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Neuronal Imaging at 8-Bit Depth to Combine High Spatial and High Temporal Resolution With Acquisition Rates Up To 40 kHz 神经元成像在8位深度结合高空间和高时间分辨率与采集率高达40 kHz。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-10 DOI: 10.1002/jbio.202400513
Fatima Abbas, Ömer Yusuf İpek, Philippe Moreau, Marco Canepari

A challenge in neuroimaging is acquiring frame sequences at high temporal resolution from the largest possible number of pixels. Measuring 1%–10% fluorescence changes normally requires 12-bit or higher bit depth, constraining the frame size allowing imaging in the kHz range. We resolved Ca2+ or membrane potential signals from cell populations or single neurons in brain slices by acquiring fluorescence at 8-bit depth and by binning pixels offline, achieving unprecedented frame sizes at kHz rates. In hippocampal slices stained with the Ca2+ indicator Fluo-4 AM, we resolved transients at 2 kHz from large frames. Along the apical dendrite of a layer-5 pyramidal neuron, we measured Ca2+ signals associated with a back-propagating action potential at 10 kHz. Finally, in the axon initial segment of the same cell type, we recorded an action potential at 40 kHz by voltage-sensitive dye imaging. This approach unlocks the potential for a range of imaging measurements.

从尽可能多的像素中获取高时间分辨率的帧序列是神经成像的一个挑战。测量1%-10%的荧光变化通常需要12位或更高的位深度,这限制了帧大小,允许在kHz范围内成像。我们通过获取8位深度的荧光和离线像素,在脑切片中从细胞群或单个神经元中分离Ca2+或膜电位信号,以kHz速率实现前所未有的帧大小。在用Ca2+指示剂Fluo-4 AM染色的海马切片中,我们从大帧中分辨出2 kHz的瞬态。沿着第5层锥体神经元的顶端树突,我们测量了与10 kHz反向传播动作电位相关的Ca2+信号。最后,在同一细胞类型的轴突起始段,我们用电压敏感染料成像记录了40 kHz的动作电位。这种方法开启了一系列成像测量的潜力。
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引用次数: 0
Ion-Regulated Signal Amplification Optical Microfiber Interferometric DNA Sensor 离子调节信号放大光学微光纤干涉DNA传感器。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-07 DOI: 10.1002/jbio.202400389
Hanglin Lu, Li Yang, Yuanpeng Li, Jian Tang, Laipeng Shao, Kepeng Fu, Jinpeng Wei, Yalan Niu, Juihui Hu

Genetic information sensors play a pivotal role in the biomedical field. The detection of deoxyribonucleic acid (DNA) is achieved experimentally using an optical microfiber interferometric sensor, which operates based on an ion-regulation sensitivity enhancement mechanism. The optical microfiber is fabricated by drawing optical fiber into a diameter of less than 10 μm via the melting and tapering technique. Leveraging the characteristics of monovalent cations can effectively promote the folding of G-rich single-stranded DNA (ssDNA) into stable G-quadruplex structures, enabling the detection of specific sequences of ssDNA at low concentrations. The results show an improvement of the linear detection range by 3 orders of magnitude, and with the introduction of the ion-regulation sensitivity enhancement mechanism, the limit of detection (LOD) value is 1.07 × 10−15 M. This optical microfiber interferometric sensing architecture is characterized by its simplicity and high sensitivity, positioning it as a formidable tool for diverse biosensing and analytical applications.

