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Nanoscale warriors against viral invaders: a comprehensive review of Nanobodies as potential antiviral therapeutics. 对抗病毒入侵者的纳米战士:纳米抗体作为潜在抗病毒疗法的全面回顾。
IF 5.6 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-04-09 DOI: 10.1080/19420862.2025.2486390
Vaishali Verma, Nimisha Sinha, Abhavya Raja

Viral infections remain a significant global health threat, with emerging and reemerging viruses causing epidemics and pandemics. Despite advancements in antiviral therapies, the development of effective treatments is often hindered by challenges, such as viral resistance and the emergence of new strains. In this context, the development of novel therapeutic modalities is essential to combat notorious viruses. While traditional monoclonal antibodies are widely used for the treatment of several diseases, nanobodies derived from heavy chain-only antibodies have emerged as promising "nanoscale warriors" against viral infections. Nanobodies possess unique structural properties that enhance their ability to recognize diverse epitopes. Their small size also imparts properties, such as improved bioavailability, solubility, stability, and proteolytic resistance, making them an ideal class of therapeutics for viral infections. In this review, we discuss the role of nanobodies as antivirals against various viruses. Techniques used for developing nanobodies, delivery strategies are covered, and the challenges and opportunities associated with their use as antiviral therapies are discussed. We also offer insights into the future of nanobody-based antiviral research to support the development of new strategies for managing viral infections.

病毒感染仍然是一个重大的全球健康威胁,新出现和重新出现的病毒造成流行病和大流行。尽管在抗病毒治疗方面取得了进展,但有效治疗的发展往往受到挑战的阻碍,例如病毒耐药性和新菌株的出现。在这种情况下,发展新的治疗方式对于对抗臭名昭著的病毒至关重要。虽然传统的单克隆抗体被广泛用于治疗多种疾病,但从纯重链抗体衍生的纳米体已经成为对抗病毒感染的有希望的“纳米级战士”。纳米体具有独特的结构特性,增强了它们识别不同表位的能力。它们的小尺寸也赋予了诸如提高生物利用度、溶解度、稳定性和蛋白水解抗性等特性,使它们成为病毒感染的理想治疗药物。在这篇综述中,我们讨论了纳米体作为抗病毒药物对各种病毒的作用。用于开发纳米体的技术,递送策略被覆盖,并与它们作为抗病毒疗法的使用相关的挑战和机遇进行了讨论。我们还提供了基于纳米体的抗病毒研究的未来见解,以支持开发管理病毒感染的新策略。
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引用次数: 0
Development of potent humanized TNFα inhibitory nanobodies for therapeutic applications in TNFα-mediated diseases. 强效人源化TNFα抑制纳米体在TNFα介导疾病治疗中的应用
IF 5.6 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-05-14 DOI: 10.1080/19420862.2025.2498164
Tao Yin, Aubin Ramon, Matthew Greenig, Pietro Sormanni, Luciano D'Adamio

Tumor necrosis factor-alpha (TNFα) is a key pro-inflammatory cytokine implicated in the pathogenesis of numerous inflammatory and autoimmune diseases, including rheumatoid arthritis, inflammatory bowel disease, and neurodegenerative disorders such as Alzheimer's disease. Effective inhibition of TNFα is essential for mitigating disease progression and improving patient outcomes. In this study, we present the development and comprehensive characterization of potent humanized TNFα inhibitory nanobodies (TNFI-Nbs) derived from camelid single-domain antibodies. In silico analysis of the original camelid nanobodies revealed low immunogenicity, which was further reduced through machine learning-guided humanization and developability optimization. The two humanized TNFI-Nb variants we developed demonstrated high anti-TNFα activity, achieving IC₅₀ values in the picomolar range. Binding assays confirmed their high affinity for TNFα, underscoring robust neutralization capabilities. These TNFI-Nbs present valid alternatives to conventional monoclonal antibodies currently used in human therapy, offering potential advantages in potency, specificity, and reduced immunogenicity. Our findings establish a solid foundation for further preclinical development and clinical translation of TNFα-targeted nanobody therapies in TNFα-mediated diseases.

