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Deep learning classification of ex vivo human colon tissues using spectroscopic optical coherence tomography 利用光谱光学相干断层扫描对体内外人体结肠组织进行深度学习分类。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-02 DOI: 10.1002/jbio.202400082
Wesley Y. Kendall, Qinyi Tian, Shi Zhao, Seyedbabak Mirminachi, Erin O'Kane, Abel Joseph, Darin Dufault, David A. Miller, Chanjuan Shi, Jatin Roper, Adam Wax

Screening for colorectal cancer (CRC) with colonoscopy has improved patient outcomes; however, it remains the third leading cause of cancer-related mortality, novel strategies to improve screening are needed. Here, we propose an optical biopsy technique based on spectroscopic optical coherence tomography (OCT). Depth resolved OCT images are analyzed as a function of wavelength to measure optical tissue properties and used as input to machine learning algorithms. Previously, we used this approach to analyze mouse colon polyps. Here, we extend the approach to examine human biopsied colonic epithelial tissue samples ex vivo. Optical properties are used as input to a novel deep learning architecture, producing accuracy of up to 97.9% in discriminating tissue type. SOCT parameters are used to create false colored en face OCT images and deep learning classifications are used to enable visual classification by tissue type. This study advances SOCT toward clinical utility for analysis of colonic epithelium.

使用结肠镜筛查结肠直肠癌(CRC)改善了患者的预后;然而,它仍然是癌症相关死亡率的第三大原因,因此需要新的策略来改善筛查。在此,我们提出了一种基于光谱光学相干断层扫描(OCT)的光学活检技术。深度分辨 OCT 图像通过分析波长函数来测量光学组织特性,并将其作为机器学习算法的输入。此前,我们曾用这种方法分析了小鼠结肠息肉。在这里,我们将这种方法扩展到检查活检的人体结肠上皮组织样本。光学特性被用作新型深度学习架构的输入,在区分组织类型方面的准确率高达 97.9%。SOCT 参数用于创建假彩色正视 OCT 图像,深度学习分类用于按组织类型进行视觉分类。这项研究推动了 SOCT 在分析结肠上皮方面的临床应用。
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引用次数: 0
Convolutional neural networks can detect orthostatic hypotension in Parkinson's disease using resting-state functional near-infrared spectroscopy data 卷积神经网络可利用静息态功能性近红外光谱数据检测帕金森病患者的正压性低血压。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-01 DOI: 10.1002/jbio.202400138
Seung Hyun Lee, Seung-Ho Paik, Shin-Young Kang, Zephaniah Phillips V, Jung Bin Kim, Byung-Jo Kim, Beop-Min Kim

Neurological disorders such as Parkinson's disease (PD) often adversely affect the vascular system, leading to alterations in blood flow patterns. Functional near-infrared spectroscopy (fNIRS) is used to monitor hemodynamic changes via signal measurement. This study investigated the potential of using resting-state fNIRS data through a convolutional neural network (CNN) to evaluate PD with orthostatic hypotension. The CNN demonstrated significant efficacy in analyzing fNIRS data, and it outperformed the other machine learning methods. The results indicate that judicious input data selection can enhance accuracy by over 85%, while including the correlation matrix as an input further improves the accuracy to more than 90%. This study underscores the promising role of CNN-based fNIRS data analysis in the diagnosis and management of the PD. This approach enhances diagnostic accuracy, particularly in resting-state conditions, and can reduce the discomfort and risks associated with current diagnostic methods, such as the head-up tilt test.

帕金森病(PD)等神经系统疾病通常会对血管系统产生不利影响,导致血流模式发生变化。功能性近红外光谱(fNIRS)通过信号测量来监测血液动力学变化。本研究调查了通过卷积神经网络(CNN)使用静息态 fNIRS 数据评估患有正张力性低血压的帕金森病患者的潜力。卷积神经网络在分析 fNIRS 数据方面表现出了明显的功效,其表现优于其他机器学习方法。结果表明,明智地选择输入数据可将准确率提高 85% 以上,而将相关矩阵作为输入可将准确率进一步提高到 90% 以上。这项研究强调了基于 CNN 的 fNIRS 数据分析在帕金森病诊断和管理中的重要作用。这种方法提高了诊断的准确性,尤其是在静息状态条件下,并能减少与当前诊断方法(如抬头倾斜试验)相关的不适和风险。
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引用次数: 0
Non-invasive screening of bladder cancer using digital microfluidics and FLIM technology combined with deep learning 利用数字微流控技术、FLIM 技术和深度学习对膀胱癌进行无创筛查。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-28 DOI: 10.1002/jbio.202400192
Wenhua Su, Chenyang Xu, Jinzhong Hu, Qiushu Chen, Yuwei Yang, Mingmei Ji, Yiyan Fei, Jiong Ma, Haowen Jiang, Lan Mi