遗传信息传感器在生物医学领域起着举足轻重的作用。采用基于离子调节灵敏度增强机制的光纤干涉传感器,实验实现了脱氧核糖核酸(DNA)的检测。该超细光纤是通过熔融变细技术将光纤拉细成直径小于10 μm的光纤制成的。利用一价阳离子的特性,可以有效地促进富含g的单链DNA (ssDNA)折叠成稳定的g -四重结构,从而可以在低浓度下检测到ssDNA的特定序列。结果表明,该方法的线性检测范围提高了3个数量级,并引入离子调节灵敏度增强机制,检测限(LOD)值为1.07 × 10-15 M。这种光学微光纤干涉传感结构的特点是其简单和高灵敏度,将其定位为各种生物传感和分析应用的强大工具。
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引用次数: 0
Mueller-Matrix Interferometric Multifractal Scaling of Optically Anisotropic Architectonics of Diffuse Blood Facies: Fundamental and Applied Aspects 弥漫性血相光学各向异性结构的mueller -矩阵干涉多重分形标度:基础与应用
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-06 DOI: 10.1002/jbio.202400412
Yurii Ushenko, Alexander Ushenko, Alexander Dubolazov, Iryna Soltys, Olexandra Litvinenko, Oleh Wanchuliak, Yulia Sarkisova, Ivan Mikirin, Olexander Salega, Jun Zheng, Lin Bin

The article describes a technique for digital holographic reconstruction of complex amplitude fields in diffuse blood facies using laser polarization-interference phase scanning to isolate a single scattered component of the object field. This method serves as the basis for developing algorithms for Mueller-matrix reconstruction of linear and circular birefringence parameters in the polycrystalline architectonics of blood facies. Statistical (central moments of the 1st–4th orders) and multifractal analyses (fractal dimension spectra) are applied to study the optical anisotropy maps of polycrystalline networks during blood dehydration. The study explores a practical application in the differential diagnosis of blood loss volume, identifying higher-order central moments (skewness, kurtosis) as sensitive markers. The method achieved a maximum accuracy of 92.9% in differentiating blood loss volume.

本文介绍了一种利用激光偏振干涉相位扫描分离物体场的单一散射分量的漫射血相复杂振幅场的数字全息重建技术。该方法为开发血液相多晶结构中线性和圆形双折射参数的mueller矩阵重建算法奠定了基础。应用统计(1 -4阶中心矩)和多重分形分析(分维谱)研究了血液脱水过程中多晶网络的光学各向异性图。该研究探讨了在失血量鉴别诊断中的实际应用,确定高阶中心矩(偏度,峰度)作为敏感标记。该方法鉴别失血量的准确率最高可达92.9%。
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引用次数: 0
Integration of Optical Coherence Tomography Images and Real-Life Clinical Data for Deep Learning Modeling: A Unified Approach in Prognostication of Diabetic Macular Edema 整合光学相干断层扫描图像和真实临床数据的深度学习建模:糖尿病黄斑水肿预后的统一方法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-29 DOI: 10.1002/jbio.202400315
Muhammed Enes Atik, İbrahim Kocak, Nihat Sayin, Sadik Etka Bayramoglu, Ahmet Ozyigit

The primary ocular effect of diabetes is diabetic retinopathy (DR), which is associated with diabetic microangiopathy. Diabetic macular edema (DME) can cause vision loss for people with DR. For this reason, deciding on the appropriate treatment and follow-up has a critical role in terms of curing the disease. Current artificial intelligence (AI) approaches focus on OCT images and may ignore clinical, laboratory, and demographic information obtained by the specialist. This study presents a novel deep learning (DL) framework for evaluating the visual outcome of the TREX anti-VEGF intravitreal injection regimen. DL models are trained to extract deep features from OCT and ILM topographic images and the obtained deep features are combined with patients' demographic, clinical, and laboratory findings to predict the direction of the treatment process. When the ResNet-18 network is used, the proposed DL framework is able to predict the prognosis status of patients with the highest accuracy.

糖尿病的主要眼部影响是糖尿病视网膜病变(DR),这与糖尿病微血管病变有关。糖尿病性黄斑水肿(DME)可导致dr患者视力丧失,因此,决定适当的治疗和随访对治疗该疾病具有关键作用。目前的人工智能(AI)方法侧重于OCT图像,可能会忽略专家获得的临床、实验室和人口统计信息。本研究提出了一个新的深度学习(DL)框架,用于评估TREX抗vegf玻璃体内注射方案的视觉效果。DL模型经过训练,从OCT和ILM地形图像中提取深度特征,并将获得的深度特征与患者的人口统计学、临床和实验室结果相结合,以预测治疗过程的方向。当使用ResNet-18网络时,所提出的深度学习框架能够以最高的准确率预测患者的预后状况。
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引用次数: 0
Polarization Imaging Method for Detection of Lung Cancer Based on Symmetrical Single LCVR
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-29 DOI: 10.1002/jbio.202400470
Yuan Song, Danfei Huang, Tianyi Wang, Yi Xie, Dong Song, Jinghui Hong, Yushi Yang, Jiaxuan Yan