肿瘤坏死因子- α (TNFα)是一种关键的促炎性细胞因子,与许多炎症和自身免疫性疾病的发病机制有关,包括类风湿关节炎、炎症性肠病和神经退行性疾病如阿尔茨海默病。有效抑制TNFα对于缓解疾病进展和改善患者预后至关重要。在这项研究中,我们介绍了从骆驼单域抗体中提取的强效人源化TNFα抑制纳米体(TNFI-Nbs)的开发和综合表征。原始骆驼纳米体的硅分析显示免疫原性较低,通过机器学习引导的人源化和可发展性优化进一步降低了免疫原性。我们开发的两种人源化TNFI-Nb变体显示出高的抗tnf α活性,实现了IC₅0在皮摩尔范围内的值。结合实验证实了它们对TNFα的高亲和力,强调了强大的中和能力。这些TNFI-Nbs是目前用于人类治疗的传统单克隆抗体的有效替代品,在效力、特异性和降低的免疫原性方面具有潜在优势。我们的研究结果为tnf α靶向纳米体治疗tnf α介导疾病的进一步临床前开发和临床转化奠定了坚实的基础。
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引用次数: 0
Advancing large-molecule discovery with a unified digital platform for data analysis and workflow management. 通过数据分析和工作流管理的统一数字平台推进大分子发现。
IF 7.3 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-09-14 DOI: 10.1080/19420862.2025.2555346
Eriberto Natali, Jana Hersch, Christoph Freiberg, Stephan Steigele

The repertoire of large-molecule treatments continues to expand, resulting in diverse discovery and development workflows. This diversity yields a proliferation of software solutions and procedures for molecule registration, material tracking, experiment planning, data analytics, quality control, data sharing, and decision-making. Contrasting with this manual, labor intensive, and error-prone approach, we introduce the concept of a transformative solution: an integrated platform that translates this complexity into a harmonized, open architecture encompassing all workflows and hardware systems, covering the discovery process up to developability assessment. The benefits and complexities of such a platform are evident in examples spanning different use cases and maturity levels, such as developing multi-specific antibodies and antibody-drug conjugates using shared workflows or incorporating artificial intelligence for predictive and generative tasks. This review outlines state-of-the-art concepts behind a digital platform for automating and streamlining the discovery of new large-molecule treatments.

大分子疗法的应用范围不断扩大,导致发现和开发工作流程的多样化。这种多样性产生了大量的软件解决方案和程序,用于分子注册、材料跟踪、实验计划、数据分析、质量控制、数据共享和决策。与这种手工的、劳动密集型的、容易出错的方法相比,我们引入了一个转换解决方案的概念:一个集成的平台,它将这种复杂性转化为一个协调的、开放的体系结构,它包含了所有的工作流和硬件系统,涵盖了从发现过程到可开发性评估。在跨越不同用例和成熟度级别的示例中,这种平台的好处和复杂性是显而易见的,例如使用共享工作流开发多特异性抗体和抗体-药物缀合物,或者将人工智能用于预测和生成任务。这篇综述概述了自动化和简化新大分子治疗发现的数字平台背后最先进的概念。
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引用次数: 0
Nipocalimab, an immunoselective FcRn blocker that lowers IgG and has unique molecular properties. Nipocalimab是一种免疫选择性FcRn阻滞剂,可降低IgG,具有独特的分子特性。
IF 5.6 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-02-12 DOI: 10.1080/19420862.2025.2461191
Nilufer P Seth, Rui Xu, Matthew DuPrie, Amit Choudhury, Samuel Sihapong, Steven Tyler, James Meador, William Avery, Edward Cochran, Thomas Daly, Julia Brown, Laura Rutitzky, Lynn Markowitz, Sujatha Kumar, Traymon Beavers, Sayak Bhattacharya, Hsin Chen, Viraj Parge, Karen Price, Yang Wang, Siddharth Sukumaran, Yvonne Pao, Katie Abouzahr, Fiona Elwood, Jay Duffner, Sucharita Roy, Pushpa Narayanaswami, Jonathan J Hubbard, Leona E Ling

