterozoic, perhaps shortly after the Great Oxidation Episode at ca. 2.43 Ga. The mildly oxygenated atmosphere and surface oceans likely contributed to the early evolution of eukaryotes. However, the principal trigger for the eukaryote appearance and a potential factor for their delayed expansion (i.e., intermediate ocean redox conditions until the Neoproterozoic) remain poorly understood, largely owing to a lack of constraints on marine and terrestrial nutrient cycling. Here, we analyzed redox-sensitive element contents and organic carbon and nitrogen isotope compositions of relatively low metamorphic-grade (greenschist facies) black shales preserved in the Flin Flon Belt of central Canada to examine open-marine redox conditions and biological activity around the ca. 1.9 Ga Flin Flon oceanic island arc. The black shale samples were collected from the Reed Lake area in the eastern part of the Flin Flon Belt, and the depositional site was likely distal from the Archean cratons. The black shales have low Al/Ti ratios and are slightly depleted in light rare-earth elements relative to the post-Archean average shale, which is consistent with a limited contribution from felsic igneous rocks in Archean upper continental crust. Redox conditions have likely varied between suboxic and euxinic at the depositional site of the studied section, as suggested by variable U/Al and Mo/Al ratios. Organic carbon and nitrogen isotope compositions of the black shales are approximately −23‰ and +13.7‰, respectively, and these values are systematically higher than those of broadly coeval continental margin deposits (approximately −30‰ for δ13Corg and +5‰ for δ15Nbulk). These elevated values are indicative of high productivity that led to enhanced denitrification (i.e., a high denitrification rate relative to nitrogen influx at the depositional site). Similar geochemical patterns have also been observed in the modern Peruvian oxygen minimum zone where dissolved nitrogen compounds are actively lost from the reservoir via denitrification and anammox, but the large nitrate reservoir of the deep ocean prevents exhaustion of the surface nitrate pool. Nitrogen must have been widely bioavailable in the ca. 1.9 Ga oceans, and its supply to upwelling zones must have supported habitable environments for eukaryotes, even in the middle of oceans around island arcs.

地球表面环境的逐步富氧被认为塑造了生命的进化史。微化石记录和分子钟显示,真核生物出现在古近纪,也许是在约 2.43 Ga 的大氧化作用之后不久。轻度含氧的大气和表层海洋很可能促进了真核生物的早期进化。然而,人们对真核生物出现的主要诱因及其延迟扩展的潜在因素(即直到新近纪的中间海洋氧化还原条件)仍然知之甚少,这主要是由于缺乏对海洋和陆地营养循环的制约。在这里,我们分析了加拿大中部弗林弗隆带保存的变质程度相对较低(绿泥石面)的黑色页岩的氧化还原敏感元素含量以及有机碳和氮同位素组成,以研究约 1.9 Ga 弗林弗隆带附近的开放海洋氧化还原条件和生物活动。1.9 Ga 的弗林弗隆洋岛弧周围的开放海洋氧化还原条件和生物活动。黑色页岩样本采集自弗林弗隆带东部的里德湖地区,沉积地点很可能远离阿基坦陨石坑。黑色页岩的铝/钛比值较低,轻稀土元素含量也略低于后阿基坦平均页岩,这与阿基坦上部大陆地壳中长石火成岩的贡献有限相一致。研究区段沉积地点的氧化还原条件很可能在亚氧化和氧化还原之间变化,U/Al 和 Mo/Al 比率的变化表明了这一点。黑色页岩的有机碳和氮同位素组成分别约为-23‰和+13.7‰,这些数值系统地高于大致同时期的大陆边缘沉积物(δ13Corg约为-30‰,δ15Nbulk约为+5‰)。这些升高的数值表明,高生产力导致反硝化作用增强(即相对于沉积地点的氮流入量,反硝化率较高)。在现代秘鲁最小含氧区也观察到了类似的地球化学模式,那里的溶解氮化合物通过反硝化作用和anammox作用从储层中积极地流失,但深海的大型硝酸盐储层阻止了地表硝酸盐池的耗竭。在大约 1.9 Ga 的海洋中,氮一定具有广泛的生物可利用性。即使在岛弧周围的海洋中间,氮也一定为真核生物提供了适宜居住的环境。
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引用次数: 0
Featured Cover 精选封面
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-08-01 DOI: 10.1111/gbi.12613

Cover

The cover image is based on the Research Article Pyritic Stromatolites from the Paleoarchean Dresser Formation, Pilbara Craton: Resolving Biogenicity and Hydrothermally Influenced Ecosystem Dynamics by Raphael J. Baumgartner et al., https://doi.org/10.1111/gbi.12610

封面该封面图片根据 Raphael J. Baumgartner 等人的研究文章《皮尔巴拉克拉通古生代德雷斯地层中的黄铁矿叠层石》(Pyritic Stromatolites from the Paleoarchean Dresser Formation, Pilbara Craton:Raphael J. Baumgartner 等人撰写的《解析生物成因和受热液影响的生态系统动力学》,https://doi.org/10.1111/gbi.12610。
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引用次数: 0
Dynamics of the osmotic lysis of mineral protocells and its avoidance at the origins of life 矿物原生细胞的渗透溶解动力学及其在生命起源过程中的避免。
IF 2.7 2区 地球科学 Q2 BIOLOGY Pub Date : 2024-07-17 DOI: 10.1111/gbi.12611
Yang Ding, Silvana S. S. Cardoso, Julyan H. E. Cartwright

The osmotic rupture of a cell, its osmotic lysis or cytolysis, is a phenomenon that active biological cell volume regulation mechanisms have evolved in the cell membrane to avoid. How then, at the origin of life, did the first protocells survive prior to such active processes? The pores of alkaline hydrothermal vents in the oceans form natural nanoreactors in which osmosis across a mineral membrane plays a fundamental role. Here, we discuss the dynamics of lysis and its avoidance in an abiotic system without any active mechanisms, reliant upon self-organized behaviour, similar to the first self-organized mineral membranes within which complex chemistry may have begun to evolve into metabolism. We show that such mineral nanoreactors could function as protocells without exploding because their self-organized dynamics have a large regime in parameter space where osmotic lysis does not occur and homeostasis is possible. The beginnings of Darwinian evolution in proto-biochemistry must have involved the survival of protocells that remained within such a safe regime.

细胞的渗透破裂,即渗透溶解或细胞溶解,是细胞膜中进化出的主动生物细胞体积调节机制所要避免的现象。那么,在生命起源时,第一批原生细胞是如何在这种主动过程之前存活下来的呢?海洋中碱性热液喷口的孔隙形成了天然的纳米反应器,其中矿物膜上的渗透起着根本性的作用。在这里,我们讨论了在一个没有任何主动机制的非生物系统中,依赖自组织行为的溶解动力学及其避免,类似于复杂化学可能已开始进化为新陈代谢的第一种自组织矿物膜。我们的研究表明,这种矿物纳米反应器可以作为原电池而不发生爆炸,因为它们的自组织动力学在参数空间有一个很大的范围,在这个范围内不会发生渗透溶解,而且可以实现平衡。达尔文进化论在原生物化学中的开端肯定涉及到保持在这种安全机制内的原细胞的生存。
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引用次数: 0
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Geobiology
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