Lung cancer ranks among the three most prevalent cancers worldwide. Polarization imaging technology can effectively distinguish between cancerous and normal tissues. The most commonly applied method for cancer detection is the dual-rotating wave plate polarization imaging system (DWRPIS), which is cumbersome and prone to significant error due to 60 mechanical rotations. To address this, our experiment leveraged the stability of the Liquid Crystal Variable Retarder (LCVR) and, based on existing theoretical foundations for simplifying the use of LCVRs, designed a symmetric single-LCVR polarization imaging system (SSLPIS) for the first time to detect lung cancer images. The SSLPIS is easy to operate, completing the entire acquisition process in just 150 s, with effective Mueller matrix imaging and an overall accuracy rate of over 90%, offering a faster and more precise detection method. This new approach provides an innovative pathway for the rapid detection of lung cancer.

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引用次数: 0
Prototype of Implant for Nitric Oxide Release Controlled by Infrared Radiation in Therapeutic Window 在治疗窗口通过红外线辐射控制一氧化氮释放的植入物原型。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-25 DOI: 10.1002/jbio.202400455
Natalia A. Virts, Tatyana Yu. Karogodina, Mikhail A. Panfilov, Alexey Yu. Vorob'ev, Alexander E. Moskalensky

Local therapeutic action and targeted drug release are promising approaches compared to traditional systemic drug administration. This is especially relevant for nitric oxide (NO), as its effects change dramatically depending on concentration and cellular context. Materials capable of releasing NO in deep tissues in a controlled manner might open new therapeutic opportunities. Light-sensitive NO donors represent a fascinating class of compounds with significant potential for precise and controlled NO release. However, most of them are sensitive to visible light, with only a few examples absorbing in a near-infrared therapeutic window. Here, we present the proof-of-concept of soft implants consisting of the photon upconverting core and the outer shell loaded with visible-light triggered NO donor. The separation into two compartments results in efficient energy harvesting by the dye and effective NO release under 980 nm infrared irradiation. Such implants could be used in smart therapies implying well-controlled and localized NO release.

与传统的全身给药相比,局部治疗作用和靶向药物释放是很有前途的方法。这与一氧化氮(NO)尤其相关,因为它的作用会根据浓度和细胞环境发生巨大变化。能够在深层组织中以可控的方式释放NO的材料可能会开辟新的治疗机会。光敏NO供体代表了一类迷人的化合物,具有精确和控制NO释放的巨大潜力。然而,它们中的大多数对可见光敏感,只有少数例子吸收近红外治疗窗口。在这里,我们提出了由光子上转换核心和装载可见光触发NO供体的外壳组成的软植入物的概念验证。在980 nm的红外照射下,染料能有效地收集能量,并有效地释放NO。这种植入物可以用于智能治疗,意味着良好控制和局部NO释放。
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引用次数: 0
Design and Validation of a Multimodal Diffuse Reflectance and Spatially Offset Raman Spectroscopy System for In Vivo Applications 体内应用的多模态漫反射和空间偏移拉曼光谱系统的设计和验证。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-25 DOI: 10.1002/jbio.202400333
April Mordi, Varsha Karunakaran, Umme Marium Mim, Eric Marple, Narasimhan Rajaram