Non-invasive screening for bladder cancer is crucial for treatment and postoperative follow-up. This study combines digital microfluidics (DMF) technology with fluorescence lifetime imaging microscopy (FLIM) for urine analysis and introduces a novel non-invasive bladder cancer screening technique. Initially, the DMF was utilized to perform preliminary screening and enrichment of urine exfoliated cells from 54 participants, followed by cell staining and FLIM analysis to assess the viscosity of the intracellular microenvironment. Subsequently, a deep learning residual convolutional neural network was employed to automatically classify FLIM images, achieving a three-class prediction of high-risk (malignant), low-risk (benign), and minimal risk (normal) categories. The results demonstrated a high consistency with pathological diagnosis, with an accuracy of 91% and a precision of 93%. Notably, the method is sensitive for both high-grade and low-grade bladder cancer cases. This highly accurate non-invasive screening method presents a promising approach for bladder cancer screening with significant clinical application potential.

无创膀胱癌筛查对治疗和术后随访至关重要。这项研究将数字微流控(DMF)技术与荧光寿命成像显微镜(FLIM)相结合,用于尿液分析,并引入了一种新型无创膀胱癌筛查技术。首先,利用 DMF 对 54 名参与者的尿液脱落细胞进行初步筛选和富集,然后进行细胞染色和 FLIM 分析,以评估细胞内微环境的粘度。随后,采用深度学习残差卷积神经网络对 FLIM 图像进行自动分类,实现了高风险(恶性)、低风险(良性)和极低风险(正常)三类预测。结果显示与病理诊断高度一致,准确率为 91%,精确率为 93%。值得注意的是,该方法对高级别和低级别膀胱癌病例都很敏感。这种高度准确的无创筛查方法为膀胱癌筛查提供了一种前景广阔的方法,具有巨大的临床应用潜力。
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引用次数: 0
Effects of solar radiations on stratum corneum hydration: Part II, protective action of solar filters 太阳辐射对角质层水合作用的影响:第二部分,太阳滤光片的保护作用。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-27 DOI: 10.1002/jbio.202400107
Ali Assi, Rime Michael-Jubeli, Hélène Duplan, Arlette Baillet-Guffroy, Ali Tfayli, Carine Jacques-Jamin

The skin surface lipids (SSLs) film, composed of sebum and keratinocyte membrane lipids, is crucial to the barrier function of the stratum corneum (SC). The first part of this study investigated the impact of solar radiation on the SC based on a novel hydration and dehydration approach using Raman spectroscopy. The SSLs were found to absorb solar light, and thus participate to the protection of the skin surface. However, the protective function of the SSLs may be limited and is dependent to the heterogenous distribution of SSLs over the body surface. To ensure comprehensive protection, synergistic measures such as the application of solar filters are necessary. In this second part of the study, we have evaluated the limits of the protection capacity of SSLs and explored the protective action of a solar filters on both SSLs composition and the water hydration and dehydration kinetics in the SC.

由皮脂和角质细胞膜脂质组成的皮肤表面脂质(SSL)膜对角质层(SC)的屏障功能至关重要。本研究的第一部分利用拉曼光谱的新型水合和脱水方法研究了太阳辐射对角质层的影响。研究发现 SSL 可以吸收太阳光,从而起到保护皮肤表面的作用。然而,SSL 的保护功能可能是有限的,而且取决于 SSL 在体表的不同分布。为了确保全面的保护,有必要采取协同措施,如使用太阳滤光片。在本研究的第二部分中,我们评估了 SSL 保护能力的极限,并探讨了太阳能滤光片对 SSL 成分以及 SC 中的水合和脱水动力学的保护作用。
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引用次数: 0
Extraction of collagen morphological features from second-harmonic generation microscopy images via GLCM and CT analyses: A cross-laboratory study 通过 GLCM 和 CT 分析从二次谐波显微镜图像中提取胶原形态特征:跨实验室研究。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-27 DOI: 10.1002/jbio.202400090
R. Cicchi, E. Baria, M. Mari, G. Filippidis, D. Chorvat

Second-harmonic generation (SHG) microscopy provides a high-resolution label-free approach for noninvasively detecting collagen organization and its pathological alterations. Up to date, several imaging analysis algorithms for extracting collagen morphological features from SHG images—such as fiber size and length, order and anisotropy—have been developed. However, the dependence of extracted features on experimental setting represents a significant obstacle for translating the methodology in the clinical practice. We tackled this problem by acquiring SHG images of the same kind of collagenous sample in various laboratories using different experimental setups and imaging conditions. The acquired images were analyzed by commonly used algorithms, such as gray-level co-occurrence matrix or curvelet transform; the extracted morphological features were compared, finding that they strongly depend on some experimental parameters, whereas they are almost independent from others. We conclude with useful suggestions for comparing results obtained in different labs using different experimental setups and conditions.