Nipocalimab is a human immunoglobulin G (IgG)1 monoclonal antibody that binds to the neonatal Fc receptor (FcRn) with high specificity and high affinity at both neutral (extracellular) and acidic (intracellular) pH, resulting in the reduction of circulating IgG levels, including those of pathogenic IgG antibodies. Here, we present the molecular, cellular, and nonclinical characteristics of nipocalimab that support the reported clinical pharmacology and potential clinical application in IgG-driven, autoantibody- and alloantibody-mediated diseases. The crystal structure of the nipocalimab antigen binding fragment (Fab)/FcRn complex reveals its binding to a unique epitope on the IgG binding site of FcRn that supports the observed pH-independent high-binding affinity to FcRn. Cell-based and in vivo studies demonstrate concentration/dose- and time-dependent FcRn occupancy and IgG reduction. Nipocalimab selectively reduces circulating IgG levels without detectable effects on other adaptive and innate immune functions. In vitro experiments and in vivo studies in mice and cynomolgus monkeys generated data that align with observations from clinical studies of nipocalimab in IgG autoantibody- and alloantibody-mediated diseases.

Nipocalimab是一种人免疫球蛋白G (IgG)1单克隆抗体,在中性(细胞外)和酸性(细胞内)pH下与新生儿Fc受体(FcRn)结合,具有高特异性和高亲和力,导致循环IgG水平降低,包括致病性IgG抗体。在这里,我们提出了nipocalimab的分子、细胞和非临床特征,支持已报道的临床药理学和潜在的临床应用,用于igg驱动的、自身抗体和同种抗体介导的疾病。nipocalimab抗原结合片段(Fab)/FcRn复合物的晶体结构揭示了它与FcRn IgG结合位点上的一个独特表位的结合,这支持了所观察到的与FcRn的ph无关的高结合亲和力。基于细胞和体内的研究表明,FcRn占用和IgG减少与浓度/剂量和时间有关。Nipocalimab选择性降低循环IgG水平,对其他适应性和先天免疫功能无明显影响。在小鼠和食蟹猴的体外实验和体内研究中产生的数据与nipocalimab在IgG自身抗体和同种抗体介导的疾病中的临床研究观察结果一致。
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引用次数: 0
Folate receptor alpha for cancer therapy: an antibody and antibody-drug conjugate target coming of age. 用于癌症治疗的叶酸受体:一种成熟的抗体和抗体-药物偶联靶标。
IF 5.6 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-03-05 DOI: 10.1080/19420862.2025.2470309
Yi Liu, Xinyi Chen, Theodore Evan, Benjamina Esapa, Alicia Chenoweth, Anthony Cheung, Sophia N Karagiannis

Folate receptor alpha (FRα) has long been the focus of therapeutics development in oncology across several solid tumors, notably ovarian, lung, and subsets of breast cancers. Its multiple roles in cellular metabolism and carcinogenesis and tumor-specific overexpression relative to normal tissues render FRα an attractive target for biological therapies. Here we review the biological significance, expression distribution, and characteristics of FRα as a highly promising and now established therapy target. We discuss the ongoing development of FRα-targeting antibodies and antibody-drug conjugates (ADCs), the first of which has been approved for the treatment of ovarian cancer, providing the impetus for heightened research and therapy development. Novel insights into the tumor microenvironment, advances in antibody engineering to enhance immune-mediated effects, the emergence of ADCs, and several studies of anti-FRα agents combined with chemotherapy, targeted and immune therapy are offering new perspectives and treatment possibilities. Hence, we highlight key translational research and discuss several preclinical studies and clinical trials of interest, with an emphasis on agents and therapy combinations with potential to change future clinical practice.