We report on the development of a multimodal spectroscopy system, combining diffuse reflectance spectroscopy (DRS) and spatially offset Raman spectroscopy (SORS). A fiber optic probe was designed with spatially offset source–detector fibers to collect subsurface measurements for each modality, as well as ball lens-coupled fibers for superficial measurements. The system acquires DRS, zero-offset Raman spectroscopy (RS) and SORS with good signal-to-noise ratio. Measurements on chicken breast tissue demonstrate that both DRS and RS can acquire spectra from similar depths within tissue. Measurements acquired from the skin of a human volunteer demonstrate distinct Raman peaks at 937 and 1755 cm−1 that were unique to the zero-offset ball lens configuration and 718 and 1089 cm−1 for the spatially offset setting. We also identified Raman peaks corresponding to melanin that were prominent in the superficial measurements obtained with the ball lens-coupled fibers but not in the spatially offset fibers.

我们报告了一个多模态光谱系统的发展,结合漫反射光谱(DRS)和空间偏移拉曼光谱(SORS)。设计了一种光纤探头,采用空间偏移源探测器光纤来收集每种模态的地下测量数据,以及球透镜耦合光纤来收集表面测量数据。该系统采集到的DRS、零偏移拉曼光谱(RS)和传感器具有良好的信噪比。对鸡胸组织的测量表明,DRS和RS都可以获得组织内相似深度的光谱。从人类志愿者的皮肤上获得的测量结果显示,在937和1755 cm-1处有明显的拉曼峰,这是零偏移球透镜配置所特有的,而在718和1089 cm-1处则是空间偏移设置所特有的。我们还确定了与黑色素对应的拉曼峰,这些拉曼峰在球透镜耦合光纤获得的表面测量中很突出,但在空间偏移光纤中却没有。
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引用次数: 0
Silicone Loss During Histological Preparation of Breast Implant Tissue From Capsular Contracture, Quantified by Stimulated Raman Scattering Microscopy 用受激拉曼散射显微镜定量观察乳房假体包膜挛缩在组织制备过程中的硅酮损失。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-23 DOI: 10.1002/jbio.202400415
Robert W. Schmidt, Erik de Bakker, Freek Ariese

Breast augmentations, commonly performed for aesthetic or medical reasons, often use silicone (polydimethylsiloxane [PDMS]) implants. Some patients develop complications like capsular contracture, where scar tissue forms around the implant. Previously, we used stimulated Raman scattering (SRS) microscopy to detect and quantify silicone in stained capsule tissue, finding a correlation between silicone amount and contracture severity. However, we suspected silicone loss during histological preparation, which includes multiple steps like formalin fixation and paraffin embedding. In this study, we assessed silicone loss by comparing adjacent tissue samples from the same capsule: one prepared conventionally and the other snap-frozen. SRS microscopy revealed that snap-frozen samples had roughly five times more silicone, indicating significant silicone loss during conventional preparation. Thus, measuring silicone in histologically prepared samples likely underestimates PDMS content.

隆胸通常是出于美观或医学原因,通常使用硅胶(聚二甲基硅氧烷[PDMS])植入物。一些患者会出现并发症,如囊挛缩,在植入物周围形成疤痕组织。之前,我们使用受激拉曼散射(SRS)显微镜检测和量化染色囊组织中的硅酮,发现硅酮含量与挛缩严重程度之间的相关性。然而,我们怀疑在组织准备过程中硅酮丢失,包括福尔马林固定和石蜡包埋等多个步骤。在这项研究中,我们通过比较来自同一胶囊的相邻组织样本来评估硅酮损失:一个是常规制备的,另一个是快速冷冻的。SRS显微镜显示,速冻样品的硅树脂含量大约是常规制备过程中硅树脂损失的五倍。因此,在组织学制备的样品中测量有机硅可能会低估PDMS的含量。
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引用次数: 0
Tailored Functionalization of Plasmonic AgNPs/C:H:N:O Nanocomposite for Sensitive and Selective Detection 等离子体AgNPs/C:H:N:O纳米复合材料的定制功能化敏感和选择性检测。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-23 DOI: 10.1002/jbio.202400353
Sanjay Kumar, Hana Maskova, Anna Kuzminova, Paval Curda, Lenka Doudova, Jan Sterba, Ondřej Kylián, Ryan O. M. Rego, Vítězslav Straňák