二次谐波发生(SHG)显微镜为无创检测胶原组织及其病理改变提供了一种高分辨率、无标记的方法。迄今为止,已开发出几种从 SHG 图像中提取胶原形态特征的成像分析算法,如纤维尺寸和长度、有序性和各向异性。然而,提取特征对实验环境的依赖性是将该方法应用于临床实践的一大障碍。为了解决这个问题,我们在不同的实验室使用不同的实验装置和成像条件获取同种胶原蛋白样本的 SHG 图像。我们采用灰度共现矩阵或小弯变换等常用算法对获取的图像进行了分析;对提取的形态特征进行了比较,发现它们与某些实验参数密切相关,而与其他参数几乎无关。最后,我们提出了一些有用的建议,用于比较不同实验室使用不同实验装置和条件获得的结果。
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引用次数: 0
Virtual-point-based deconvolution for optical-resolution photoacoustic microscopy 用于光学分辨光声显微镜的基于虚拟点的解卷积。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-27 DOI: 10.1002/jbio.202400078
Rui Yao, Anthony DiSpirito, Hongje Jang, Colton Thomas McGarraugh, Van Tu Nguyen, Lingyan Shi, Junjie Yao

Optical-resolution photoacoustic microscopy (OR-PAM) has been increasingly utilized for in vivo imaging of biological tissues, offering structural, functional, and molecular information. In OR-PAM, it is often necessary to make a trade-off between imaging depth, lateral resolution, field of view, and imaging speed. To improve the lateral resolution without sacrificing other performance metrics, we developed a virtual-point-based deconvolution algorithm for OR-PAM (VP-PAM). VP-PAM has achieved a resolution improvement ranging from 43% to 62.5% on a single-line target. In addition, it has outperformed Richardson-Lucy deconvolution with 15 iterations in both structural similarity index and peak signal-to-noise ratio on an OR-PAM image of mouse brain vasculature. When applied to an in vivo glass frog image obtained by a deep-penetrating OR-PAM system with compromised lateral resolution, VP-PAM yielded enhanced resolution and contrast with better-resolved microvessels.

光学分辨光声显微镜(OR-PAM)越来越多地用于生物组织的活体成像,提供结构、功能和分子信息。在 OR-PAM 中,通常需要在成像深度、横向分辨率、视场和成像速度之间做出权衡。为了在不牺牲其他性能指标的情况下提高横向分辨率,我们为 OR-PAM 开发了一种基于虚拟点的解卷积算法(VP-PAM)。VP-PAM 对单线目标的分辨率提高了 43% 到 62.5%。此外,在小鼠脑血管的 OR-PAM 图像上,VP-PAM 的结构相似性指数和峰值信噪比均优于迭代 15 次的 Richardson-Lucy 去卷积算法。当将 VP-PAM 应用于由横向分辨率较低的深穿透 OR-PAM 系统获得的活体玻璃蛙图像时,VP-PAM 的分辨率和对比度都得到了增强,微血管的分辨率更高。
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引用次数: 0
Raman spectroscopic analysis of human blood serum of glaucoma patients supplemented with macular pigment carotenoids 对补充了黄斑色素类胡萝卜素的青光眼患者血清进行拉曼光谱分析。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-27 DOI: 10.1002/jbio.202400060
Joy Udensi, Ekaterina Loskutova, James Loughman, Hugh J. Byrne

As all major dietary carotenoids are contained in blood, it is a suitable substrate to evaluate their content, in vivo. Following 18-month supplementation of open-angle glaucoma patients with macula-pigment carotenoids (Lutein, Zeaxanthin and Meso-Zeaxanthin) in the European Nutrition in Glaucoma Management trial, Raman spectroscopic analysis of the carotenoid content of pre- and post-supplementation participant blood serum was carried out, to investigate the systemic impact of the supplementation regimen and explore a more direct way of quantifying this impact using routine blood tests. Using a 532 nm laser source for optimal response, a consistent increase in serum carotenoid concentration was observed in the supplemented serum, highest in patients with initial high baseline carotenoid content. A shift in the 1519 cm−1 carotenoid peak also revealed differences in the carotenoid structural profile of the two groups. The findings highlight the potential of Raman spectroscopy toquantify and differentiate carotenoids directly in blood serum.

