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Classification of Autism Spectrum Disorder Using Edge-Weight Enhanced Graph Attention Network With Multiple Features of Resting-State fNIRS Signals 基于静息态fNIRS信号多特征的边权增强图注意网络的自闭症谱系障碍分类。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-13 DOI: 10.1002/jbio.202500138
Jingwen Cai, Xi Zeng, Jun Li

Functional near-infrared spectroscopy (fNIRS), as a noninvasive brain imaging modality, has shown great potential for autism spectrum disorder (ASD) identification combined with machine learning. In this work, we proposed an ASD identification method using edge-weight enhanced graph attention network (EWE-GAT) with multiple features in resting-state fNIRS signals measured from the bilateral temporal lobes on 22 typically developing (TD) children and 25 children with ASD. Seven features were selected for the EWE-GAT model, including five node features: the coupling between oxygenated hemoglobin (HbO) and deoxygenated hemoglobin (Hb) fluctuations, sample entropy for HbO and Hb, and average resting-state functional connectivity (RSFC) for HbO and Hb of each channel, and two edge features: RSFC between each channel pair for both HbO and Hb. With the proposed method, high accurate classification was achieved with 97.92% accuracy, 100% sensitivity, 96.43% precision, and 98.08% F1 score, outperforming usually used traditional machine learning and convolutional neural network models.

功能近红外光谱(fNIRS)作为一种无创脑成像技术,结合机器学习在自闭症谱系障碍(ASD)识别中显示出巨大的潜力。在这项工作中,我们提出了一种基于边权增强图注意网络(EWE-GAT)的ASD识别方法,该方法结合了22名典型发育(TD)儿童和25名ASD儿童的双侧颞叶静息态fNIRS信号的多个特征。EWE-GAT模型选择了7个特征,包括5个节点特征:氧合血红蛋白(HbO)和脱氧血红蛋白(Hb)波动之间的耦合、HbO和Hb的样本熵、HbO和Hb的平均静息状态功能连接(RSFC); 2个边缘特征:HbO和Hb的每个通道对之间的RSFC。该方法的分类准确率为97.92%,灵敏度为100%,精度为96.43%,F1评分为98.08%,优于传统的机器学习和卷积神经网络模型。
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引用次数: 0
Coherent-Excitation PACT With Frequency-Compensated Reconstruction for High-Contrast Deep-Tissue Imaging 基于频率补偿重建的相干激发PACT用于高对比度深部组织成像。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-13 DOI: 10.1002/jbio.202500175
Ruijie Hou, Jun Ye, Yang Zhang, Feng Hua, Bin Xu, Xuefeng Liu, Muhammad Qasim Mehmood, Jichuan Xiong

Photoacoustic computed tomography (PACT) synergizes optical absorption contrast with ultrasonic resolution for noninvasive biomedical imaging yet faces limitations in signal-to-noise ratio (SNR), resolution, and contrast. This study introduces a coherent-excitation PACT system integrating interferometric optical excitation and Frequency-Compensated Filtered Back Projection (FC-FBP) reconstruction. The proposed method utilizes phase-locked dual-pulse interferometric excitation to amplify photoacoustic emissions; for the isolated chicken heart, the resolution is improved by 7.9% compared to the single-pulse protocol. The FC-FBP algorithm compensates for frequency-dependent acoustic attenuation via depth-adaptive Gaussian filtering, enhancing the projected signal in the target area while suppressing speckle artifacts. Through experimental validation, we confirm that the coherent-excitation scheme enables simultaneous optimization of optical fluence distribution and acoustic coherence; hence, it can be used to resolve previously indistinguishable hemoglobin oxygenation gradients in murine tumor models. This advancement establishes a high-sensitivity PACT framework, showing potential for real-time intraoperative imaging and dynamic metabolic monitoring in clinical applications.