叶酸受体α (FRα)长期以来一直是肿瘤治疗发展的焦点,涉及多种实体肿瘤,特别是卵巢癌、肺癌和乳腺癌亚群。与正常组织相比,FRα在细胞代谢和致癌以及肿瘤特异性过表达中的多重作用使其成为生物治疗的一个有吸引力的靶点。本文综述了FRα作为一种非常有前途的治疗靶点的生物学意义、表达分布和特征。我们讨论了正在进行的fr α-靶向抗体和抗体-药物偶联物(adc)的发展,其中第一个已被批准用于治疗卵巢癌,为进一步的研究和治疗开发提供了动力。对肿瘤微环境的新认识、增强免疫介导效应的抗体工程的进展、adc的出现以及抗fr α药物联合化疗、靶向和免疫治疗的一些研究提供了新的视角和治疗可能性。因此,我们强调了关键的转化研究,并讨论了一些感兴趣的临床前研究和临床试验,重点是有可能改变未来临床实践的药物和治疗组合。
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引用次数: 0
Improving dual targeting selectivity in T-cell engagers via synapse-gated and affinity-tuned trispecific antibody design. 通过突触门控和亲和调节三特异性抗体设计改善t细胞接合体的双重靶向选择性。
IF 7.3 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-10-08 DOI: 10.1080/19420862.2025.2570748
Peng Zhao, John Schardt, Chi-I Chiang, Pooja Shah, Gee Sung Eun, Jan Martinek, Matthew Cyr, Yoshimi Johnson, Bismark Amofah, Xiaoying Ye, Samuel Edwards, Xiaoru Chen, Mark Penney, Wenhai Liu, Chunning Yang, Keith Rickert, Amber Lee, Sterling Payne, Hanzhi Zhang, Garrett Kelly, Chunlei Wang, Allison Gerber, Kathy Mulgrew, Rajat Varma, Jonathan Boyd, Xiuling Li, John D Bagert, Even Walseng, Yariv Mazor

T-cell engagers (TCEs) represent a powerful drug modality for redirecting a patient's own T cells to recognize and eradicate cancer cells. Although TCEs have been effective in treating hematological cancers, their broad application for solid tumors has been more challenging due to the absence of tumor-specific antigens. This often leads to on-target, off-tumor toxicities and a low therapeutic index (TI). Strategies for dual-antigen targeting of double-positive cancer cells over single-positive normal tissue may improve the TI of TCEs. In this study, we report the development and characterization of a conditional dual tumor-associated antigen (TAA)-targeting trispecific antibody (TriMab) TCE composed of a non-active anchoring arm (i.e. anti-TAA1), deficient in mediating an active immunological synapse, and an affinity-tuned active arm (i.e. anti-TAA2), paired with an anti-CD3 domain to drive AND-gated targeting and elimination of dual-TAA tumors while sparing single-TAA healthy cells. Using an anti-receptor tyrosine kinase-like orphan receptor 1 (ROR1) mAb as a proof-of-concept anchoring arm and an array of affinity-modulated variants of the anti-epidermal growth factor receptor (EGFR) GA201 mAb as active arms, we show in vitro conditional engagement and elimination of double-positive human NCI-H358 non-small cell lung cancer cells over single-positive, non-target NCI-H358.ROR1.KO cells by affinity-modulated TriMab TCEs. In vivo, the TriMab TCE exhibits selective targeting and eradication of ROR1/EGFR double-positive tumors in a mouse xenograft model. We further demonstrate the generality of the anchoring arm in TriMab using anti-HER2 mAbs targeting different binding epitopes and discuss the interplay of factors regulating immunological synapse formation. Lastly, we demonstrate that the TriMab modality exhibits a favorable developability profile and mAb-like pharmacokinetic properties in human neonatal Fc receptor transgenic mice. Overall, this work presents a generalizable approach to utilizing the TriMab modality by leveraging avidity effects and molecular geometry to achieve conditional AND-gated dual TAA-targeting with a significantly improved TI.