由于血液中含有膳食中所有主要的类胡萝卜素,因此血液是评估其体内含量的合适基质。在欧洲青光眼管理营养试验中,开角型青光眼患者服用了 18 个月的黄斑色素类胡萝卜素(叶黄素、玉米黄质和中玉米黄质)补充剂后,对补充前后参与者血清中类胡萝卜素的含量进行了拉曼光谱分析,以研究补充方案对全身的影响,并探索一种利用常规血液检测量化这种影响的更直接方法。使用 532 nm 激光光源以获得最佳响应,在补充血清中观察到类胡萝卜素浓度持续增加,在最初类胡萝卜素基线含量较高的患者中增幅最大。1519 cm-1 类胡萝卜素峰的移动也显示了两组患者类胡萝卜素结构的差异。研究结果凸显了拉曼光谱直接量化和区分血清中类胡萝卜素的潜力。
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引用次数: 0
In vivo Raman spectroscopic and fluorescence study of suspected melanocytic lesions and surrounding healthy skin 疑似黑色素细胞病变及其周围健康皮肤的体内拉曼光谱和荧光研究。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-27 DOI: 10.1002/jbio.202400050
Di Wu, Anatoly Fedorov Kukk, Rüdiger Panzer, Steffen Emmert, Bernhard Roth

Cutaneous melanoma is the most lethal skin cancer and noninvasively distinguishing it from benign tumor is a major challenge. Raman spectroscopic measurements were conducted on 65 suspected melanocytic lesions and surrounding healthy skin from 47 patients. Compared to the spectra of healthy skin, spectra of melanocytic lesions exhibited lower intensities in carotenoid bands and higher intensities in lipid and melanin bands, suggesting similar variations in the content of these components. Distinct variations were observed among the autofluorescence intensities of healthy skin, benign nevi and malignant melanoma. By incorporating autofluorescence information, the classification accuracy of the support vector machine for spectra of healthy skin, nevi, and melanoma reached 90.2%, surpassing the 87.9% accuracy achieved without autofluorescence, with this difference being statistically significant. These findings indicate the diagnostic value of autofluorescence intensity, which reflect differences in fluorophore content, chemical composition, and structure among healthy skin, nevi, and melanoma.

皮肤黑色素瘤是致死率最高的皮肤癌,如何将其与良性肿瘤进行无创鉴别是一项重大挑战。我们对来自 47 名患者的 65 个疑似黑色素细胞病变和周围健康皮肤进行了拉曼光谱测量。与健康皮肤的光谱相比,黑色素细胞病变的光谱显示类胡萝卜素带的强度较低,而脂质和黑色素带的强度较高,这表明这些成分的含量存在类似的变化。健康皮肤、良性痣和恶性黑色素瘤的自发荧光强度之间也存在明显差异。加入自体荧光信息后,支持向量机对健康皮肤、痣和黑色素瘤光谱的分类准确率达到了 90.2%,超过了没有加入自体荧光信息时的 87.9%,这一差异具有显著的统计学意义。这些发现表明了自发荧光强度的诊断价值,它反映了健康皮肤、痣和黑色素瘤之间荧光团含量、化学成分和结构的差异。
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引用次数: 0
Effect of 460 nm blue light PBM on human MeWo melanoma cells 460 纳米蓝光 PBM 对人类 MeWo 黑色素瘤细胞的影响。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-27 DOI: 10.1002/jbio.202400071
Haokuan Qin, Jiali Yang, Hui Jiang, Shijie Huang, Qiqi Fu, Baohua Zhu, Muqing Liu, Gaofei Chen

Photobiomodulation (PBM) using 460 nm blue light has been shown to have an inhibitory effect on skin cancer cells. In this study, we used a continuous LED light source with a wavelength of 460 nm and designed various combinations of power density (ranging from 6.4 to 25.6 mW) and dose (ranging from 0.96 to 30.72 J/cm2) to conduct treatment experiments on MeWo cells to investigate the effects of blue light on MeWo melanoma cells. We are focusing on cell viability, cytotoxicity, mitochondrial function, oxidative stress, and apoptosis. We found that blue light inhibits these melanoma cells through oxidative stress and DNA damage, and this inhibition intensifies at higher irradiance levels. Although the cells initially attempt to resist the stress induced by the treatment, they eventually undergo apoptosis over time. These findings contribute to understanding melanoma's molecular response to blue light PBM, lay the groundwork for future clinical applications.