光声计算机断层扫描(PACT)将光学吸收对比度与超声分辨率协同用于无创生物医学成像,但在信噪比(SNR)、分辨率和对比度方面存在局限性。介绍了一种集干涉光激发和频率补偿滤波后投影(FC-FBP)重建于一体的相干激发PACT系统。该方法利用锁相双脉冲干涉激励放大光声发射;对于分离的鸡心脏,与单脉冲方案相比,分辨率提高了7.9%。FC-FBP算法通过深度自适应高斯滤波补偿频率相关的声衰减,增强目标区域的投影信号,同时抑制散斑伪影。通过实验验证,我们证实了相干激励方案可以同时优化光通量分布和声相干性;因此,它可用于解决以前难以区分的小鼠肿瘤模型中的血红蛋白氧化梯度。这一进展建立了一个高灵敏度的PACT框架,显示了在临床应用中实时术中成像和动态代谢监测的潜力。
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引用次数: 0
Curcumin Internalization in Streptococcus mutans Biofilms: A Confocal Microscopy Analysis 变形链球菌生物膜中的姜黄素内化:共聚焦显微镜分析。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-13 DOI: 10.1002/jbio.202500357
Rebeca Vieira de Lima, Bruno Pereira de Oliveira, Francisco Eduardo Gontijo Guimarães, Kate Cristina Blanco, Vanderlei Salvador Bagnato

Streptococcus mutans is one of the main harmful agents to oral health, exhibiting high resistance in its biofilm form. This study evaluated curcumin as a photosensitizer in photodynamic inactivation (PDI), monitoring its internalization time and activity. The biofilm was cultured for 24 h and treated with curcumin activated by two-photon excitation (800 nm). After photodegradation, curcumin continued to penetrate effectively into the biofilms, replacing previously degraded molecules with new ones and constantly generating reactive species (ROS and singlet oxygen) capable of damaging the bacteria. This contrasts with previous studies that reported limitations of natural photosensitizers in this context. Therefore, the principal contribution of this study is the in vitro demonstration of the dynamic efficacy of curcumin in the complex biofilm environment. The use of confocal microscopy was essential to visualize and quantify the effects of curcumin, highlighting its value as an analytical tool in the evaluation of biofilm treatments.

变形链球菌是危害口腔健康的主要病原体之一,其生物膜形态具有较高的耐药性。本研究评估了姜黄素作为光敏剂在光动力失活(PDI)中的作用,监测了其内化时间和活性。生物膜培养24 h,用姜黄素双光子激发(800 nm)处理。在光降解后,姜黄素继续有效地渗透到生物膜中,用新的分子取代先前降解的分子,并不断产生能够破坏细菌的活性物质(ROS和单线态氧)。这与先前报道天然光敏剂在这方面的局限性的研究形成对比。因此,本研究的主要贡献是在体外证明姜黄素在复杂生物膜环境中的动态功效。使用共聚焦显微镜对可视化和量化姜黄素的效果至关重要,突出了其作为评价生物膜处理的分析工具的价值。
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引用次数: 0
Advances in Functional Near-Infrared Spectroscopy: Physical Principles and Expanding Applications in Neuroscience 功能近红外光谱研究进展:物理原理及其在神经科学中的扩展应用。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-12 DOI: 10.1002/jbio.202500147
Mengxiang Chu, Yunxiang Ma, Rumeng Tian, Siyi Liu, Jingjing Yu, Xiaowei He, Hongbo Guo

Functional near-infrared spectroscopy (fNIRS) is an imaging technique that uses near-infrared light to monitor blood oxygen level changes in the cerebral cortex and noninvasively study brain function. This review provides an overview of the expanding applications and physical principles of fNIRS to enhance understanding of its imaging process and promote awareness of its broad applicability and potential. We systematically searched PubMed, Web of Science, and Google Scholar, analyzing studies on fNIRS applications in psychiatry, neurology, education, and multimodal imaging. We also introduce the imaging principles of continuous wave fNIRS, frequency domain fNIRS, time domain fNIRS, and diffuse optical tomography fNIRS (including high-density diffuse optical tomography). These studies have demonstrated the potential of fNIRS technology in measuring cerebral hemodynamics with high temporal and spatial resolution. The results of this review indicate that fNIRS is a versatile neuroimaging tool with great potential in research and clinical applications.