T细胞接合剂(TCEs)代表了一种强大的药物模式,可以重新引导患者自身的T细胞识别和根除癌细胞。虽然tce在治疗血液学癌症方面是有效的,但由于缺乏肿瘤特异性抗原,其在实体肿瘤中的广泛应用更具挑战性。这通常导致靶向、非肿瘤毒性和低治疗指数(TI)。双抗原靶向双阳性癌细胞在单阳性正常组织上的策略可能改善tce的TI。在这项研究中,我们报道了一种条件双肿瘤相关抗原(TAA)靶向三特异性抗体(TriMab) TCE的开发和特性,该抗体由一个非活性锚定臂(即抗taa1)组成,缺乏介导活性免疫突触,以及一个亲和力调节的活性臂(即抗taa2),与一个抗cd3结构域配对,驱动and门控靶向和消除双TAA肿瘤,同时保留单TAA健康细胞。使用抗酪氨酸激酶样孤儿受体1 (ROR1)单抗作为概念验证的锚定臂,使用一系列亲和调节的抗表皮生长因子受体(EGFR) GA201单抗作为活性臂,我们在体外条件地结合和消除了双阳性的人NCI-H358非小细胞肺癌细胞,而不是单阳性的非靶标NCI-H358。亲和调节的TriMab tce对KO细胞的影响。在体内,TriMab TCE在小鼠异种移植模型中表现出选择性靶向和根除ROR1/EGFR双阳性肿瘤。我们利用靶向不同结合表位的抗her2单抗进一步证明了TriMab中锚定臂的普遍性,并讨论了调节免疫突触形成的因素之间的相互作用。最后,我们证明了TriMab模式在人类新生Fc受体转基因小鼠中具有良好的可发展性和单克隆抗体样药代动力学特性。总的来说,这项工作提出了一种利用TriMab模式的通用方法,通过利用贪婪效应和分子几何来实现条件和门控双taa靶向,并显着改善TI。
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引用次数: 0
Identification of engineered IMGT Fc variants in IMGT/mAb-DB, a database of therapeutic antibodies and fusion proteins. 在治疗性抗体和融合蛋白数据库IMGT/mAb-DB中鉴定工程化的IMGT Fc变体。
IF 7.3 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-11-27 DOI: 10.1080/19420862.2025.2594260
Taciana Manso, Gaoussou Sanou, Christos Nousias, Imene Maalem, François Boutin, Véronique Giudicelli, Patrice Duroux, Marie-Paule Lefranc, Sofia Kossida

Monoclonal antibodies (mAbs) and fusion proteins for immune applications (FPIA) play a crucial role in treating autoimmune diseases and cancers by targeting cell-surface proteins and triggering multiple immune mechanisms. These functions are mediated by the crystallizable fragment (Fc) region of mAbs and fusion proteins, whose interaction with Fc gamma receptors (FcγRs) can be modulated through Fc amino acid (AA) engineering. To aid research in this area, we developed the IMGT/FcVariantsExplorer tool (https://www.imgt.org/fcvariantsexplorer/) to identify engineered AA changes or variants within the Fc region in mAb and fusion proteins sequences from IMGT/2Dstructure-DB, the AA sequence database of IMGT®, the international ImMunoGeneTics information system®. We used the IMGT® nomenclature of engineered Fc variants involved in antibody effector properties and formats, applying a standardized classification in five categories: 'Effector,' 'Half-life,' 'Physicochemical properties,' 'Structure,' and 'Hybrid.' We analyzed sequences from 1,107 mAbs and fusion proteins, identifying 483 entries with Fc AA changes, resulting in 211 unique Fc variants in the dataset. We also used web scraping to retrieve associated biological data from literature. All data have been integrated into IMGT/mAb-DB, with links to sequences in IMGT/2Dstructure-DB, enabling users to query Fc variants by their 'Category' or 'Effect.' This curated dataset reveals key trends in antibody engineering.

单克隆抗体(mab)和免疫应用融合蛋白(FPIA)通过靶向细胞表面蛋白和触发多种免疫机制,在治疗自身免疫性疾病和癌症中起着至关重要的作用。这些功能是由单克隆抗体和融合蛋白的可结晶片段(Fc)区介导的,其与Fcγ受体(Fcγ rs)的相互作用可以通过Fc氨基酸(AA)工程调节。为了帮助这一领域的研究,我们开发了IMGT/FcVariantsExplorer工具(https://www.imgt.org/fcvariantsexplorer/),用于从IMGT®(国际免疫遗传学信息系统®)的AA序列数据库IMGT/2Dstructure-DB中识别mAb和融合蛋白序列中Fc区域的工程AA变化或变异。我们使用了涉及抗体效应特性和格式的工程Fc变体的IMGT®命名法,应用五类标准分类:“效应”,“半衰期”,“物理化学特性”,“结构”和“杂交”。我们分析了来自1107个单克隆抗体和融合蛋白的序列,确定了483个具有Fc AA变化的条目,在数据集中产生了211个独特的Fc变体。我们还使用网络抓取从文献中检索相关的生物学数据。所有数据都已集成到IMGT/mAb-DB中,并链接到IMGT/2Dstructure-DB中的序列,使用户能够通过“类别”或“效果”查询Fc变体。这个精心整理的数据集揭示了抗体工程的关键趋势。
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引用次数: 0
Engineered ipilimumab variants that bind human and mouse CTLA-4. 结合人和小鼠CTLA-4的工程易普利姆单抗变体。
IF 5.6 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-01-24 DOI: 10.1080/19420862.2025.2451296
Brett Robison, S J Diong, Anusha Kumar, Thomas M Moon, Olin Chang, Bryant Chau, Christine Bee, Ishita Barman, Arvind Rajpal, Alan J Korman, Sean West, Pavel Strop, Peter S Lee