使用 460 纳米蓝光的光生物调制(PBM)已被证明对皮肤癌细胞有抑制作用。在本研究中,我们使用波长为 460 nm 的连续 LED 光源,设计了不同的功率密度(从 6.4 到 25.6 mW)和剂量组合(从 0.96 到 30.72 J/cm2),对 MeWo 细胞进行处理实验,研究蓝光对 MeWo 黑色素瘤细胞的影响。我们的研究重点是细胞活力、细胞毒性、线粒体功能、氧化应激和细胞凋亡。我们发现,蓝光通过氧化应激和 DNA 损伤抑制了这些黑色素瘤细胞,而且这种抑制作用在辐照度越高时越明显。虽然细胞最初试图抵御治疗引起的压力,但随着时间的推移,它们最终会发生凋亡。这些发现有助于了解黑色素瘤对蓝光 PBM 的分子反应,为未来的临床应用奠定了基础。
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引用次数: 0
Combining red photobiomodulation therapy with polydioxanone threads for wrinkle reduction in the glabella region: A randomized, controlled, double-blind clinical trial 将红色光生物调节疗法与聚二氧丙酮线结合用于睑板部除皱:随机对照双盲临床试验。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-27 DOI: 10.1002/jbio.202400139
Paula Caroline Garcia, Danilo Peron Meireles, João Alberto Fioravante Tassinary, Christiane Pavani

The combination of polydioxanone (PDO) threads with other technologies has garnered significant interest for rejuvenation purposes. Photobiomodulation (PBM) has the potential to improve patient comfort and recovery after minimally invasive rejuvenation protocols and also contribute to the overall efficacy of these procedures, fostering an integrative approach to cutaneous rejuvenation. The objective os this work was to investigate concurrent application of PDO threads and red LED PBM on glabellar static wrinkles, in a parallel randomized sham-controlled trial. Forty individuals with Glogau aging classification levels 3 and 4, static glabellar wrinkles, and no significant comorbidities received PDO threads applied along glabellar line. Effective PBM group received 1.35 J and 630 nm red LED light punctually along threads, twice weekly for nine sessions over 30 days. The outcome measures were swelling assessment, dermal thickness and PDO thread degradation via linear ultrasound. No swelling was detected 24 h post-PDO thread application, hindering PBM effect assessment. PDO threads induced dermal thickening; no added effect with PBM. No significant difference in thread hydrolysis between groups, though some ultrasound records inconclusive on thread presence. The absence of swelling may stem from various factors, including the timing of post-procedure swelling assessment, operator proficiency in thread application, and procedural characteristics. No evidence supports the notion that PBM augments dermal thickening, however other light parameters should be studied. Insufficient data to demonstrate PBM's effectiveness in controlling post-procedure swelling. Combination of PBM with PDO thread application doesn't enhance dermal thickening, nor accelerate thread degradation at the parameters used here.

聚二氧丙酮(PDO)线与其他技术的结合在年轻化方面引起了极大的兴趣。光生物调节(PBM)有可能改善微创年轻化方案后患者的舒适度和恢复情况,还有助于提高这些程序的整体疗效,促进皮肤年轻化的综合方法。这项工作的目的是在一项平行随机假对照试验中,研究同时应用 PDO 线和红色 LED PBM 治疗眉间静态皱纹的效果。40 名 Glogau 衰老分级为 3 级和 4 级、有静态瞥眉皱纹且无明显合并症的人接受了沿瞥眉线施用 PDO 线的治疗。有效的 PBM 组接受 1.35 J 和 630 nm 的红色 LED 光照射,每周两次,共九次,每次 30 天。结果测量包括肿胀评估、真皮厚度和线性超声波 PDO 线降解。使用 PDO 线 24 小时后未发现肿胀,这妨碍了对 PBM 效果的评估。PDO 线诱导真皮增厚;而 PBM 没有增加效果。虽然有些超声波记录无法确定是否存在线头,但各组之间的线头水解情况无明显差异。没有肿胀可能是多种因素造成的,包括术后肿胀评估的时间、操作者使用线的熟练程度和程序特点。没有证据支持 PBM 能增加真皮增厚的观点,但应研究其他光线参数。没有足够数据证明 PBM 能有效控制术后肿胀。将 PBM 与 PDO 线结合使用不会增强真皮增厚,也不会在此处使用的参数下加速线的降解。
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引用次数: 0
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Journal of Biophotonics
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