功能近红外光谱(fNIRS)是一种利用近红外光监测大脑皮层血氧水平变化和非侵入性研究大脑功能的成像技术。本文综述了近红外光谱的广泛应用和物理原理,以加深对其成像过程的理解,并提高对其广泛适用性和潜力的认识。我们系统地检索了PubMed、Web of Science和b谷歌Scholar,分析了近红外光谱在精神病学、神经病学、教育和多模态成像方面的应用研究。介绍了连续波fNIRS、频域fNIRS、时域fNIRS和漫射光学层析成像fNIRS(包括高密度漫射光学层析成像)的成像原理。这些研究证明了fNIRS技术在高时间和空间分辨率测量脑血流动力学方面的潜力。结果表明,近红外光谱是一种多功能的神经成像工具,在研究和临床应用中具有很大的潜力。
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引用次数: 0
Peculiarities of Tissue Imaging by SERS Spectroscopy and Fluorescence Tomography Using Gold Nanolabels 利用金纳米标签的SERS光谱和荧光层析成像的组织成像特性。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-12 DOI: 10.1002/jbio.202500033
Andrei I. Demenshin, Maria S. Istomina, Lidia N. Medvedeva, Elena V. Solovyeva

Multimodal imaging agents derived from plasmonic nanoparticles have great potential for medical diagnostics. To date, dual-mode Raman-fluorescence gold-based nanolabels have remained outside conformed in vivo studies. To overcome this lack, gold nanorods coated by a polymer shell with incorporated cyanine 7 and a bimodal optical response were prepared. The study of nanolabels imaging capabilities was performed after their intravenous administration to laboratory mice. Natural biodistribution of the labels was obtained from SERS spectra of tissue sections, fluorescence images of organs, and gold concentrations determined in the digested tissues by ICP-AES. The comparison of distribution diagrams obtained from three techniques revealed that fluorescence tomography gives the underestimated labels content in the spleen, arising as a result of emission self-quenching. The consistency of SERS and ICP-AES results opens up the opportunity to use SERS as a complementary technique to assess semi-quantitative gold nanoparticle distribution in the tissues.

等离子体纳米粒子衍生的多模态显像剂在医学诊断方面具有巨大的潜力。迄今为止,基于金的双模拉曼荧光纳米标签在体内研究中仍未得到证实。为了克服这一缺陷,制备了由含有菁7的聚合物外壳包裹的金纳米棒,并制备了双峰光学响应。在实验室小鼠静脉注射纳米标签后,对其成像能力进行了研究。通过组织切片的SERS光谱、器官的荧光图像和ICP-AES法测定消化组织中的金浓度,获得标记物的自然生物分布。从三种技术获得的分布图的比较显示,荧光断层扫描给出了脾脏中被低估的标签含量,这是由于发射自猝灭引起的。SERS和ICP-AES结果的一致性为使用SERS作为评估组织中半定量金纳米颗粒分布的补充技术提供了机会。
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引用次数: 0
Resolution-Enhanced Mesoscopic Imaging With Cylindrical Lens-Corrected Oblique Plane Light-Sheet Microscopy 分辨率增强介观成像与圆柱透镜校正斜平面光片显微镜。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-10 DOI: 10.1002/jbio.202500262
Yao Zhou, Mengmeng Li, Shimeng Gao, Fenghe Zhong, Peng Fei

Single-objective light sheet fluorescence microscopy (LSFM) excels in high-speed imaging of large samples, but its limited fluorescence collection angle would degrade system resolution due to the fluorescence loss at low magnifications. To address this issue, we introduce a new method using a coaxial modulation module. By combining two sets of cylindrical lenses with the camera's rolling shutter, we achieve 3D imaging with an optimized fluorescence collection angle in low-magnification mode. Compared to advanced single-objective LSFM, our method provides a practical solution for low-NA oblique plane microscopy (NA 0.5) and enhances resolution by ~30% along the light propagation axis. We validated the system's resolution with fluorescent microspheres, achieving sub-micron lateral and sub-cellular axial resolutions. Furthermore, we have demonstrated its feasibility using GFP-labeled neurons and Siha cervical cancer cell samples for cell counting.

单物镜光片荧光显微镜(LSFM)具有高速大样本成像的优点,但其有限的荧光采集角度在低倍率下会造成荧光损失,从而降低系统分辨率。为了解决这个问题,我们引入了一种使用同轴调制模块的新方法。通过将两组圆柱形镜头与相机的滚动快门相结合,我们在低倍率模式下以优化的荧光收集角度实现了3D成像。与先进的单物镜LSFM相比,我们的方法为低NA斜平面显微镜(NA 0.5)提供了实用的解决方案,并将沿光传播轴的分辨率提高了约30%。我们用荧光微球验证了该系统的分辨率,实现了亚微米横向和亚细胞轴向分辨率。此外,我们已经证明了使用gfp标记的神经元和Siha宫颈癌细胞样本进行细胞计数的可行性。
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引用次数: 0
Hyperspectral Imaging for the Differential Diagnosis of Squamous Cell Carcinoma and Keratoacanthoma of the Head and Neck 高光谱成像在头颈部鳞状细胞癌和角棘瘤鉴别诊断中的应用。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-07 DOI: 10.1002/jbio.202500358
Tianyi Hang, Danfeng Fan, Ansheng Jie, Zhengyuan Chen, Xiaoqing Yue, Wei Zhang