We report here on the development of tailored plasmonic AgNPs/C:H:N:O plasma polymer nanocomposites for the detection of the pathogenic bacterium Borrelia afzelii , with high selectivity and sensitivity. Silver (Ag) nanoparticles, generated by a gas aggregation source, are incorporated onto a C:H:N:O plasma polymer matrix, which is deposited by magnetron sputtering of a nylon 6.6. These anchored Ag nanoparticles propagate localized surface plasmon resonance (LSPR), optically responding to changes caused by immobilized pathogens near the nanoparticles. The tailored functionalization of AgNPs/C:H:N:O nanocomposite surface allows both high selectivity for the pathogen and high sensitivity with an LSPR red-shift Δλ > (4.20 ± 0.71) nm for 50 Borrelia per area 0.785 cm2. The results confirmed the ability of LSPR modulation for the rapid and early detection of (not only) tested pathogens.

本文报道了一种具有高选择性和高灵敏度的等离子体AgNPs/C:H:N:O等离子体聚合物纳米复合材料用于检测致病菌伯氏疏螺旋体。银(Ag)纳米颗粒由气体聚集源产生,并结合到C:H:N:O等离子体聚合物基体上,该基体由尼龙6.6磁控溅射沉积。这些锚定的银纳米颗粒传播局部表面等离子体共振(LSPR),光学响应由纳米颗粒附近固定的病原体引起的变化。AgNPs/C:H:N:O纳米复合表面的定制功能化使得病原体具有高选择性和高灵敏度,LSPR红移Δλ bb0(4.20±0.71)nm / 0.785 cm2。结果证实了LSPR调节对(不仅仅是)被测病原体的快速和早期检测的能力。
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引用次数: 0
An Augmented Reality Visor for Intraoperative Visualization, Guidance, and Temperature Monitoring Using Fluorescence 一种用于术中可视化、引导和荧光温度监测的增强现实遮阳板。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-23 DOI: 10.1002/jbio.202400417
Oscar Cipolato, Matthias Fauconneau, Paige J. LeValley, Robert Nißler, Benjamin Suter, Inge K. Herrmann

Fluorescence-guided surgeries, including tumor resection and tissue soldering, are advancing the frontiers of surgical precision by offering enhanced control that minimizes tissue damage, improving recovery and outcomes. However, integrating fluorescence visualization with real-time temperature monitoring remains a challenge, limiting broader clinical use. We address this issue with an augmented reality (AR) visor that combines nanomaterial excitation, fluorescence detection, and temperature monitoring. Using advanced fluorescent nanoparticles like indocyanine green-doped particles and carbon nanotubes, the visor provides a comprehensive view of both the surgical field and sub-surface conditions invisible to the naked eye. This integration improves the safety and efficacy of fluorescence-guided surgeries, including laser tissue soldering, by ensuring optimal temperatures and laser guidance in real time. The presented technology enhances existing surgical techniques and supports the development of new strategies and sensing technologies in areas where traditional methods fall short, marking significant progress in precision surgery and potentially improving patient care.

荧光引导手术,包括肿瘤切除和组织焊接,通过提供增强的控制,最大限度地减少组织损伤,提高恢复和结果,正在推进手术精度的前沿。然而,将荧光可视化与实时温度监测相结合仍然是一个挑战,限制了更广泛的临床应用。我们通过增强现实(AR)遮阳板解决了这个问题,该遮阳板结合了纳米材料激发,荧光检测和温度监测。使用先进的荧光纳米颗粒,如吲哚菁绿掺杂颗粒和碳纳米管,遮阳板提供了肉眼看不见的手术场和表面下情况的全面视图。这种集成通过确保最佳温度和实时激光引导,提高了荧光引导手术(包括激光组织焊接)的安全性和有效性。所提出的技术增强了现有的外科技术,并在传统方法不足的领域支持新策略和传感技术的发展,标志着精确手术的重大进步,并有可能改善患者护理。
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引用次数: 0
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Journal of Biophotonics
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