Testing of candidate monoclonal antibody therapeutics in preclinical models is an essential step in drug development. Identification of antibody therapeutic candidates that bind their human targets and cross-react to mouse orthologs is often challenging, especially for targets with low sequence homology. In such cases, surrogate antibodies that bind mouse orthologs must be used. The antibody 9D9, which binds mouse CTLA-4, is a commonly used surrogate for CTLA-4 checkpoint blockade studies in mouse cancer models. In this work, we reveal that 9D9 has significant biophysical dissimilarities to therapeutic CTLA-4 antibodies. The 9D9-mCTLA4 complex crystal structure was determined and shows that the surrogate antibody binds an epitope distinct from ipilimumab and tremelimumab. In addition, while ipilimumab has pH-independent binding to hCTLA-4, 9D9 loses binding to mCTLA-4 at physiologically relevant acidic pH ranges. We used phage and yeast display to engineer ipilimumab to bind mouse CTLA-4 with single-digit nM affinity from an initial state with no apparent binding. The engineered variants showed pH-independent and cross-reactive binding to both mouse and human CTLA-4. Crystal structures of a variant in complex with both mouse and human CTLA-4 confirmed that it targets an equivalent epitope as ipilimumab. These cross-reactive ipilimumab variants may facilitate improved translatability and future mechanism-of-action studies for anti-CTLA-4 targeting in murine models.

在临床前模型中测试候选单克隆抗体疗法是药物开发的重要步骤。鉴定结合人类靶点并与小鼠同源物交叉反应的候选抗体通常具有挑战性,特别是对于低序列同源性的靶点。在这种情况下,必须使用与小鼠同源物结合的替代抗体。结合小鼠CTLA-4的抗体9D9是在小鼠癌症模型中CTLA-4检查点阻断研究中常用的替代物。在这项工作中,我们发现9D9与治疗性CTLA-4抗体具有显著的生物物理差异。测定了9D9-mCTLA4复合物的晶体结构,并表明该替代抗体结合了不同于ipilimumab和tremelimumab的表位。此外,虽然ipilimumab与hCTLA-4具有pH独立的结合,但9D9在生理相关的酸性pH范围内失去与mCTLA-4的结合。我们使用噬菌体和酵母展示来设计ipilimumab,使其从初始状态结合小鼠CTLA-4,具有个位数nM亲和力,没有明显的结合。工程变异体与小鼠和人CTLA-4均表现出ph无关和交叉反应性结合。小鼠和人CTLA-4复合物的一种变体的晶体结构证实,它靶向与伊匹单抗相同的表位。这些交叉反应的易普利姆单抗变体可能有助于提高小鼠模型中抗ctla -4靶向的可翻译性和未来的作用机制研究。
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引用次数: 0
The nonglycosylated variant in therapeutic monoclonal antibodies preferentially forms large aggregates under typical thermal stresses used in forced degradation studies. 治疗性单克隆抗体的非糖基化变体在强制降解研究中使用的典型热应力下优先形成大聚集体。
IF 7.3 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-08-10 DOI: 10.1080/19420862.2025.2543768
Gao-Yuan Liu, Jenny Kim Kim, Shuli Tang, Yuetian Yan, Mandi Hopkins, Dalia Laredo, Teng-Chieh Yang, James Mutino, Douglas E Kamen, Kenneth S Graham, Mohammed Shameem, Shunhai Wang, Ning Li