Accurate, label-free, non-destructive discrimination between head and neck squamous cell carcinoma (HNSCC) and keratoacanthoma (KA) remains challenging due to their overlapping morphology. We introduce a real-time, end-to-end hyperspectral imaging (HSI) workflow applied to 80 formalin-fixed, paraffin-embedded sections, each sampled with five 50 × 50-pixel ROIs and captured across 400–1000 nm to produce 128-band reflectance cubes. After reflectance calibration, Savitzky–Golay smoothing, and first-derivative preprocessing, a compact one-dimensional convolutional neural network achieved 87% accuracy, 93% sensitivity, 77% specificity, and AUC = 0.85 on a held-out test set. Spectral difference analysis revealed key biomarkers at the hemoglobin Q-band (630 nm) and OH overtone (917.5 nm), corresponding to vascular and extracellular matrix variations. This resource-efficient photonic platform enables rapid, automated “optical biopsy” without exogenous stains, offering scalable adjunctive diagnostics and a clear pathway toward intraoperative tissue classification.

由于头颈部鳞状细胞癌(HNSCC)和角棘瘤(KA)的形态重叠,对它们进行准确、无标记、非破坏性的区分仍然具有挑战性。我们将实时端到端高光谱成像(HSI)工作流程应用于80个福尔马林固定的石蜡包埋切片,每个切片使用5个50 × 50像素的roi进行采样,并在400-1000 nm范围内捕获,以产生128波段的反射立方体。经过反射率校准、Savitzky-Golay平滑和一阶导数预处理,紧凑的一维卷积神经网络在hold -out测试集上获得了87%的准确率、93%的灵敏度、77%的特异性和0.85的AUC。光谱差异分析显示血红蛋白q波段(630 nm)和O波段(917.5 nm)的关键生物标志物对应于血管和细胞外基质的变化。这种资源高效的光子平台可以实现快速、自动化的“光学活检”,无需外源性染色,提供可扩展的辅助诊断和明确的术中组织分类途径。
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引用次数: 0
Feasibility Study of Visible Spectrum as a Tool for Discriminating Urinary Microalbumin 可见光谱鉴别尿微量白蛋白的可行性研究。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-05 DOI: 10.1002/jbio.202500273
Chengbo Yang, Zhilong Cai, Jingjun Wu, Ping Yang, Zhiliang Zhao

This study validated the feasibility of visible spectroscopy in rapidly detecting Urinary Microalbumin (UALB). Based on 127 clinical urine samples, spectra ranging from 400 to 750 nm were collected using a microspectrometer. The successive projections algorithm (SPA) was used to screen for nine wavelengths highly correlated with UALB, and the spectral index (SI) method was fused to construct an m-SPA-SI strategy. The m-SPA-SI was combined with a random forest (RF) model for discriminant analysis. The results showed that the m-SPA-SI6-RF model for low-dimensional spectra exhibited the best performance, with a training accuracy of 100% and improved testing accuracy and sensitivity of 97.37% and 0.9333, respectively. The number of wavelengths was reduced from 457 to 9. Research has confirmed that the combination of low-dimensional spectroscopy and a wavelength selection algorithm can achieve efficient discrimination of UALB, providing a new method for portable screening of diseases such as chronic kidney disease.

本研究验证了可见光谱快速检测尿微量白蛋白(UALB)的可行性。以127份临床尿样为基础,采用微谱仪采集了400 ~ 750 nm的光谱。利用连续投影算法(SPA)筛选与UALB高度相关的9个波长,并融合光谱指数(SI)方法构建m-SPA-SI策略。m-SPA-SI与随机森林(RF)模型相结合进行判别分析。结果表明,m-SPA-SI6-RF模型对低维光谱的训练准确率为100%,测试精度和灵敏度分别提高了97.37%和0.9333。波长数从457个减少到9个。研究证实,将低维光谱与波长选择算法相结合可以实现UALB的高效鉴别,为慢性肾病等疾病的便携式筛查提供了一种新的方法。
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引用次数: 0
Multimodal PAI/OCT Imaging System for Precision Diagnosis and Therapy in Atopic Dermatitis: A Pilot Study 多模态PAI/OCT成像系统用于特应性皮炎的精确诊断和治疗:一项初步研究。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-05 DOI: 10.1002/jbio.202500165
Jiayi Yang, Qi Chen, Chunxiao Li, Jingjuan Shi, Peiru Wang, Xiuli Wang

Atopic dermatitis (AD), a chronic inflammatory skin disorder, faces diagnostic limitations due to subjective clinical assessments. This study introduces an integrated photoacoustic imaging (PAI)/optical coherence tomography (OCT) system for noninvasive, quantitative evaluation of MC903-induced AD-like dermatitis in mice and Crisaborole efficacy. Multimodal imaging demonstrated Crisaborole's suppression of pathological angiogenesis (50.7% fewer vascular junctions, 23% reduced density, 47% shorter vessel length) and tissue remodeling (20% epidermal thinning, 23% signal decline), validated by histopathology. The system captured in vivo dynamic vascular network restructuring and epidermal alterations during AD progression, revealing temporal links between angiogenesis, hyperplasia, and inflammation. PAI/OCT synergistically provides complementary functional-structural biomarkers, advancing precision diagnosis and therapy in AD models. This work pioneers real-time monitoring of AD pathophysiology, supporting clinical translation through quantitative multiparametric characterization for tailored therapeutic strategies.

特应性皮炎(AD)是一种慢性炎症性皮肤病,由于主观临床评估而面临诊断局限性。本研究介绍了一种集成光声成像(PAI)/光学相干断层扫描(OCT)系统,用于无创、定量评估mc903诱导的小鼠ad样皮炎和Crisaborole的疗效。多模式成像显示Crisaborole抑制病理性血管生成(50.7%的血管连接减少,23%的密度降低,47%的血管长度缩短)和组织重塑(20%的表皮变薄,23%的信号下降),经组织病理学证实。该系统捕获了AD进展过程中体内动态血管网络重构和表皮改变,揭示了血管生成、增生和炎症之间的时间联系。PAI/OCT协同提供互补的功能结构生物标志物,推进AD模型的精确诊断和治疗。这项工作开创了实时监测阿尔茨海默病病理生理的先机,通过定量多参数表征为量身定制的治疗策略支持临床翻译。
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引用次数: 0
Influence of Picosecond Laser Process Parameters on the Ablation of Vitro Skin Tissue 皮秒激光工艺参数对体外皮肤组织消融的影响。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-04 DOI: 10.1002/jbio.202500174
Zhan Jinming, Wu Xuefeng, Yang Lijun, Ding Ye, Liu Weiting

Given the demand for ablation treatment using picosecond lasers in medical cosmetology, researchers analyze the degree of thermal damage to skin tissue by combining theoretical modeling with experimental research. The effects of laser scanning speed, number of scans (30–90) and scanning paths on the heat-affected zone, ablation depth, and thermal damage were investigated using one-way analysis of variance. The results show that increasing the scanning speed can reduce the heat-affected zone; the number of repeated scans is positively correlated with the ablation depth; and the concentric circle scanning path can reduce the accumulation of thermal damage compared with linear scanning. On this basis, the optimal combination of process parameters is obtained, with good macroscopic morphology and lower thermal damage than continuous lasers.

针对医学美容对皮秒激光消融治疗的需求,研究人员采用理论建模与实验研究相结合的方法分析皮秒激光对皮肤组织的热损伤程度。采用单因素方差分析研究了激光扫描速度、扫描次数(30-90次)和扫描路径对热影响区、烧蚀深度和热损伤的影响。结果表明:提高扫描速度可以减小热影响区;重复扫描次数与消融深度呈正相关;与线性扫描相比,同心圆扫描路径可以减少热损伤的累积。在此基础上,得到了最佳的工艺参数组合,具有较好的宏观形貌和较低的热损伤。
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引用次数: 0
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Journal of Biophotonics
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