Monoclonal antibodies (mAbs) feature a conserved N-linked glycosylation site in the CH2 domain, which exhibits heterogeneities in both occupancy and glycan structures. Previous studies have suggested that the unoccupied (nonglycosylated) variant exhibits decreased thermal stability, potentially impacting the overall stability of mAb products. This hypothesis, however, has remained largely unconfirmed, due to the low abundance of nonglycosylated variants in typical mAb products and the lack of effective analytical tools for detailed characterization of large aggregates with glycoform-specific information. Here, we used a postcolumn denaturation-assisted size exclusion chromatography mass spectrometry technique (SEC-PCD-MS) to reevaluate the effects of the nonglycosylated mAb variant on the thermal stability of mAb drugs during forced degradation studies. Our findings confirmed the compromised thermal stability of the nonglycosylated variant and its increased propensity to form large aggregates at elevated temperatures relevant to mAb-forced degradation studies. We also showed that this thermal stress-induced, nonglycosylation-mediated aggregation pathway could be widely observed in a diverse group of mAb molecules with varying properties. This study offers valuable insights into the rationale of selecting the appropriate temperature for mAb-forced degradation studies and highlights key considerations for data interpretation.

单克隆抗体(mab)在CH2结构域具有一个保守的n -链糖基化位点,其占有和糖基结构均具有异质性。先前的研究表明,未占据(非糖基化)的变体表现出较低的热稳定性,可能影响单抗产品的整体稳定性。然而,这一假设在很大程度上仍未得到证实,因为在典型的单抗产品中,非糖基化变体的丰度很低,而且缺乏有效的分析工具来详细表征具有糖型特异性信息的大聚集体。在这里,我们使用柱后变性辅助尺寸排除色谱-质谱技术(SEC-PCD-MS)重新评估非糖基化mAb变体在强制降解研究中对mAb药物热稳定性的影响。我们的研究结果证实了非糖基化变体的热稳定性受到损害,并且在与单克隆抗体强制降解研究相关的高温下形成大聚集体的倾向增加。我们还发现,这种热应力诱导的、非糖基化介导的聚集途径可以在不同性质的mAb分子中广泛观察到。这项研究为选择合适温度进行单克隆抗体强制降解研究的基本原理提供了有价值的见解,并强调了数据解释的关键考虑因素。
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引用次数: 0
Computational analysis reveals non-consensus N-glycosylation sequons in antibody Fab region. 计算分析显示抗体Fab区存在非一致的n-糖基化序列。
IF 7.3 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-12-01 Epub Date: 2025-10-15 DOI: 10.1080/19420862.2025.2574406
Baiyu Qiu, Edwin Chen, Tawnya Flick, Simon Letarte

Protein glycosylation at asparagine typically occurs at a consensus motif. However, recent studies have reported instances of N-glycosylation at non-consensus sites, though the mechanisms and implications of these atypical modifications remain unclear. In this study, we identified novel non-consensus N-glycosylation motifs with low glycosylation occupancy in the Fab region of human antibodies. We developed a computational workflow to predict the interaction between non-consensus peptides and the eukaryotic oligosaccharyltransferase (OST) complex. This model was validated through site-directed mutagenesis around the asparagine residue and glycosylation quantification via mass spectrometry. Our results show that glycan occupancy at non-consensus sites can be modulated by mutations that influence OST binding affinity. Pharmacological inhibition of OST activity reduced non-consensus and consensus glycosylation in both Fab and Fc regions. Additionally, we identified new non-consensus glycosylation sites in natural human antibodies, revealing the sequence preferences governing these modifications. These findings provide mechanistic insights into OST sequence specificity and establish a computational and analytical framework for assessing atypical N-glycosylation, aiding glycan profile control in therapeutic antibody development.

天冬酰胺的蛋白糖基化通常发生在一致基序上。然而,最近的研究报道了n-糖基化在非共识位点的实例,尽管这些非典型修饰的机制和含义尚不清楚。在这项研究中,我们在人抗体Fab区发现了新的低糖基化占用的非一致的n-糖基化基序。我们开发了一个计算工作流来预测非共识肽和真核低聚糖转移酶(OST)复合物之间的相互作用。该模型通过围绕天冬酰胺残基的定点诱变和质谱的糖基化定量进行了验证。我们的研究结果表明,聚糖在非共识位点的占用可以通过影响OST结合亲和力的突变来调节。药理抑制OST活性降低了Fab区和Fc区的非共识糖基化和共识糖基化。此外,我们在天然人抗体中发现了新的非共识糖基化位点,揭示了控制这些修饰的序列偏好。这些发现提供了OST序列特异性的机制见解,并建立了评估非典型n -糖基化的计算和分析框架,有助于治疗性抗体开发中的聚糖谱控制。
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mAbs
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